Wall clock time and date at job start Mon Mar 30 2020 03:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.52739 * 2 1 4 4 C 1.53093 * 109.57472 * 120.15672 * 2 1 3 5 5 O 1.42904 * 109.41435 * 177.54237 * 4 2 1 6 6 C 1.42901 * 114.10326 * 298.84314 * 5 4 2 7 7 C 1.53091 * 109.41327 * 61.15695 * 6 5 4 8 8 H 1.08999 * 109.57207 * 62.33098 * 7 6 5 9 9 C 1.52997 * 109.52301 * 182.48978 * 7 6 5 10 10 C 1.53177 * 109.52182 * 239.87498 * 2 1 3 11 11 H 1.09000 * 109.54513 * 302.91448 * 10 2 1 12 12 N 1.46893 * 109.54651 * 63.18755 * 10 2 1 13 13 C 1.46900 * 111.00223 * 54.65423 * 12 10 2 14 14 C 1.52997 * 109.47254 * 174.54483 * 13 12 10 15 15 C 1.53005 * 109.47299 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47161 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00405 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00075 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99932 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00237 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46895 * 60.00519 * 20 18 16 22 22 H 1.48501 * 109.47061 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47165 * 300.00250 * 20 18 16 24 24 H 1.08994 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47009 * 300.00236 * 1 2 3 26 26 H 1.08999 * 109.47018 * 59.99960 * 1 2 3 27 27 H 1.08993 * 109.48051 * 297.53264 * 4 2 1 28 28 H 1.09007 * 109.47739 * 57.56447 * 4 2 1 29 29 H 1.09007 * 109.47969 * 301.17735 * 6 5 4 30 30 H 1.08994 * 109.48302 * 181.14398 * 6 5 4 31 31 H 1.09003 * 109.47051 * 184.73193 * 9 7 6 32 32 H 1.09008 * 109.47104 * 304.72800 * 9 7 6 33 33 H 1.09000 * 109.47347 * 64.72974 * 9 7 6 34 34 H 1.00905 * 110.99977 * 290.69966 * 12 10 2 35 35 H 1.09003 * 109.47361 * 294.54487 * 13 12 10 36 36 H 1.09000 * 109.47064 * 54.54557 * 13 12 10 37 37 H 1.09000 * 109.47186 * 299.99797 * 14 13 12 38 38 H 1.09000 * 109.47024 * 60.00050 * 14 13 12 39 39 H 1.09000 * 109.46634 * 299.99888 * 15 14 13 40 40 H 1.08995 * 109.47355 * 59.99463 * 15 14 13 41 41 H 0.97000 * 120.00138 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0429 -0.7246 1.2472 5 8 3.4708 -0.7728 1.2151 6 6 4.0058 -1.4794 0.0941 7 6 3.5717 -0.7851 -1.1994 8 1 3.9773 0.2263 -1.2247 9 6 4.0912 -1.5746 -2.4026 10 6 2.0418 -0.7246 -1.2487 11 1 1.6376 -1.7365 -1.2745 12 7 1.6175 0.0068 -2.4499 13 6 2.0438 1.4113 -2.3891 14 6 1.7054 2.1046 -3.7104 15 6 2.1499 3.5673 -3.6473 16 6 1.8172 4.2499 -4.9489 17 1 1.3364 3.6962 -5.7417 18 6 2.1256 5.5819 -5.1273 19 7 2.7107 6.2565 -4.1617 20 14 1.7139 6.4280 -6.7410 21 1 0.2485 6.3650 -6.9730 22 1 2.1452 7.8477 -6.6797 23 1 2.4211 5.7438 -7.8532 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7171 -0.1888 2.1387 28 1 1.6453 -1.7394 1.2673 29 1 3.6338 -2.5041 0.0991 30 1 5.0940 -1.4873 0.1550 31 1 3.8544 -1.0360 -3.3202 32 1 5.1715 -1.6940 -2.3198 33 1 3.6178 -2.5562 -2.4250 34 1 0.6196 -0.0629 -2.5820 35 1 1.5253 1.9133 -1.5722 36 1 3.1195 1.4575 -2.2196 37 1 2.2238 1.6026 -4.5273 38 1 0.6296 2.0584 -3.8798 39 1 1.6318 4.0695 -2.8303 40 1 3.2256 3.6132 -3.4779 41 1 2.9280 7.1934 -4.2873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924943456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:39 Heat of formation + Delta-G solvation = -75.448682 kcal Electronic energy + Delta-G solvation = -18130.409812 eV Core-core repulsion = 15430.031286 eV Total energy + Delta-G solvation = -2700.378526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.11277 -36.69228 -34.06969 -33.67559 -32.37871 -30.35631 -27.06592 -26.73829 -25.87690 -23.78760 -22.63219 -21.10209 -20.38260 -19.15343 -16.63894 -16.25557 -16.16532 -15.41935 -15.01594 -14.57650 -14.49469 -14.18235 -13.81800 -13.17042 -12.93369 -12.48288 -12.31768 -12.19569 -11.98564 -11.75851 -11.63163 -11.47858 -11.05321 -10.90238 -10.83143 -10.63714 -10.53780 -10.51056 -10.08880 -9.63537 -9.56928 -9.28423 -9.03806 -8.31358 -8.07610 -5.96649 -3.98805 3.35425 3.39525 3.42243 3.79746 4.36588 4.50196 4.56767 4.70333 4.74675 5.00624 5.09156 5.29399 5.32630 5.38890 5.39899 5.50648 5.55427 5.59195 5.65405 5.76121 5.79710 5.87805 5.96610 6.03659 6.09216 6.17765 6.30834 6.42137 6.47552 6.75557 6.81885 7.11015 7.17716 7.36439 7.65288 7.71711 7.87331 8.03919 8.47248 9.08318 9.64992 11.14763 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034603 B = 0.004608 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.982788 B = 6074.817703 C = 6247.682103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.168 4.168 3 H 0.087 0.913 4 C 0.071 3.929 5 O -0.384 6.384 6 C 0.066 3.934 7 C -0.122 4.122 8 H 0.083 0.917 9 C -0.134 4.134 10 C 0.098 3.902 11 H 0.075 0.925 12 N -0.679 5.679 13 C 0.054 3.946 14 C -0.105 4.105 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.337 0.663 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.012 0.988 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -16.608 9.399 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.188 4.188 3 H 0.106 0.894 4 C -0.006 4.006 5 O -0.302 6.302 6 C -0.011 4.011 7 C -0.141 4.141 8 H 0.101 0.899 9 C -0.191 4.191 10 C -0.012 4.012 11 H 0.093 0.907 12 N -0.308 5.308 13 C -0.074 4.074 14 C -0.143 4.143 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.155 0.845 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.525 -16.546 9.186 18.932 hybrid contribution -1.045 0.895 -0.390 1.430 sum -1.570 -15.651 8.796 18.022 Atomic orbital electron populations 1.21733 0.94485 1.01695 1.02429 1.22595 0.96687 1.02406 0.97161 0.89444 1.22570 0.81020 0.99213 0.97831 1.87924 1.20277 1.76561 1.45456 1.22697 0.98997 0.94274 0.85167 1.21859 0.95391 1.01472 0.95353 0.89862 1.21600 0.99481 0.99542 0.98497 1.21632 0.94700 0.97123 0.87780 0.90672 1.60671 1.19524 1.14032 1.36573 1.22204 1.00377 0.86201 0.98651 1.21597 0.99829 0.98223 0.94632 1.19053 0.96517 0.89014 0.96917 1.21221 1.39062 0.95161 1.00277 0.92772 1.25029 0.95290 0.97575 0.96588 1.69962 1.42050 1.09277 1.32340 0.86663 0.78761 0.78448 0.84158 1.20289 1.21311 1.20231 0.92679 0.92367 0.92101 0.89215 0.93479 0.93430 0.88904 0.90798 0.93349 0.93258 0.84455 0.95426 0.91333 0.92726 0.93822 0.96916 0.96679 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.94 37.16 0.33 -1.17 16 2 C -0.17 -1.97 1.98 -90.48 -0.18 -2.15 16 3 H 0.09 1.24 6.29 -51.93 -0.33 0.91 16 4 C 0.07 0.77 6.13 37.21 0.23 1.00 16 5 O -0.38 -4.91 10.77 -35.23 -0.38 -5.29 16 6 C 0.07 0.72 6.13 37.20 0.23 0.95 16 7 C -0.12 -1.49 2.27 -90.48 -0.21 -1.69 16 8 H 0.08 1.21 6.28 -51.93 -0.33 0.88 16 9 C -0.13 -1.53 9.01 37.16 0.33 -1.20 16 10 C 0.10 1.19 1.94 -67.53 -0.13 1.06 16 11 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 12 N -0.68 -9.54 5.75 -106.53 -0.61 -10.16 16 13 C 0.05 0.93 4.79 -3.83 -0.02 0.91 16 14 C -0.10 -2.19 5.46 -26.73 -0.15 -2.34 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 20 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.68 6.98 -51.93 -0.36 0.32 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.99 7.86 -51.93 -0.41 0.59 16 32 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.34 4.46 7.56 -39.29 -0.30 4.16 16 35 H 0.03 0.48 6.49 -51.93 -0.34 0.15 16 36 H 0.07 1.24 6.14 -51.93 -0.32 0.92 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -30.32 316.35 -8.03 -38.35 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.41 Total: -0.03 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -0.11 Total: -17.92 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.12 Total: -36.83 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.38 Total: -5.29 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.32 -8.03 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924943456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.096 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds