Wall clock time and date at job start Mon Mar 30 2020 04:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47320 * 2 1 4 4 C 1.52999 * 109.47218 * 119.99744 * 2 1 3 5 5 C 1.50706 * 109.46863 * 294.39238 * 4 2 1 6 6 H 1.07989 * 120.00280 * 356.10599 * 5 4 2 7 7 C 1.37878 * 119.99526 * 175.83058 * 5 4 2 8 8 N 1.31510 * 120.00625 * 0.27318 * 7 5 4 9 9 Si 1.86807 * 119.99689 * 180.27710 * 7 5 4 10 10 H 1.48495 * 109.47154 * 60.00287 * 9 7 5 11 11 H 1.48498 * 109.47078 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46929 * 299.99959 * 9 7 5 13 13 N 1.46899 * 109.47517 * 239.99766 * 2 1 3 14 14 C 1.47847 * 111.00335 * 183.73782 * 13 2 1 15 15 C 1.54905 * 104.79458 * 213.63703 * 14 13 2 16 16 C 1.55136 * 101.65564 * 37.06830 * 15 14 13 17 17 H 1.09003 * 110.85306 * 82.80054 * 16 15 14 18 18 C 1.53002 * 110.70673 * 205.96248 * 16 15 14 19 19 C 1.53003 * 109.47096 * 171.40235 * 18 16 15 20 20 C 1.52993 * 109.47223 * 291.40216 * 18 16 15 21 21 O 1.42903 * 109.46899 * 51.40333 * 18 16 15 22 22 C 1.47442 * 110.99652 * 62.89212 * 13 2 1 23 23 H 1.09002 * 109.47309 * 60.00248 * 1 2 3 24 24 H 1.08998 * 109.47063 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47239 * 300.00449 * 1 2 3 26 26 H 1.09003 * 109.47582 * 174.39559 * 4 2 1 27 27 H 1.08999 * 109.47163 * 54.39050 * 4 2 1 28 28 H 0.96998 * 120.00828 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.36956 * 332.46274 * 14 13 2 30 30 H 1.08996 * 110.36950 * 94.80812 * 14 13 2 31 31 H 1.09002 * 110.99153 * 278.97670 * 15 14 13 32 32 H 1.09000 * 111.02655 * 155.17676 * 15 14 13 33 33 H 1.09004 * 109.46899 * 59.99985 * 19 18 16 34 34 H 1.08999 * 109.46972 * 179.97438 * 19 18 16 35 35 H 1.09004 * 109.46878 * 300.00126 * 19 18 16 36 36 H 1.09000 * 109.47407 * 65.00228 * 20 18 16 37 37 H 1.08996 * 109.47214 * 185.00350 * 20 18 16 38 38 H 1.09006 * 109.47072 * 305.00549 * 20 18 16 39 39 H 0.96698 * 113.99626 * 60.00187 * 21 18 16 40 40 H 1.09000 * 109.89009 * 242.66583 * 22 13 2 41 41 H 1.08993 * 109.89372 * 3.86027 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6542 0.0650 2.4758 6 1 1.1561 1.0175 2.3721 7 6 1.9320 -0.4347 3.7304 8 7 2.5385 -1.5948 3.8568 9 14 1.4469 0.5361 5.2509 10 1 -0.0245 0.7358 5.2620 11 1 1.8534 -0.2128 6.4670 12 1 2.1256 1.8568 5.2323 13 7 2.0197 -0.6925 -1.1994 14 6 3.4949 -0.7906 -1.1894 15 6 3.9082 -0.6889 -2.6788 16 6 2.8862 0.3465 -3.2176 17 1 3.2170 1.3637 -3.0078 18 6 2.6593 0.1522 -4.7182 19 6 1.4980 1.0364 -5.1771 20 6 3.9279 0.5403 -5.4802 21 8 2.3471 -1.2177 -4.9792 22 6 1.6045 0.0150 -2.4245 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.1254 -0.8090 1.2006 27 1 1.5970 -1.7157 1.3010 28 1 2.7343 -1.9462 4.7395 29 1 3.9260 0.0320 -0.6189 30 1 3.8086 -1.7479 -0.7730 31 1 3.7938 -1.6488 -3.1822 32 1 4.9284 -0.3179 -2.7771 33 1 1.7362 2.0813 -4.9779 34 1 1.3367 0.8983 -6.2462 35 1 0.5942 0.7598 -4.6341 36 1 4.7331 -0.1464 -5.2191 37 1 3.7383 0.4871 -6.5523 38 1 4.2161 1.5568 -5.2122 39 1 1.5524 -1.5329 -4.5273 40 1 0.9549 -0.6258 -3.0207 41 1 1.0823 0.9351 -2.1625 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721887750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:32 Heat of formation + Delta-G solvation = -66.726770 kcal Electronic energy + Delta-G solvation = -18409.191080 eV Core-core repulsion = 15709.190764 eV Total energy + Delta-G solvation = -2700.000316 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80935 -37.23909 -34.03367 -32.56707 -31.72307 -29.18644 -28.21893 -27.37397 -26.39841 -23.60420 -21.75424 -21.13132 -19.75365 -18.91684 -16.98799 -16.41271 -15.76950 -15.11503 -14.54861 -14.42294 -13.95168 -13.55594 -13.10735 -12.83155 -12.74084 -12.38617 -12.27393 -12.09462 -12.01470 -11.70578 -11.66204 -11.31583 -11.00367 -10.90058 -10.81987 -10.58452 -10.49115 -10.41179 -10.23679 -9.94246 -9.76988 -9.18267 -9.09196 -8.32953 -7.65501 -5.98168 -4.00126 3.33196 3.38001 3.39884 4.17991 4.41240 4.54838 4.60535 4.75822 4.86116 5.15368 5.20096 5.37464 5.40404 5.49447 5.63124 5.64892 5.72147 5.77952 5.87953 5.97112 5.98048 6.03714 6.07255 6.12010 6.21342 6.23261 6.34741 6.54028 6.56106 6.70322 6.93393 7.12407 7.58479 7.60571 7.67917 7.79235 7.88684 8.10132 8.45548 9.06163 9.62918 11.13158 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047028 B = 0.005008 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.243942 B = 5589.651463 C = 5806.428800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.080 3.920 3 H 0.025 0.975 4 C 0.032 3.968 5 C -0.518 4.518 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.525 5.525 14 C 0.049 3.951 15 C -0.121 4.121 16 C -0.137 4.137 17 H 0.078 0.922 18 C 0.138 3.862 19 C -0.179 4.179 20 C -0.137 4.137 21 O -0.558 6.558 22 C 0.048 3.952 23 H 0.029 0.971 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.015 0.985 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.377 0.623 40 H 0.064 0.936 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.122 4.339 -16.583 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.027 4.027 3 H 0.043 0.957 4 C -0.006 4.006 5 C -0.557 4.557 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.249 5.249 14 C -0.078 4.078 15 C -0.159 4.159 16 C -0.157 4.157 17 H 0.096 0.904 18 C 0.097 3.903 19 C -0.237 4.237 20 C -0.194 4.194 21 O -0.365 6.365 22 C -0.080 4.080 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.493 3.761 -16.783 17.206 hybrid contribution -0.444 1.394 1.382 2.012 sum 0.049 5.155 -15.401 16.241 Atomic orbital electron populations 1.21738 0.95402 1.01553 0.99907 1.22015 0.94999 0.95051 0.90650 0.95668 1.19156 0.96120 0.96120 0.89175 1.21154 1.38514 1.05079 0.90948 0.92852 1.24979 0.95308 0.94967 0.98978 1.69955 1.41635 1.18286 1.23371 0.86698 0.78956 0.80038 0.82533 1.20256 1.21291 1.20358 1.63677 1.09880 1.49657 1.01721 1.22946 0.88155 1.01772 0.94964 1.22733 0.97563 0.99549 0.96028 1.23104 0.97443 1.00145 0.95017 0.90391 1.21020 0.94587 0.81881 0.92791 1.22522 0.98872 1.00489 1.01799 1.21732 0.96414 1.01294 0.99971 1.86500 1.50051 1.26216 1.73775 1.22821 0.95909 0.97082 0.92179 0.95193 0.92709 0.91646 0.96686 0.95530 0.92973 0.93601 0.90301 0.89911 0.91669 0.91789 0.92067 0.91967 0.91691 0.92265 0.91486 0.77413 0.91799 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.93 37.16 0.33 -2.16 16 2 C 0.08 1.69 1.63 -67.72 -0.11 1.58 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.03 0.82 4.38 -27.88 -0.12 0.70 16 5 C -0.52 -14.52 8.34 -34.44 -0.29 -14.81 16 6 H 0.05 1.45 7.25 -52.49 -0.38 1.07 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.52 -9.55 5.03 -223.30 -1.12 -10.67 16 14 C 0.05 0.86 5.27 -2.30 -0.01 0.85 16 15 C -0.12 -1.67 5.81 -24.60 -0.14 -1.81 16 16 C -0.14 -1.73 2.35 -88.80 -0.21 -1.94 16 17 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 18 C 0.14 1.51 0.83 -90.62 -0.08 1.43 16 19 C -0.18 -1.70 8.55 37.16 0.32 -1.38 16 20 C -0.14 -1.36 8.64 37.15 0.32 -1.03 16 21 O -0.56 -6.70 11.81 -35.23 -0.42 -7.12 16 22 C 0.05 0.70 4.60 -2.83 -0.01 0.68 16 23 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 1.34 7.08 -51.93 -0.37 0.97 16 26 H 0.01 0.41 6.66 -51.93 -0.35 0.06 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.05 0.86 7.48 -51.93 -0.39 0.47 16 30 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 31 H 0.08 1.18 7.09 -51.93 -0.37 0.81 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.59 6.91 -51.93 -0.36 0.23 16 36 H 0.06 0.68 7.73 -51.93 -0.40 0.28 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.38 3.90 7.26 45.56 0.33 4.23 16 40 H 0.06 0.84 5.75 -51.93 -0.30 0.54 16 41 H 0.05 0.77 6.54 -51.93 -0.34 0.43 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -30.06 311.88 -7.85 -37.91 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.63 Total: 1.01 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.10 Total: -16.30 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.39 Total: -36.81 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.42 Total: -7.12 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.06 -7.85 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721887750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.816 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds