Wall clock time and date at job start Mon Mar 30 2020 05:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 S 1.76195 * 120.02567 * 180.02562 * 8 7 6 10 10 O 1.42100 * 106.40429 * 228.54304 * 9 8 7 11 11 O 1.42097 * 106.40407 * 1.46580 * 9 8 7 12 12 C 1.76205 * 107.21575 * 115.00580 * 9 8 7 13 13 H 1.07997 * 120.00033 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99925 * 179.97438 * 12 9 8 15 15 N 1.31512 * 119.99850 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99907 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46891 * 89.99851 * 16 14 12 18 18 H 1.48498 * 109.46980 * 209.99898 * 16 14 12 19 19 H 1.48500 * 109.46938 * 330.00003 * 16 14 12 20 20 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 22 22 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 23 23 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 24 24 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 25 25 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 26 26 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 27 27 H 0.97006 * 119.99572 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 16 4.3930 -0.1914 -0.0002 10 8 3.8555 -1.0209 -1.0210 11 8 5.7538 0.2164 0.0338 12 6 4.0823 -1.0157 1.5258 13 1 3.4011 -0.5838 2.2440 14 6 4.7080 -2.2128 1.8026 15 7 5.5363 -2.7395 0.9274 16 14 4.3792 -3.0864 3.4207 17 1 3.2279 -4.0105 3.2592 18 1 5.5826 -3.8597 3.8191 19 1 4.0654 -2.0834 4.4698 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.2128 2.3203 -0.0010 24 1 1.3339 4.5114 0.0026 25 1 3.7920 4.6381 -0.0024 26 1 5.1344 2.5754 -0.0023 27 1 5.9762 -3.5819 1.1219 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041030935.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:47 Heat of formation + Delta-G solvation = -124.807401 kcal Electronic energy + Delta-G solvation = -15602.054267 eV Core-core repulsion = 12837.070311 eV Total energy + Delta-G solvation = -2764.983955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10928 -38.42397 -37.21195 -36.04634 -35.15786 -32.30692 -31.11809 -28.26942 -28.13580 -24.16377 -23.14682 -20.74636 -19.68348 -18.73425 -17.88788 -17.23578 -16.90630 -16.70533 -15.84092 -15.71126 -15.58983 -15.31630 -14.61337 -14.00874 -13.72505 -13.36003 -13.13316 -12.98582 -12.67286 -12.40979 -12.34900 -12.30996 -12.27679 -12.04335 -11.26089 -11.22462 -10.82708 -10.29702 -9.34894 -8.73478 -7.44557 -0.08464 0.27469 0.38825 1.33322 1.35694 1.51478 2.22270 2.32817 2.57162 2.61165 3.48519 3.65552 3.85878 3.93566 4.20532 4.27065 4.37153 4.40737 4.60961 4.71719 4.76837 4.83904 5.20169 5.26086 5.27684 5.38532 5.79691 5.89563 6.34630 6.78040 8.24735 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.010265 C = 0.008943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.085663 B = 2727.151323 C = 3130.231558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.333 6.333 3 C 0.197 3.803 4 C -0.230 4.230 5 C -0.027 4.027 6 C -0.176 4.176 7 C -0.020 4.020 8 C -0.710 4.710 9 S 2.600 3.400 10 O -1.022 7.022 11 O -1.030 7.030 12 C -1.010 5.010 13 H 0.113 0.887 14 C 0.068 3.932 15 N -0.895 5.895 16 Si 0.994 3.006 17 H -0.252 1.252 18 H -0.259 1.259 19 H -0.249 1.249 20 H 0.112 0.888 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.171 0.829 24 H 0.182 0.818 25 H 0.168 0.832 26 H 0.137 0.863 27 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 10.786 2.134 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.246 6.246 3 C 0.149 3.851 4 C -0.248 4.248 5 C -0.044 4.044 6 C -0.195 4.195 7 C -0.039 4.039 8 C -0.799 4.799 9 S 2.789 3.211 10 O -1.019 7.019 11 O -1.027 7.027 12 C -1.143 5.143 13 H 0.131 0.869 14 C -0.144 4.144 15 N -0.526 5.526 16 Si 0.811 3.189 17 H -0.176 1.176 18 H -0.183 1.183 19 H -0.172 1.172 20 H 0.130 0.870 21 H 0.100 0.900 22 H 0.097 0.903 23 H 0.189 0.811 24 H 0.199 0.801 25 H 0.186 0.814 26 H 0.155 0.845 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.994 10.214 1.350 15.067 hybrid contribution -0.326 -0.418 0.853 1.004 sum -11.320 9.797 2.203 15.132 Atomic orbital electron populations 1.23539 0.75536 1.05949 1.03282 1.86323 1.24633 1.26727 1.86870 1.18737 0.90370 0.86310 0.89732 1.21749 1.01751 0.91379 1.09969 1.21756 0.94510 0.98122 0.90048 1.21590 0.94857 0.98348 1.04700 1.21075 1.00962 0.90791 0.91049 1.30028 1.05489 1.19702 1.24666 1.00316 0.72024 0.72411 0.76333 1.93270 1.80346 1.67250 1.61066 1.93246 1.36097 1.83979 1.89387 1.30366 1.39450 1.19122 1.25393 0.86896 1.26087 0.89943 0.95697 1.02704 1.70009 1.24902 1.20189 1.37515 0.85092 0.79564 0.78428 0.75781 1.17572 1.18257 1.17184 0.86973 0.90008 0.90342 0.81136 0.80102 0.81437 0.84506 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 15 2 O -0.33 -13.84 9.29 -83.10 -0.77 -14.61 15 3 C 0.20 7.87 6.63 22.51 0.15 8.02 15 4 C -0.23 -6.33 9.04 22.37 0.20 -6.13 15 5 C -0.03 -0.61 10.04 22.26 0.22 -0.39 15 6 C -0.18 -4.78 10.04 22.28 0.22 -4.56 15 7 C -0.02 -0.77 9.55 22.25 0.21 -0.56 15 8 C -0.71 -33.11 5.76 22.37 0.13 -32.98 15 9 S 2.60 154.39 4.24 -56.49 -0.24 154.15 15 10 O -1.02 -66.67 17.18 -122.92 -2.11 -68.79 15 11 O -1.03 -65.45 16.85 -128.00 -2.16 -67.61 15 12 C -1.01 -59.81 9.58 67.73 0.65 -59.16 15 13 H 0.11 6.15 7.81 -2.91 -0.02 6.13 15 14 C 0.07 3.94 5.46 84.66 0.46 4.41 15 15 N -0.89 -55.71 13.19 21.45 0.28 -55.43 15 16 Si 0.99 42.90 29.54 68.60 2.03 44.93 15 17 H -0.25 -10.16 7.11 99.48 0.71 -9.45 15 18 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 19 H -0.25 -10.04 7.11 99.48 0.71 -9.33 15 20 H 0.11 2.57 8.14 -2.39 -0.02 2.55 15 21 H 0.08 1.60 7.66 -2.39 -0.02 1.58 15 22 H 0.08 1.57 7.66 -2.39 -0.02 1.56 15 23 H 0.17 3.19 6.30 -2.91 -0.02 3.17 15 24 H 0.18 2.15 8.06 -2.91 -0.02 2.12 15 25 H 0.17 3.10 8.06 -2.91 -0.02 3.08 15 26 H 0.14 5.34 7.33 -2.91 -0.02 5.32 15 27 H 0.30 16.59 8.31 -92.70 -0.77 15.82 15 Total: -1.00 -86.02 256.86 1.58 -84.44 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.18 Total: 12.88 kcal Atomic # 6 Polarization: -93.33 SS G_CDS: 3.36 Total: -89.96 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.28 Total: -55.43 kcal Atomic # 8 Polarization: -145.97 SS G_CDS: -5.04 Total: -151.01 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 154.39 SS G_CDS: -0.24 Total: 154.15 kcal Total: -86.02 1.58 -84.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041030935.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.369 kcal (2) G-P(sol) polarization free energy of solvation -86.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds