Wall clock time and date at job start Mon Mar 30 2020 04:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47320 * 2 1 4 4 C 1.52999 * 109.47218 * 119.99744 * 2 1 3 5 5 C 1.50706 * 109.46863 * 294.39238 * 4 2 1 6 6 H 1.07989 * 120.00280 * 356.10599 * 5 4 2 7 7 C 1.37878 * 119.99526 * 175.83058 * 5 4 2 8 8 N 1.31510 * 120.00625 * 0.27318 * 7 5 4 9 9 Si 1.86807 * 119.99689 * 180.27710 * 7 5 4 10 10 H 1.48495 * 109.47154 * 60.00287 * 9 7 5 11 11 H 1.48498 * 109.47078 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46929 * 299.99959 * 9 7 5 13 13 N 1.46899 * 109.47517 * 239.99766 * 2 1 3 14 14 C 1.47847 * 111.00335 * 183.73782 * 13 2 1 15 15 C 1.54905 * 104.79458 * 213.63703 * 14 13 2 16 16 C 1.55136 * 101.65564 * 37.06830 * 15 14 13 17 17 H 1.09003 * 110.85306 * 82.80054 * 16 15 14 18 18 C 1.53002 * 110.70673 * 205.96248 * 16 15 14 19 19 C 1.53003 * 109.47096 * 171.40235 * 18 16 15 20 20 C 1.52993 * 109.47223 * 291.40216 * 18 16 15 21 21 O 1.42903 * 109.46899 * 51.40333 * 18 16 15 22 22 C 1.47442 * 110.99652 * 62.89212 * 13 2 1 23 23 H 1.09002 * 109.47309 * 60.00248 * 1 2 3 24 24 H 1.08998 * 109.47063 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47239 * 300.00449 * 1 2 3 26 26 H 1.09003 * 109.47582 * 174.39559 * 4 2 1 27 27 H 1.08999 * 109.47163 * 54.39050 * 4 2 1 28 28 H 0.96998 * 120.00828 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.36956 * 332.46274 * 14 13 2 30 30 H 1.08996 * 110.36950 * 94.80812 * 14 13 2 31 31 H 1.09002 * 110.99153 * 278.97670 * 15 14 13 32 32 H 1.09000 * 111.02655 * 155.17676 * 15 14 13 33 33 H 1.09004 * 109.46899 * 59.99985 * 19 18 16 34 34 H 1.08999 * 109.46972 * 179.97438 * 19 18 16 35 35 H 1.09004 * 109.46878 * 300.00126 * 19 18 16 36 36 H 1.09000 * 109.47407 * 65.00228 * 20 18 16 37 37 H 1.08996 * 109.47214 * 185.00350 * 20 18 16 38 38 H 1.09006 * 109.47072 * 305.00549 * 20 18 16 39 39 H 0.96698 * 113.99626 * 60.00187 * 21 18 16 40 40 H 1.09000 * 109.89009 * 242.66583 * 22 13 2 41 41 H 1.08993 * 109.89372 * 3.86027 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6542 0.0650 2.4758 6 1 1.1561 1.0175 2.3721 7 6 1.9320 -0.4347 3.7304 8 7 2.5385 -1.5948 3.8568 9 14 1.4469 0.5361 5.2509 10 1 -0.0245 0.7358 5.2620 11 1 1.8534 -0.2128 6.4670 12 1 2.1256 1.8568 5.2323 13 7 2.0197 -0.6925 -1.1994 14 6 3.4949 -0.7906 -1.1894 15 6 3.9082 -0.6889 -2.6788 16 6 2.8862 0.3465 -3.2176 17 1 3.2170 1.3637 -3.0078 18 6 2.6593 0.1522 -4.7182 19 6 1.4980 1.0364 -5.1771 20 6 3.9279 0.5403 -5.4802 21 8 2.3471 -1.2177 -4.9792 22 6 1.6045 0.0150 -2.4245 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.1254 -0.8090 1.2006 27 1 1.5970 -1.7157 1.3010 28 1 2.7343 -1.9462 4.7395 29 1 3.9260 0.0320 -0.6189 30 1 3.8086 -1.7479 -0.7730 31 1 3.7938 -1.6488 -3.1822 32 1 4.9284 -0.3179 -2.7771 33 1 1.7362 2.0813 -4.9779 34 1 1.3367 0.8983 -6.2462 35 1 0.5942 0.7598 -4.6341 36 1 4.7331 -0.1464 -5.2191 37 1 3.7383 0.4871 -6.5523 38 1 4.2161 1.5568 -5.2122 39 1 1.5524 -1.5329 -4.5273 40 1 0.9549 -0.6258 -3.0207 41 1 1.0823 0.9351 -2.1625 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721887750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:31 Heat of formation + Delta-G solvation = -87.717537 kcal Electronic energy + Delta-G solvation = -18410.101308 eV Core-core repulsion = 15709.190764 eV Total energy + Delta-G solvation = -2700.910544 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96105 -38.47778 -35.71747 -34.15000 -33.00374 -30.63115 -29.48958 -28.67074 -27.73910 -25.46233 -23.08501 -22.41514 -20.94771 -20.35505 -18.66365 -17.85742 -17.06730 -16.49351 -16.22610 -15.51952 -15.48270 -14.88095 -14.41763 -14.24416 -13.88962 -13.86614 -13.48502 -13.23592 -13.09332 -13.03797 -12.88570 -12.75734 -12.62627 -12.45992 -12.34637 -12.12659 -11.94816 -11.77850 -11.63626 -11.31075 -11.19584 -11.07998 -10.69298 -10.53436 -9.13347 -8.18474 -6.28889 1.39446 1.42336 1.50114 2.40430 3.13875 3.14988 3.35310 3.59222 3.68147 3.92987 4.14558 4.23703 4.27930 4.41127 4.44721 4.48473 4.59189 4.66632 4.71990 4.79141 4.91812 4.95176 4.98129 5.03097 5.07826 5.11997 5.12962 5.22871 5.27897 5.37577 5.41049 5.46126 5.47929 5.71268 5.79041 6.09740 6.28277 6.40117 6.87081 6.87297 7.39491 8.93557 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047028 B = 0.005008 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.243942 B = 5589.651463 C = 5806.428800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.091 3.909 3 H 0.019 0.981 4 C 0.041 3.959 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.536 5.536 14 C 0.047 3.953 15 C -0.108 4.108 16 C -0.128 4.128 17 H 0.083 0.917 18 C 0.140 3.860 19 C -0.176 4.176 20 C -0.139 4.139 21 O -0.570 6.570 22 C 0.047 3.953 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.052 0.948 26 H -0.012 1.012 27 H -0.009 1.009 28 H 0.262 0.738 29 H 0.027 0.973 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.383 0.617 40 H 0.082 0.918 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 6.021 -17.855 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.017 4.017 3 H 0.037 0.963 4 C 0.003 3.997 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.261 5.261 14 C -0.081 4.081 15 C -0.146 4.146 16 C -0.147 4.147 17 H 0.101 0.899 18 C 0.100 3.900 19 C -0.234 4.234 20 C -0.196 4.196 21 O -0.379 6.379 22 C -0.080 4.080 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.007 0.993 27 H 0.009 0.991 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.232 0.768 40 H 0.100 0.900 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.333 5.453 -18.077 18.885 hybrid contribution -0.157 0.820 1.748 1.937 sum -0.490 6.273 -16.329 17.499 Atomic orbital electron populations 1.21639 0.93815 1.01323 1.01013 1.21718 0.96145 0.93929 0.89903 0.96259 1.18977 0.94237 0.94741 0.91708 1.21549 1.38342 1.05468 0.91922 0.92150 1.25931 0.95117 0.95961 1.02592 1.70105 1.42866 1.20126 1.24242 0.85547 0.79112 0.78620 0.78053 1.19039 1.20975 1.19273 1.63592 1.10190 1.50160 1.02135 1.22893 0.88038 0.99777 0.97408 1.22630 0.98840 1.00178 0.92959 1.23067 0.95705 0.99795 0.96172 0.89871 1.21075 0.95809 0.81809 0.91341 1.22487 0.98082 1.00567 1.02226 1.21773 0.95589 1.01898 1.00307 1.86500 1.50551 1.26923 1.73920 1.22923 0.97134 0.97257 0.90687 0.91620 0.93570 0.92933 0.99339 0.99104 0.92879 0.95437 0.92655 0.90072 0.90182 0.90911 0.91369 0.91853 0.92471 0.91552 0.90107 0.76751 0.89967 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 8.93 71.98 0.64 -3.93 16 2 C 0.09 3.88 1.63 44.91 0.07 3.95 16 3 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 4 C 0.04 2.21 4.38 29.85 0.13 2.34 16 5 C -0.53 -30.51 8.34 25.60 0.21 -30.30 16 6 H 0.06 3.29 7.25 -2.92 -0.02 3.27 16 7 C 0.00 0.10 5.46 84.66 0.46 0.56 16 8 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 9 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 N -0.54 -19.51 5.03 -860.38 -4.33 -23.84 16 14 C 0.05 1.67 5.27 86.77 0.46 2.13 16 15 C -0.11 -2.88 5.81 31.98 0.19 -2.70 16 16 C -0.13 -2.94 2.35 -9.61 -0.02 -2.96 16 17 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 18 C 0.14 2.68 0.83 -10.79 -0.01 2.67 16 19 C -0.18 -2.76 8.55 71.98 0.62 -2.15 16 20 C -0.14 -2.36 8.64 71.98 0.62 -1.74 16 21 O -0.57 -12.39 11.81 -148.98 -1.76 -14.15 16 22 C 0.05 1.27 4.60 86.65 0.40 1.67 16 23 H 0.06 2.00 6.68 -2.39 -0.02 1.99 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.05 2.11 7.08 -2.39 -0.02 2.09 16 26 H -0.01 -0.68 6.66 -2.39 -0.02 -0.70 16 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 28 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.03 1.07 7.48 -2.39 -0.02 1.05 16 30 H 0.05 2.19 8.11 -2.39 -0.02 2.17 16 31 H 0.08 2.22 7.09 -2.39 -0.02 2.20 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 0.98 6.91 -2.38 -0.02 0.96 16 36 H 0.06 1.06 7.73 -2.39 -0.02 1.04 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.38 7.05 7.26 -74.06 -0.54 6.51 16 40 H 0.08 1.93 5.75 -2.39 -0.01 1.92 16 41 H 0.06 1.49 6.54 -2.39 -0.02 1.48 16 Total: -1.00 -65.77 311.88 0.44 -65.32 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.45 Total: 14.00 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 3.77 Total: -30.45 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -4.04 Total: -81.24 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -1.76 Total: -14.15 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -65.77 0.44 -65.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721887750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.393 kcal (2) G-P(sol) polarization free energy of solvation -65.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds