Wall clock time and date at job start Mon Mar 30 2020 04:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 C 1.53010 * 109.47177 * 119.99869 * 2 1 3 5 5 H 1.08999 * 110.82532 * 303.64982 * 4 2 1 6 6 C 1.54994 * 110.90309 * 67.29607 * 4 2 1 7 7 O 1.44380 * 103.48616 * 155.22325 * 6 4 2 8 8 C 1.43745 * 106.97796 * 319.93833 * 7 6 4 9 9 C 1.54096 * 107.28996 * 26.51311 * 8 7 6 10 10 H 1.09001 * 110.49137 * 239.16162 * 9 8 7 11 11 N 1.46897 * 110.48769 * 116.65089 * 9 8 7 12 12 C 1.46904 * 111.00568 * 86.45068 * 11 9 8 13 13 H 1.09008 * 109.46730 * 35.00093 * 12 11 9 14 14 C 1.52994 * 109.47162 * 275.00494 * 12 11 9 15 15 C 1.52997 * 109.47449 * 154.99924 * 12 11 9 16 16 C 1.50701 * 109.47212 * 295.00105 * 15 12 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 12 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 H 1.08998 * 109.47621 * 299.99648 * 1 2 3 25 25 H 1.08994 * 109.47481 * 60.00498 * 1 2 3 26 26 H 1.09008 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47181 * 239.99719 * 2 1 3 28 28 H 1.08998 * 109.46878 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47196 * 299.99862 * 3 2 1 30 30 H 1.08998 * 109.46581 * 59.99716 * 3 2 1 31 31 H 1.08993 * 110.62347 * 36.72760 * 6 4 2 32 32 H 1.08998 * 110.75264 * 273.78391 * 6 4 2 33 33 H 1.09001 * 109.87955 * 267.09364 * 8 7 6 34 34 H 1.08998 * 109.88154 * 145.94013 * 8 7 6 35 35 H 1.00900 * 111.00439 * 210.40451 * 11 9 8 36 36 H 1.08996 * 109.47654 * 59.99214 * 14 12 11 37 37 H 1.09000 * 109.47476 * 179.97438 * 14 12 11 38 38 H 1.09008 * 109.46970 * 299.99452 * 14 12 11 39 39 H 1.09002 * 109.47153 * 175.00107 * 15 12 11 40 40 H 1.09001 * 109.46832 * 55.00298 * 15 12 11 41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6369 -0.2636 2.1527 6 6 1.6974 -2.2319 1.1944 7 8 2.6972 -2.8350 2.0436 8 6 3.9369 -2.1571 1.7792 9 6 3.5876 -0.7407 1.2829 10 1 3.9949 -0.5744 0.2857 11 7 4.0942 0.2716 2.2191 12 6 5.4876 0.6219 1.9126 13 1 5.6409 0.5913 0.8338 14 6 6.4258 -0.3791 2.5896 15 6 5.7851 2.0306 2.4302 16 6 4.9474 3.0305 1.6755 17 1 4.2702 2.6948 0.9041 18 6 5.0448 4.3738 1.9705 19 7 5.8692 4.7825 2.9102 20 14 4.0060 5.6131 1.0355 21 1 2.5672 5.3050 1.2368 22 1 4.2949 6.9803 1.5379 23 1 4.3302 5.5392 -0.4118 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.7824 -2.6079 0.1749 32 1 0.6978 -2.4158 1.5881 33 1 4.4952 -2.6918 1.0107 34 1 4.5274 -2.0945 2.6932 35 1 3.5066 1.0919 2.2177 36 1 6.2139 -1.3826 2.2209 37 1 7.4597 -0.1195 2.3618 38 1 6.2725 -0.3484 3.6684 39 1 6.8412 2.2564 2.2826 40 1 5.5469 2.0851 3.4925 41 1 5.9379 5.7276 3.1175 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829426470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:38 Heat of formation + Delta-G solvation = -90.502573 kcal Electronic energy + Delta-G solvation = -18761.669796 eV Core-core repulsion = 16060.638484 eV Total energy + Delta-G solvation = -2701.031312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94829 -37.79305 -36.61034 -34.76073 -32.42518 -29.94696 -29.42425 -28.55410 -27.84307 -25.00821 -23.78894 -22.13054 -21.34497 -20.55223 -18.52926 -17.60860 -17.00184 -16.57076 -16.40730 -16.01394 -15.45672 -14.83046 -14.63605 -14.31814 -14.19997 -13.78429 -13.66019 -13.50028 -13.28830 -13.03186 -12.82851 -12.70626 -12.56411 -12.45656 -12.35785 -12.10711 -11.83819 -11.55140 -11.39482 -11.34834 -11.14276 -10.96331 -10.57454 -10.53592 -9.23130 -8.17589 -6.26928 1.38834 1.40216 1.47455 2.40178 3.04635 3.12837 3.33107 3.53048 3.84129 3.99470 4.14626 4.22443 4.32119 4.40155 4.43593 4.51565 4.61814 4.69079 4.76813 4.78749 4.82367 4.85906 4.90580 4.95913 5.06145 5.07559 5.16090 5.23577 5.23971 5.35090 5.40142 5.48952 5.53432 5.60842 5.86104 5.96029 6.23732 6.43354 6.63646 6.88955 7.41620 8.94262 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021450 B = 0.008330 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.054764 B = 3360.471218 C = 4488.908398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.154 4.154 4 C -0.114 4.114 5 H 0.079 0.921 6 C 0.056 3.944 7 O -0.398 6.398 8 C 0.055 3.945 9 C 0.058 3.942 10 H 0.052 0.948 11 N -0.675 5.675 12 C 0.097 3.903 13 H 0.026 0.974 14 C -0.134 4.134 15 C 0.026 3.974 16 C -0.530 4.530 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.951 3.049 21 H -0.263 1.263 22 H -0.289 1.289 23 H -0.269 1.269 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.348 0.652 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.048 0.952 39 H -0.006 1.006 40 H -0.006 1.006 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 -12.073 -6.962 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.212 4.212 4 C -0.133 4.133 5 H 0.097 0.903 6 C -0.020 4.020 7 O -0.317 6.317 8 C -0.022 4.022 9 C -0.053 4.053 10 H 0.070 0.930 11 N -0.309 5.309 12 C -0.013 4.013 13 H 0.044 0.956 14 C -0.191 4.191 15 C -0.011 4.011 16 C -0.568 4.568 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.573 5.573 20 Si 0.776 3.224 21 H -0.188 1.188 22 H -0.215 1.215 23 H -0.194 1.194 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.169 0.831 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.012 0.988 40 H 0.013 0.987 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.168 -12.544 -6.242 16.745 hybrid contribution 0.018 1.943 -0.963 2.169 sum -9.151 -10.601 -7.206 15.749 Atomic orbital electron populations 1.21829 0.93399 1.02678 1.02130 1.21046 0.97029 0.95008 0.96568 1.21973 1.00661 0.96808 1.01714 1.22935 0.93607 0.97240 0.99565 0.90267 1.23678 0.93096 0.89904 0.95358 1.88827 1.19516 1.59413 1.63947 1.23407 0.86786 0.90635 1.01394 1.23010 0.94954 0.93184 0.94131 0.93000 1.60685 1.03266 1.15759 1.51210 1.21486 0.88615 0.94948 0.96243 0.95584 1.21851 0.98062 0.98619 1.00618 1.19153 0.95228 0.91372 0.95382 1.21631 1.23541 0.92065 1.19579 0.91231 1.25851 0.96657 1.00795 0.96001 1.70096 1.38649 1.15806 1.32732 0.85710 0.79757 0.77875 0.79051 1.18780 1.21460 1.19415 0.93024 0.91889 0.91012 0.90244 0.93920 0.91945 0.93576 0.90710 0.87536 0.91655 0.89565 0.83073 0.91606 0.92957 0.93287 0.98804 0.98715 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.05 71.98 0.65 -1.95 16 2 C -0.08 -1.77 2.34 -10.79 -0.03 -1.80 16 3 C -0.15 -4.45 8.06 71.98 0.58 -3.87 16 4 C -0.11 -2.93 2.15 -9.49 -0.02 -2.95 16 5 H 0.08 2.29 8.01 -2.39 -0.02 2.27 16 6 C 0.06 1.24 6.39 72.66 0.46 1.71 16 7 O -0.40 -11.43 11.52 -148.98 -1.72 -13.15 16 8 C 0.05 1.56 6.29 72.35 0.46 2.02 16 9 C 0.06 1.74 2.02 45.90 0.09 1.83 16 10 H 0.05 1.59 6.87 -2.39 -0.02 1.58 16 11 N -0.67 -25.20 5.95 -464.43 -2.76 -27.96 16 12 C 0.10 3.94 2.59 44.91 0.12 4.05 16 13 H 0.03 1.08 7.47 -2.38 -0.02 1.06 16 14 C -0.13 -4.67 8.79 71.98 0.63 -4.04 16 15 C 0.03 1.35 4.57 29.85 0.14 1.48 16 16 C -0.53 -28.55 8.12 25.60 0.21 -28.34 16 17 H 0.07 3.50 5.58 -2.91 -0.02 3.49 16 18 C 0.00 0.27 5.46 84.66 0.46 0.74 16 19 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 20 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.05 7.49 -2.38 -0.02 1.03 16 27 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 28 H 0.04 1.44 4.98 -2.39 -0.01 1.42 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.39 8.01 -2.39 -0.02 1.38 16 32 H 0.11 1.97 8.08 -2.39 -0.02 1.95 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 2.65 6.26 -2.39 -0.01 2.64 16 35 H 0.35 14.28 5.83 -89.69 -0.52 13.76 16 36 H 0.07 1.95 5.86 -2.39 -0.01 1.94 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 39 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -61.37 311.57 2.05 -59.32 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.47 Total: 23.56 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 3.75 Total: -31.12 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -2.48 Total: -83.92 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.72 Total: -13.15 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -61.37 2.05 -59.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829426470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.186 kcal (2) G-P(sol) polarization free energy of solvation -61.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds