Wall clock time and date at job start Mon Mar 30 2020 04:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47463 * 2 1 4 4 C 1.50698 * 109.47243 * 239.99983 * 2 1 3 5 5 H 1.07997 * 120.00149 * 240.00346 * 4 2 1 6 6 C 1.37876 * 120.00025 * 60.00375 * 4 2 1 7 7 N 1.31517 * 120.00026 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00295 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47355 * 59.99505 * 8 6 4 10 10 H 1.48497 * 109.47464 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47412 * 299.99764 * 8 6 4 12 12 N 1.46903 * 109.47090 * 120.00081 * 2 1 3 13 13 C 1.46902 * 110.99799 * 56.62298 * 12 2 1 14 14 C 1.46897 * 111.00001 * 292.66689 * 12 2 1 15 15 H 1.09007 * 109.46678 * 88.88526 * 14 12 2 16 16 C 1.52994 * 109.47269 * 328.88957 * 14 12 2 17 17 C 1.53004 * 109.47062 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47353 * 59.99575 * 17 16 14 19 19 C 1.52999 * 109.46887 * 300.00195 * 18 17 16 20 20 C 1.52999 * 109.47495 * 60.00036 * 19 18 17 21 21 C 1.52987 * 109.47207 * 180.02562 * 20 19 18 22 22 O 1.42895 * 109.46914 * 59.99657 * 20 19 18 23 23 H 1.08994 * 109.47137 * 178.07897 * 1 2 3 24 24 H 1.08999 * 109.47045 * 298.08585 * 1 2 3 25 25 H 1.09003 * 109.46576 * 58.07709 * 1 2 3 26 26 H 0.96993 * 120.00514 * 180.02562 * 7 6 4 27 27 H 1.08991 * 109.47104 * 301.81684 * 13 12 2 28 28 H 1.08999 * 109.46649 * 61.81746 * 13 12 2 29 29 H 1.08997 * 109.46856 * 181.81358 * 13 12 2 30 30 H 1.09000 * 109.47225 * 299.99186 * 16 14 12 31 31 H 1.08997 * 109.47565 * 59.99388 * 16 14 12 32 32 H 1.09005 * 109.46960 * 179.97438 * 17 16 14 33 33 H 1.09000 * 109.47091 * 299.99263 * 17 16 14 34 34 H 1.08992 * 109.46795 * 60.00179 * 18 17 16 35 35 H 1.09002 * 109.46606 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.46841 * 299.99873 * 19 18 17 37 37 H 1.08997 * 109.47069 * 180.02562 * 19 18 17 38 38 H 1.09008 * 109.47244 * 191.63198 * 21 20 19 39 39 H 1.08998 * 109.47181 * 311.62964 * 21 20 19 40 40 H 1.09004 * 109.47676 * 71.62945 * 21 20 19 41 41 H 0.96706 * 114.00522 * 60.00199 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8259 -2.5201 -4.0078 10 1 1.8261 -0.4205 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 7 2.0196 -0.6925 1.1995 13 6 1.4837 -2.0583 1.2744 14 6 1.6968 0.0671 2.4146 15 1 0.7142 -0.2319 2.7797 16 6 1.6880 1.5630 2.0936 17 6 1.3512 2.3542 3.3592 18 6 2.4024 2.0692 4.4338 19 6 2.4111 0.5733 4.7547 20 6 2.7480 -0.2179 3.4892 21 6 2.7560 -1.7137 3.8100 22 8 4.0362 0.1743 3.0112 23 1 -0.3633 -1.0270 -0.0344 24 1 -0.3633 0.4838 0.9066 25 1 -0.3632 0.5434 -0.8723 26 1 0.7082 1.1610 -3.4843 27 1 0.3945 -2.0213 1.2804 28 1 1.8232 -2.6296 0.4104 29 1 1.8362 -2.5372 2.1879 30 1 2.6706 1.8621 1.7286 31 1 0.9389 1.7661 1.3284 32 1 1.3454 3.4200 3.1306 33 1 0.3685 2.0551 3.7238 34 1 3.3850 2.3684 4.0691 35 1 2.1625 2.6333 5.3351 36 1 1.4284 0.2743 5.1193 37 1 3.1596 0.3704 5.5205 38 1 3.1927 -2.2621 2.9752 39 1 3.3469 -1.8894 4.7089 40 1 1.7341 -2.0557 3.9744 41 1 4.7531 0.0220 3.6421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699658614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:53 Heat of formation + Delta-G solvation = -63.539975 kcal Electronic energy + Delta-G solvation = -19406.176369 eV Core-core repulsion = 16706.314243 eV Total energy + Delta-G solvation = -2699.862126 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07740 -37.99465 -35.80973 -34.65603 -32.56684 -30.98971 -29.89088 -27.99233 -27.25189 -25.24875 -23.72274 -22.13413 -21.30250 -20.11396 -18.13424 -17.28557 -16.88842 -16.52115 -16.13585 -15.36434 -15.22492 -15.17013 -14.75848 -14.36388 -14.10131 -13.68031 -13.45625 -13.14670 -12.96328 -12.81490 -12.71335 -12.49797 -12.41565 -12.34109 -12.07621 -12.04285 -11.94496 -11.61480 -11.51901 -11.34641 -10.85540 -10.70089 -10.39107 -10.33198 -8.66058 -8.08083 -6.17301 1.40574 1.42768 1.50188 2.43814 3.20647 3.36209 3.55851 3.84947 3.98425 4.10927 4.24488 4.34172 4.46254 4.53966 4.55713 4.68871 4.73138 4.79337 4.83173 4.86503 4.94996 4.98938 5.04359 5.08020 5.16473 5.19496 5.25859 5.29606 5.34183 5.50088 5.51360 5.58457 5.63643 5.78809 5.83688 6.28053 6.59752 6.87770 6.98421 7.23541 7.51130 8.98045 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032821 B = 0.007549 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.916682 B = 3708.240976 C = 4026.240664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.017 0.983 4 C -0.513 4.513 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.529 5.529 13 C 0.018 3.982 14 C 0.100 3.900 15 H 0.041 0.959 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.137 4.137 20 C 0.144 3.856 21 C -0.176 4.176 22 O -0.559 6.559 23 H 0.027 0.973 24 H 0.025 0.975 25 H 0.057 0.943 26 H 0.260 0.740 27 H 0.010 0.990 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.839 -1.299 16.209 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.035 0.965 4 C -0.552 4.552 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.201 1.201 12 N -0.252 5.252 13 C -0.130 4.130 14 C -0.009 4.009 15 H 0.058 0.942 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.175 4.175 20 C 0.102 3.898 21 C -0.233 4.233 22 O -0.365 6.365 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.925 -1.064 15.501 15.656 hybrid contribution -0.528 -0.369 -0.941 1.140 sum 1.398 -1.433 14.559 14.696 Atomic orbital electron populations 1.22243 1.00835 0.98881 0.99515 1.19116 0.89402 0.93680 0.87122 0.96504 1.21411 1.30197 1.12224 0.91346 0.93126 1.25677 0.95593 0.95916 1.01728 1.70010 1.38105 1.24258 1.23841 0.85634 0.78610 0.78700 0.78793 1.19720 1.20887 1.20062 1.62178 1.59148 1.02140 1.01722 1.22744 0.96396 0.91404 1.02438 1.21584 0.94945 0.93364 0.91018 0.94163 1.21708 1.00665 0.94949 0.97957 1.21553 0.99471 0.99441 0.94792 1.21425 0.98894 0.96178 0.98200 1.22212 1.03220 0.95405 0.96648 1.21129 0.83645 0.93167 0.91812 1.22655 1.02539 0.96098 1.02005 1.86750 1.16603 1.86943 1.46218 0.95415 0.95581 0.92424 0.93129 0.97174 0.93539 0.88858 0.93516 0.93771 0.91857 0.91749 0.92327 0.90146 0.90662 0.89324 0.92064 0.90481 0.91706 0.77614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.87 7.74 71.98 0.56 -7.32 16 2 C 0.21 11.32 1.81 44.17 0.08 11.40 16 3 H 0.02 1.01 5.79 -2.38 -0.01 1.00 16 4 C -0.51 -29.68 7.97 25.60 0.20 -29.48 16 5 H 0.05 2.95 6.91 -2.91 -0.02 2.93 16 6 C 0.01 0.50 5.30 84.65 0.45 0.95 16 7 N -0.92 -54.94 11.34 21.45 0.24 -54.70 16 8 Si 0.96 45.60 29.54 68.60 2.03 47.62 16 9 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 N -0.53 -23.50 4.35 -876.21 -3.82 -27.32 16 13 C 0.02 0.72 8.22 127.69 1.05 1.77 16 14 C 0.10 3.65 0.88 44.91 0.04 3.68 16 15 H 0.04 1.45 7.66 -2.38 -0.02 1.43 16 16 C -0.12 -4.41 3.64 30.59 0.11 -4.30 16 17 C -0.11 -3.24 5.92 30.60 0.18 -3.06 16 18 C -0.11 -2.51 5.78 30.59 0.18 -2.33 16 19 C -0.14 -2.90 4.89 30.59 0.15 -2.75 16 20 C 0.14 4.06 0.74 -10.80 -0.01 4.06 16 21 C -0.18 -4.29 7.12 71.98 0.51 -3.78 16 22 O -0.56 -17.60 11.50 -148.98 -1.71 -19.31 16 23 H 0.03 1.36 6.42 -2.39 -0.02 1.34 16 24 H 0.03 1.17 6.09 -2.39 -0.01 1.16 16 25 H 0.06 3.24 6.12 -2.39 -0.01 3.22 16 26 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.01 0.40 6.18 -2.39 -0.01 0.39 16 28 H 0.05 2.03 6.73 -2.39 -0.02 2.02 16 29 H 0.09 3.06 3.81 -2.39 -0.01 3.05 16 30 H 0.05 2.04 7.45 -2.39 -0.02 2.02 16 31 H 0.04 1.94 4.95 -2.39 -0.01 1.92 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.47 7.68 -2.39 -0.02 1.45 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.77 6.33 -2.38 -0.02 1.76 16 39 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 40 H 0.06 1.50 7.46 -2.38 -0.02 1.48 16 41 H 0.38 8.09 9.05 -74.05 -0.67 7.42 16 Total: -1.00 -66.35 293.80 0.59 -65.76 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.35 Total: 19.08 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 3.50 Total: -31.14 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -3.57 Total: -82.01 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.71 Total: -19.31 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -66.35 0.59 -65.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699658614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.217 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds