Wall clock time and date at job start Mon Mar 30 2020 05:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 S 1.76204 * 119.97176 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.40193 * 23.51529 * 8 7 6 10 10 O 1.42097 * 106.40122 * 156.43705 * 8 7 6 11 11 C 1.76206 * 107.21440 * 269.97962 * 8 7 6 12 12 H 1.07996 * 120.00181 * 359.97438 * 11 8 7 13 13 C 1.37879 * 119.99454 * 179.97438 * 11 8 7 14 14 N 1.31510 * 120.00295 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99851 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.47020 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46925 * 120.00091 * 15 13 11 18 18 H 1.48492 * 109.47554 * 240.00524 * 15 13 11 19 19 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 20 20 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 21 21 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 23 23 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 24 24 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 25 25 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 26 26 H 0.97002 * 120.00228 * 180.02562 * 14 13 11 27 27 H 1.08006 * 120.02917 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 16 5.8154 2.6120 0.0002 9 8 6.1488 3.8817 0.5442 10 8 6.2832 1.3858 0.5450 11 6 6.3362 2.6396 -1.6829 12 1 5.6038 2.5995 -2.4756 13 6 7.6789 2.7124 -1.9878 14 7 8.5708 2.7607 -1.0226 15 14 8.2312 2.7410 -3.7721 16 1 7.0422 2.6761 -4.6594 17 1 8.9794 3.9958 -4.0386 18 1 9.1110 1.5743 -4.0368 19 6 3.4311 1.2849 -0.0001 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2128 2.3203 -0.0106 24 1 1.3339 4.5114 0.0011 25 1 3.7922 4.6381 0.0002 26 1 9.5154 2.8123 -1.2371 27 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035676552.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:44 Heat of formation + Delta-G solvation = -127.103351 kcal Electronic energy + Delta-G solvation = -15122.637650 eV Core-core repulsion = 12357.554135 eV Total energy + Delta-G solvation = -2765.083515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10659 -38.40561 -37.40203 -36.14060 -35.19838 -32.32769 -31.24347 -28.29728 -28.14519 -24.08232 -23.42937 -20.82892 -19.76204 -18.64741 -17.44207 -17.35076 -17.12091 -16.69454 -16.47346 -15.85701 -15.82201 -14.82166 -14.57479 -14.06337 -13.78560 -13.52129 -13.23460 -13.01048 -12.89524 -12.49524 -12.39816 -12.26289 -12.14829 -12.12840 -11.43920 -11.26137 -10.88922 -10.34059 -9.34986 -8.77603 -7.51943 -0.22604 0.14900 0.31022 1.35272 1.35681 1.54522 2.21167 2.29550 2.48671 2.56989 3.38892 3.71289 3.77073 3.92489 4.10661 4.18675 4.26617 4.42310 4.45063 4.69736 4.74970 4.85901 5.08655 5.22142 5.24661 5.26575 5.58393 5.85871 6.37079 6.74329 8.20639 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.033445 B = 0.007464 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.991073 B = 3750.366330 C = 3934.551953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.336 6.336 3 C 0.102 3.898 4 C -0.154 4.154 5 C -0.091 4.091 6 C -0.085 4.085 7 C -0.617 4.617 8 S 2.595 3.405 9 O -1.018 7.018 10 O -1.025 7.025 11 C -1.021 5.021 12 H 0.121 0.879 13 C 0.069 3.931 14 N -0.890 5.890 15 Si 0.996 3.004 16 H -0.247 1.247 17 H -0.255 1.255 18 H -0.257 1.257 19 C -0.090 4.090 20 H 0.072 0.928 21 H 0.121 0.879 22 H 0.071 0.929 23 H 0.179 0.821 24 H 0.178 0.822 25 H 0.141 0.859 26 H 0.301 0.699 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.792 -0.810 -2.422 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.250 6.250 3 C 0.056 3.944 4 C -0.173 4.173 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.704 4.704 8 S 2.783 3.217 9 O -1.015 7.015 10 O -1.022 7.022 11 C -1.155 5.155 12 H 0.139 0.861 13 C -0.144 4.144 14 N -0.521 5.521 15 Si 0.813 3.187 16 H -0.170 1.170 17 H -0.179 1.179 18 H -0.181 1.181 19 C -0.109 4.109 20 H 0.090 0.910 21 H 0.139 0.861 22 H 0.090 0.910 23 H 0.196 0.804 24 H 0.195 0.805 25 H 0.159 0.841 26 H 0.111 0.889 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.065 -0.978 -1.553 16.169 hybrid contribution 0.097 -0.059 -0.930 0.936 sum -15.968 -1.036 -2.482 16.193 Atomic orbital electron populations 1.23476 0.75747 1.06040 1.02833 1.86088 1.24141 1.26015 1.88761 1.19072 0.91422 0.85991 0.97953 1.21906 1.02012 0.91063 1.02279 1.21539 0.93068 0.99288 0.97026 1.21166 0.95752 0.96765 0.96744 1.30655 1.26396 0.99467 1.13932 1.00659 0.71636 0.72113 0.77270 1.93279 1.82742 1.44050 1.81472 1.93277 1.79688 1.47711 1.81565 1.30484 1.01479 1.67123 1.16376 0.86138 1.26097 0.94785 0.87463 1.06043 1.69996 1.04733 1.40740 1.36619 0.85026 0.79397 0.79652 0.74607 1.17041 1.17860 1.18149 1.20186 0.93559 0.96695 1.00467 0.90955 0.86124 0.90996 0.80352 0.80470 0.84139 0.88860 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.31 15 2 O -0.34 -9.45 10.50 -92.48 -0.97 -10.43 15 3 C 0.10 3.30 6.69 22.50 0.15 3.45 15 4 C -0.15 -3.82 9.04 22.37 0.20 -3.62 15 5 C -0.09 -2.41 10.04 22.26 0.22 -2.19 15 6 C -0.09 -3.17 9.52 22.28 0.21 -2.96 15 7 C -0.62 -27.76 5.81 22.25 0.13 -27.63 15 8 S 2.59 146.93 4.65 -56.49 -0.26 146.66 15 9 O -1.02 -61.98 17.16 -128.00 -2.20 -64.18 15 10 O -1.03 -64.04 17.16 -128.00 -2.20 -66.23 15 11 C -1.02 -57.98 9.58 67.73 0.65 -57.33 15 12 H 0.12 6.22 7.81 -2.91 -0.02 6.19 15 13 C 0.07 3.89 5.46 84.66 0.46 4.35 15 14 N -0.89 -53.60 13.19 21.45 0.28 -53.32 15 15 Si 1.00 41.55 29.54 68.60 2.03 43.58 15 16 H -0.25 -9.65 7.11 99.48 0.71 -8.95 15 17 H -0.25 -9.90 7.11 99.48 0.71 -9.19 15 18 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 19 C -0.09 -3.73 9.46 22.36 0.21 -3.52 15 20 H 0.07 0.85 7.65 -2.39 -0.02 0.83 15 21 H 0.12 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.07 0.84 7.67 -2.39 -0.02 0.82 15 23 H 0.18 2.59 6.30 -2.91 -0.02 2.57 15 24 H 0.18 2.98 8.06 -2.91 -0.02 2.96 15 25 H 0.14 5.14 7.61 -2.91 -0.02 5.12 15 26 H 0.30 16.10 8.31 -92.71 -0.77 15.33 15 27 H 0.13 5.64 7.62 -2.91 -0.02 5.62 15 Total: -1.00 -80.12 258.10 1.22 -78.89 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.19 Total: 13.17 kcal Atomic # 6 Polarization: -91.50 SS G_CDS: 3.35 Total: -88.14 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.28 Total: -53.32 kcal Atomic # 8 Polarization: -135.48 SS G_CDS: -5.36 Total: -140.84 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 146.93 SS G_CDS: -0.26 Total: 146.66 kcal Total: -80.12 1.22 -78.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035676552.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.209 kcal (2) G-P(sol) polarization free energy of solvation -80.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds