Wall clock time and date at job start Mon Mar 30 2020 05:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 S 1.76195 * 120.02567 * 180.02562 * 8 7 6 10 10 O 1.42100 * 106.40429 * 228.54304 * 9 8 7 11 11 O 1.42097 * 106.40407 * 1.46580 * 9 8 7 12 12 C 1.76205 * 107.21575 * 115.00580 * 9 8 7 13 13 H 1.07997 * 120.00033 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99925 * 179.97438 * 12 9 8 15 15 N 1.31512 * 119.99850 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99907 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46891 * 89.99851 * 16 14 12 18 18 H 1.48498 * 109.46980 * 209.99898 * 16 14 12 19 19 H 1.48500 * 109.46938 * 330.00003 * 16 14 12 20 20 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 22 22 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 23 23 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 24 24 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 25 25 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 26 26 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 27 27 H 0.97006 * 119.99572 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 16 4.3930 -0.1914 -0.0002 10 8 3.8555 -1.0209 -1.0210 11 8 5.7538 0.2164 0.0338 12 6 4.0823 -1.0157 1.5258 13 1 3.4011 -0.5838 2.2440 14 6 4.7080 -2.2128 1.8026 15 7 5.5363 -2.7395 0.9274 16 14 4.3792 -3.0864 3.4207 17 1 3.2279 -4.0105 3.2592 18 1 5.5826 -3.8597 3.8191 19 1 4.0654 -2.0834 4.4698 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.2128 2.3203 -0.0010 24 1 1.3339 4.5114 0.0026 25 1 3.7920 4.6381 -0.0024 26 1 5.1344 2.5754 -0.0023 27 1 5.9762 -3.5819 1.1219 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041030935.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:48 Heat of formation + Delta-G solvation = -96.202255 kcal Electronic energy + Delta-G solvation = -15600.813855 eV Core-core repulsion = 12837.070311 eV Total energy + Delta-G solvation = -2763.743543 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75838 -37.07131 -35.00628 -33.81439 -33.00061 -30.94332 -29.80880 -27.03138 -26.04272 -22.73741 -21.83308 -18.74408 -18.09470 -16.89359 -16.02993 -15.82938 -15.42720 -14.99878 -14.30119 -13.93089 -13.84557 -13.66583 -13.19265 -12.50049 -12.03246 -11.87672 -11.44435 -11.17555 -11.15448 -10.97819 -10.86003 -10.54358 -10.13827 -10.03307 -9.45796 -9.16619 -8.97194 -8.62681 -8.00388 -6.62393 -5.21188 1.31888 1.71175 2.28705 3.12373 3.18241 3.25472 3.57096 3.88925 4.14833 4.72498 4.97516 5.04016 5.25577 5.35141 5.38201 5.54119 5.55642 5.70891 5.93774 5.98270 6.08179 6.33086 6.47843 6.65612 7.01182 7.12576 7.39442 7.62004 8.05406 8.96098 10.32783 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.010265 C = 0.008943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.085663 B = 2727.151323 C = 3130.231558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.287 6.287 3 C 0.218 3.782 4 C -0.238 4.238 5 C -0.048 4.048 6 C -0.188 4.188 7 C 0.005 3.995 8 C -0.678 4.678 9 S 2.612 3.388 10 O -0.975 6.975 11 O -0.990 6.990 12 C -0.989 4.989 13 H 0.102 0.898 14 C 0.132 3.868 15 N -0.846 5.846 16 Si 0.922 3.078 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.263 1.263 20 H 0.104 0.896 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.129 0.871 24 H 0.123 0.877 25 H 0.126 0.874 26 H 0.147 0.853 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 8.466 0.630 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.198 6.198 3 C 0.170 3.830 4 C -0.258 4.258 5 C -0.066 4.066 6 C -0.207 4.207 7 C -0.014 4.014 8 C -0.759 4.759 9 S 2.792 3.208 10 O -0.972 6.972 11 O -0.987 6.987 12 C -1.123 5.123 13 H 0.120 0.880 14 C -0.085 4.085 15 N -0.476 5.476 16 Si 0.746 3.254 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.187 1.187 20 H 0.122 0.878 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.147 0.853 24 H 0.141 0.859 25 H 0.144 0.856 26 H 0.164 0.836 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.292 7.944 -0.134 11.484 hybrid contribution -1.050 0.124 1.380 1.739 sum -9.342 8.067 1.246 12.406 Atomic orbital electron populations 1.23115 0.78632 1.04362 1.00835 1.86390 1.21162 1.25618 1.86655 1.18453 0.90925 0.84712 0.88894 1.21253 0.99869 0.92610 1.12019 1.21040 0.94786 0.96705 0.94075 1.21113 0.94009 0.98430 1.07097 1.20923 1.00756 0.90188 0.89499 1.30915 1.04436 1.21627 1.18923 1.00834 0.72121 0.71157 0.76697 1.93347 1.79788 1.64371 1.59743 1.93317 1.33257 1.83024 1.89110 1.30049 1.39055 1.18231 1.24967 0.88019 1.24742 0.90672 0.94908 0.98167 1.69907 1.23559 1.19181 1.34915 0.86146 0.78666 0.79318 0.81293 1.19188 1.19970 1.18689 0.87800 0.92724 0.92753 0.85287 0.85856 0.85628 0.83564 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 15 2 O -0.29 -5.95 9.29 -29.13 -0.27 -6.22 15 3 C 0.22 4.46 6.63 -39.22 -0.26 4.20 15 4 C -0.24 -3.80 9.04 -39.43 -0.36 -4.15 15 5 C -0.05 -0.68 10.04 -39.60 -0.40 -1.08 15 6 C -0.19 -2.91 10.04 -39.56 -0.40 -3.31 15 7 C 0.00 0.09 9.55 -39.61 -0.38 -0.28 15 8 C -0.68 -15.40 5.76 -39.43 -0.23 -15.63 15 9 S 2.61 72.99 4.24 -107.50 -0.46 72.54 15 10 O -0.98 -29.70 17.18 -62.49 -1.07 -30.78 15 11 O -0.99 -29.32 16.85 -57.17 -0.96 -30.28 15 12 C -0.99 -28.16 9.58 30.60 0.29 -27.87 15 13 H 0.10 2.69 7.81 -52.49 -0.41 2.28 15 14 C 0.13 3.76 5.46 -17.82 -0.10 3.66 15 15 N -0.85 -25.19 13.19 55.43 0.73 -24.46 15 16 Si 0.92 20.89 29.54 -169.99 -5.02 15.87 15 17 H -0.27 -5.82 7.11 56.52 0.40 -5.41 15 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 19 H -0.26 -5.75 7.11 56.52 0.40 -5.35 15 20 H 0.10 1.25 8.14 -51.93 -0.42 0.83 15 21 H 0.05 0.63 7.66 -51.93 -0.40 0.23 15 22 H 0.05 0.63 7.66 -51.93 -0.40 0.23 15 23 H 0.13 1.60 6.30 -52.49 -0.33 1.27 15 24 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 25 H 0.13 1.50 8.06 -52.49 -0.42 1.08 15 26 H 0.15 2.72 7.33 -52.49 -0.38 2.33 15 27 H 0.29 7.73 8.31 -40.82 -0.34 7.39 15 LS Contribution 256.86 15.07 3.87 3.87 Total: -1.00 -36.06 256.86 -6.34 -42.39 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -2.32 Total: 0.18 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: -0.83 Total: -43.12 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 0.73 Total: -24.46 kcal Atomic # 8 Polarization: -64.97 SS G_CDS: -2.31 Total: -67.28 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 72.99 SS G_CDS: -0.46 Total: 72.54 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -36.06 -6.34 -42.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041030935.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.808 kcal (2) G-P(sol) polarization free energy of solvation -36.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds