Wall clock time and date at job start Mon Mar 30 2020 04:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 C 1.53010 * 109.47177 * 119.99869 * 2 1 3 5 5 H 1.08999 * 110.82532 * 303.64982 * 4 2 1 6 6 C 1.54994 * 110.90309 * 67.29607 * 4 2 1 7 7 O 1.44380 * 103.48616 * 155.22325 * 6 4 2 8 8 C 1.43745 * 106.97796 * 319.93833 * 7 6 4 9 9 C 1.54096 * 107.28996 * 26.51311 * 8 7 6 10 10 H 1.09001 * 110.49137 * 239.16162 * 9 8 7 11 11 N 1.46897 * 110.48769 * 116.65089 * 9 8 7 12 12 C 1.46904 * 111.00568 * 86.45068 * 11 9 8 13 13 H 1.09008 * 109.46730 * 35.00093 * 12 11 9 14 14 C 1.52994 * 109.47162 * 275.00494 * 12 11 9 15 15 C 1.52997 * 109.47449 * 154.99924 * 12 11 9 16 16 C 1.50701 * 109.47212 * 295.00105 * 15 12 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 12 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 H 1.08998 * 109.47621 * 299.99648 * 1 2 3 25 25 H 1.08994 * 109.47481 * 60.00498 * 1 2 3 26 26 H 1.09008 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47181 * 239.99719 * 2 1 3 28 28 H 1.08998 * 109.46878 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47196 * 299.99862 * 3 2 1 30 30 H 1.08998 * 109.46581 * 59.99716 * 3 2 1 31 31 H 1.08993 * 110.62347 * 36.72760 * 6 4 2 32 32 H 1.08998 * 110.75264 * 273.78391 * 6 4 2 33 33 H 1.09001 * 109.87955 * 267.09364 * 8 7 6 34 34 H 1.08998 * 109.88154 * 145.94013 * 8 7 6 35 35 H 1.00900 * 111.00439 * 210.40451 * 11 9 8 36 36 H 1.08996 * 109.47654 * 59.99214 * 14 12 11 37 37 H 1.09000 * 109.47476 * 179.97438 * 14 12 11 38 38 H 1.09008 * 109.46970 * 299.99452 * 14 12 11 39 39 H 1.09002 * 109.47153 * 175.00107 * 15 12 11 40 40 H 1.09001 * 109.46832 * 55.00298 * 15 12 11 41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6369 -0.2636 2.1527 6 6 1.6974 -2.2319 1.1944 7 8 2.6972 -2.8350 2.0436 8 6 3.9369 -2.1571 1.7792 9 6 3.5876 -0.7407 1.2829 10 1 3.9949 -0.5744 0.2857 11 7 4.0942 0.2716 2.2191 12 6 5.4876 0.6219 1.9126 13 1 5.6409 0.5913 0.8338 14 6 6.4258 -0.3791 2.5896 15 6 5.7851 2.0306 2.4302 16 6 4.9474 3.0305 1.6755 17 1 4.2702 2.6948 0.9041 18 6 5.0448 4.3738 1.9705 19 7 5.8692 4.7825 2.9102 20 14 4.0060 5.6131 1.0355 21 1 2.5672 5.3050 1.2368 22 1 4.2949 6.9803 1.5379 23 1 4.3302 5.5392 -0.4118 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.7824 -2.6079 0.1749 32 1 0.6978 -2.4158 1.5881 33 1 4.4952 -2.6918 1.0107 34 1 4.5274 -2.0945 2.6932 35 1 3.5066 1.0919 2.2177 36 1 6.2139 -1.3826 2.2209 37 1 7.4597 -0.1195 2.3618 38 1 6.2725 -0.3484 3.6684 39 1 6.8412 2.2564 2.2826 40 1 5.5469 2.0851 3.4925 41 1 5.9379 5.7276 3.1175 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829426470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:39 Heat of formation + Delta-G solvation = -72.652893 kcal Electronic energy + Delta-G solvation = -18760.895776 eV Core-core repulsion = 16060.638484 eV Total energy + Delta-G solvation = -2700.257292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76525 -36.26325 -35.47738 -32.77855 -30.91492 -28.78016 -27.79109 -27.09893 -26.70354 -23.07065 -22.69126 -20.88697 -19.98277 -19.14543 -16.52264 -16.34790 -15.79158 -15.23385 -14.70023 -14.50436 -14.15263 -13.43678 -13.27838 -13.20433 -12.98581 -12.49520 -12.11696 -11.96877 -11.77976 -11.66558 -11.30344 -11.22037 -11.12524 -10.97457 -10.66064 -10.61597 -10.45163 -10.38302 -10.16499 -10.09783 -9.44619 -9.19193 -9.06935 -8.41260 -7.72746 -6.04471 -4.07548 3.27771 3.33614 3.34497 4.13877 4.40530 4.61245 4.66699 4.94944 5.07557 5.20006 5.32350 5.35416 5.43801 5.50443 5.67073 5.75247 5.80380 5.84588 5.92176 5.95703 6.01955 6.05662 6.15113 6.16579 6.21455 6.28066 6.32204 6.47350 6.56953 6.62263 6.90890 6.92672 7.06932 7.51546 7.63747 7.95432 8.03675 8.24376 8.35178 8.98837 9.56607 11.06538 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021450 B = 0.008330 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.054764 B = 3360.471218 C = 4488.908398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.156 4.156 4 C -0.119 4.119 5 H 0.094 0.906 6 C 0.054 3.946 7 O -0.381 6.381 8 C 0.052 3.948 9 C 0.060 3.940 10 H 0.052 0.948 11 N -0.672 5.672 12 C 0.086 3.914 13 H 0.029 0.971 14 C -0.141 4.141 15 C 0.020 3.980 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.885 3.115 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.278 1.278 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.359 0.641 36 H 0.039 0.961 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.021 0.979 40 H 0.026 0.974 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -10.796 -5.264 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.213 4.213 4 C -0.138 4.138 5 H 0.112 0.888 6 C -0.023 4.023 7 O -0.300 6.300 8 C -0.025 4.025 9 C -0.051 4.051 10 H 0.070 0.930 11 N -0.307 5.307 12 C -0.023 4.023 13 H 0.047 0.953 14 C -0.198 4.198 15 C -0.017 4.017 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.713 3.287 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.204 1.204 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.182 0.818 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.044 0.956 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.397 -11.240 -4.533 14.199 hybrid contribution -0.539 1.572 -1.506 2.243 sum -7.936 -9.668 -6.038 13.889 Atomic orbital electron populations 1.21856 0.95254 1.01333 1.01944 1.21091 0.95577 0.96919 0.96816 1.22009 1.02462 0.94850 1.01980 1.22979 0.95301 0.95972 0.99521 0.88761 1.23504 0.92894 0.91404 0.94484 1.88844 1.19015 1.59150 1.62946 1.23474 0.86552 0.91041 1.01469 1.22927 0.93394 0.93775 0.94974 0.92970 1.60659 1.04330 1.15814 1.49940 1.21704 0.86913 0.97130 0.96588 0.95286 1.21927 0.98550 0.98038 1.01330 1.19285 0.97098 0.88187 0.97174 1.21227 1.23808 0.91666 1.19710 0.92513 1.24972 0.95397 0.98532 0.95079 1.69948 1.36677 1.15488 1.30817 0.86767 0.80980 0.80724 0.80222 1.20095 1.21307 1.20360 0.92433 0.92780 0.92925 0.91494 0.91304 0.93016 0.92014 0.92717 0.89441 0.93440 0.88369 0.81773 0.94166 0.93322 0.92525 0.96071 0.95611 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.05 37.15 0.34 -1.23 16 2 C -0.09 -1.08 2.34 -90.62 -0.21 -1.29 16 3 C -0.16 -2.34 8.06 37.16 0.30 -2.04 16 4 C -0.12 -1.64 2.15 -88.61 -0.19 -1.83 16 5 H 0.09 1.41 8.01 -51.93 -0.42 1.00 16 6 C 0.05 0.69 6.39 38.21 0.24 0.93 16 7 O -0.38 -5.94 11.52 -35.23 -0.41 -6.35 16 8 C 0.05 0.79 6.29 37.73 0.24 1.03 16 9 C 0.06 0.95 2.02 -66.19 -0.13 0.82 16 10 H 0.05 0.85 6.87 -51.93 -0.36 0.49 16 11 N -0.67 -12.52 5.95 -98.15 -0.58 -13.11 16 12 C 0.09 1.73 2.59 -67.71 -0.18 1.56 16 13 H 0.03 0.60 7.47 -51.92 -0.39 0.21 16 14 C -0.14 -2.48 8.79 37.15 0.33 -2.15 16 15 C 0.02 0.49 4.57 -27.88 -0.13 0.37 16 16 C -0.53 -13.90 8.12 -34.44 -0.28 -14.18 16 17 H 0.06 1.42 5.58 -52.49 -0.29 1.13 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 20 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.49 7.49 -51.92 -0.39 0.10 16 27 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 28 H 0.07 1.19 4.98 -51.93 -0.26 0.93 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.63 8.01 -51.93 -0.42 0.21 16 32 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.58 6.26 -51.93 -0.33 1.26 16 35 H 0.36 7.25 5.83 -39.29 -0.23 7.02 16 36 H 0.04 0.62 5.86 -51.93 -0.30 0.32 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -28.19 311.57 -7.51 -35.69 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.15 Total: 4.89 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 0.23 Total: -16.40 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.15 Total: -38.49 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.41 Total: -6.35 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.19 -7.51 -35.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829426470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.960 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds