Wall clock time and date at job start Mon Mar 30 2020 04:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47463 * 2 1 4 4 C 1.50698 * 109.47243 * 239.99983 * 2 1 3 5 5 H 1.07997 * 120.00149 * 240.00346 * 4 2 1 6 6 C 1.37876 * 120.00025 * 60.00375 * 4 2 1 7 7 N 1.31517 * 120.00026 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00295 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47355 * 59.99505 * 8 6 4 10 10 H 1.48497 * 109.47464 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47412 * 299.99764 * 8 6 4 12 12 N 1.46903 * 109.47090 * 120.00081 * 2 1 3 13 13 C 1.46902 * 110.99799 * 56.62298 * 12 2 1 14 14 C 1.46897 * 111.00001 * 292.66689 * 12 2 1 15 15 H 1.09007 * 109.46678 * 88.88526 * 14 12 2 16 16 C 1.52994 * 109.47269 * 328.88957 * 14 12 2 17 17 C 1.53004 * 109.47062 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47353 * 59.99575 * 17 16 14 19 19 C 1.52999 * 109.46887 * 300.00195 * 18 17 16 20 20 C 1.52999 * 109.47495 * 60.00036 * 19 18 17 21 21 C 1.52987 * 109.47207 * 180.02562 * 20 19 18 22 22 O 1.42895 * 109.46914 * 59.99657 * 20 19 18 23 23 H 1.08994 * 109.47137 * 178.07897 * 1 2 3 24 24 H 1.08999 * 109.47045 * 298.08585 * 1 2 3 25 25 H 1.09003 * 109.46576 * 58.07709 * 1 2 3 26 26 H 0.96993 * 120.00514 * 180.02562 * 7 6 4 27 27 H 1.08991 * 109.47104 * 301.81684 * 13 12 2 28 28 H 1.08999 * 109.46649 * 61.81746 * 13 12 2 29 29 H 1.08997 * 109.46856 * 181.81358 * 13 12 2 30 30 H 1.09000 * 109.47225 * 299.99186 * 16 14 12 31 31 H 1.08997 * 109.47565 * 59.99388 * 16 14 12 32 32 H 1.09005 * 109.46960 * 179.97438 * 17 16 14 33 33 H 1.09000 * 109.47091 * 299.99263 * 17 16 14 34 34 H 1.08992 * 109.46795 * 60.00179 * 18 17 16 35 35 H 1.09002 * 109.46606 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.46841 * 299.99873 * 19 18 17 37 37 H 1.08997 * 109.47069 * 180.02562 * 19 18 17 38 38 H 1.09008 * 109.47244 * 191.63198 * 21 20 19 39 39 H 1.08998 * 109.47181 * 311.62964 * 21 20 19 40 40 H 1.09004 * 109.47676 * 71.62945 * 21 20 19 41 41 H 0.96706 * 114.00522 * 60.00199 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8259 -2.5201 -4.0078 10 1 1.8261 -0.4205 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 7 2.0196 -0.6925 1.1995 13 6 1.4837 -2.0583 1.2744 14 6 1.6968 0.0671 2.4146 15 1 0.7142 -0.2319 2.7797 16 6 1.6880 1.5630 2.0936 17 6 1.3512 2.3542 3.3592 18 6 2.4024 2.0692 4.4338 19 6 2.4111 0.5733 4.7547 20 6 2.7480 -0.2179 3.4892 21 6 2.7560 -1.7137 3.8100 22 8 4.0362 0.1743 3.0112 23 1 -0.3633 -1.0270 -0.0344 24 1 -0.3633 0.4838 0.9066 25 1 -0.3632 0.5434 -0.8723 26 1 0.7082 1.1610 -3.4843 27 1 0.3945 -2.0213 1.2804 28 1 1.8232 -2.6296 0.4104 29 1 1.8362 -2.5372 2.1879 30 1 2.6706 1.8621 1.7286 31 1 0.9389 1.7661 1.3284 32 1 1.3454 3.4200 3.1306 33 1 0.3685 2.0551 3.7238 34 1 3.3850 2.3684 4.0691 35 1 2.1625 2.6333 5.3351 36 1 1.4284 0.2743 5.1193 37 1 3.1596 0.3704 5.5205 38 1 3.1927 -2.2621 2.9752 39 1 3.3469 -1.8894 4.7089 40 1 1.7341 -2.0557 3.9744 41 1 4.7531 0.0220 3.6421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699658614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:53 Heat of formation + Delta-G solvation = -42.280224 kcal Electronic energy + Delta-G solvation = -19405.254477 eV Core-core repulsion = 16706.314243 eV Total energy + Delta-G solvation = -2698.940234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.70701 -36.38034 -34.55975 -32.66244 -31.22669 -29.46819 -28.18342 -26.73023 -25.11380 -23.65604 -22.26233 -20.86960 -19.85655 -18.48542 -16.15621 -15.94069 -15.22503 -15.02719 -14.45702 -14.08348 -13.82621 -13.63412 -13.15328 -12.84337 -12.66933 -12.26627 -11.88107 -11.69273 -11.60118 -11.09815 -11.08962 -10.89613 -10.76586 -10.63785 -10.47359 -10.38165 -10.22836 -10.20700 -9.97980 -9.87255 -9.31436 -9.11646 -8.71385 -8.24359 -6.92602 -5.91542 -3.93190 3.38215 3.41939 3.45577 4.48713 4.63348 4.90715 4.96884 5.14278 5.32149 5.40588 5.46793 5.54255 5.65114 5.79040 5.83231 5.92930 5.99843 6.02033 6.17385 6.22557 6.26683 6.35427 6.46349 6.47451 6.51930 6.66730 6.75308 6.81357 6.89052 6.99213 7.09449 7.24067 7.62742 7.81616 7.95198 8.18739 8.30964 8.52532 8.76621 9.12646 9.70671 11.15956 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032821 B = 0.007549 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.916682 B = 3708.240976 C = 4026.240664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.206 3.794 3 H 0.050 0.950 4 C -0.494 4.494 5 H 0.060 0.940 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.517 5.517 13 C 0.014 3.986 14 C 0.105 3.895 15 H 0.038 0.962 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.144 4.144 20 C 0.144 3.856 21 C -0.179 4.179 22 O -0.531 6.531 23 H 0.029 0.971 24 H 0.008 0.992 25 H 0.085 0.915 26 H 0.259 0.741 27 H 0.014 0.986 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -0.542 13.986 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.100 3.900 3 H 0.068 0.932 4 C -0.533 4.533 5 H 0.078 0.922 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.240 5.240 13 C -0.134 4.134 14 C -0.004 4.004 15 H 0.056 0.944 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.151 4.151 19 C -0.182 4.182 20 C 0.102 3.898 21 C -0.237 4.237 22 O -0.334 6.334 23 H 0.048 0.952 24 H 0.027 0.973 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.537 -0.298 13.250 13.342 hybrid contribution -0.433 -0.637 -0.274 0.817 sum 1.104 -0.935 12.976 13.057 Atomic orbital electron populations 1.22480 1.01286 0.99486 1.00019 1.19428 0.89266 0.95333 0.85967 0.93183 1.21115 1.30065 1.12251 0.89826 0.92225 1.24908 0.95415 0.95209 0.98862 1.69874 1.37360 1.23195 1.23267 0.86618 0.79223 0.79547 0.82316 1.20541 1.21503 1.20312 1.62260 1.58849 1.01335 1.01562 1.22725 0.96735 0.92334 1.01648 1.21398 0.93257 0.94272 0.91507 0.94402 1.21855 1.03562 0.93703 0.96727 1.21572 0.98089 0.99879 0.96107 1.21440 1.00314 0.95227 0.98074 1.22253 1.01681 0.96551 0.97716 1.21152 0.84996 0.91528 0.92121 1.22741 1.01704 0.97780 1.01433 1.86798 1.15476 1.86614 1.44517 0.95214 0.97333 0.89614 0.93134 0.96788 0.91343 0.92343 0.90425 0.90433 0.92291 0.92875 0.91341 0.92969 0.91752 0.92299 0.89904 0.93708 0.92352 0.79908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 7.74 37.16 0.29 -3.97 16 2 C 0.21 5.25 1.81 -68.87 -0.12 5.12 16 3 H 0.05 1.40 5.79 -51.93 -0.30 1.10 16 4 C -0.49 -13.86 7.97 -34.44 -0.27 -14.13 16 5 H 0.06 1.69 6.91 -52.49 -0.36 1.33 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.98 11.34 55.43 0.63 -25.35 16 8 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.52 -11.32 4.35 -228.30 -0.99 -12.32 16 13 C 0.01 0.28 8.22 60.07 0.49 0.77 16 14 C 0.11 1.95 0.88 -67.72 -0.06 1.89 16 15 H 0.04 0.71 7.66 -51.92 -0.40 0.31 16 16 C -0.12 -2.27 3.64 -26.73 -0.10 -2.37 16 17 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 18 C -0.11 -1.46 5.78 -26.73 -0.15 -1.62 16 19 C -0.14 -1.81 4.89 -26.73 -0.13 -1.94 16 20 C 0.14 2.20 0.74 -90.63 -0.07 2.13 16 21 C -0.18 -2.48 7.12 37.15 0.26 -2.21 16 22 O -0.53 -8.73 11.50 -35.23 -0.41 -9.13 16 23 H 0.03 0.71 6.42 -51.93 -0.33 0.38 16 24 H 0.01 0.18 6.09 -51.93 -0.32 -0.14 16 25 H 0.09 2.32 6.12 -51.93 -0.32 2.00 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.01 0.28 6.18 -51.93 -0.32 -0.04 16 28 H 0.07 1.48 6.73 -51.93 -0.35 1.13 16 29 H 0.06 1.00 3.81 -51.93 -0.20 0.80 16 30 H 0.08 1.62 7.45 -51.93 -0.39 1.23 16 31 H 0.08 1.62 4.95 -51.93 -0.26 1.37 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.29 6.33 -51.92 -0.33 0.96 16 39 H 0.04 0.51 8.10 -51.93 -0.42 0.09 16 40 H 0.06 0.78 7.46 -51.93 -0.39 0.39 16 41 H 0.36 4.25 9.05 45.56 0.41 4.66 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -29.78 293.80 -7.39 -37.17 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.91 Total: 5.06 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -0.12 Total: -16.75 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.37 Total: -37.67 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.41 Total: -9.13 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.78 -7.39 -37.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699658614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.113 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds