Wall clock time and date at job start Mon Mar 30 2020 05:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00040 * 2 1 4 4 H 1.48507 * 109.47250 * 270.00316 * 3 2 1 5 5 H 1.48498 * 109.47164 * 30.00475 * 3 2 1 6 6 H 1.48506 * 109.47253 * 150.00310 * 3 2 1 7 7 C 1.38699 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00636 * 179.97438 * 7 2 1 9 9 O 1.34817 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.35506 * 117.00318 * 185.07566 * 9 7 2 11 11 C 1.38764 * 120.15490 * 354.40010 * 10 9 7 12 12 C 1.38178 * 120.06163 * 180.27683 * 11 10 9 13 13 Cl 1.73605 * 119.80903 * 180.02562 * 12 11 10 14 14 C 1.38738 * 120.39021 * 0.02562 * 12 11 10 15 15 C 1.37749 * 120.31560 * 359.97438 * 14 12 11 16 16 C 1.39765 * 119.92384 * 359.97438 * 15 14 12 17 17 C 1.47338 * 120.18775 * 179.97438 * 16 15 14 18 18 O 1.21524 * 119.99815 * 180.02562 * 17 16 15 19 19 O 1.34770 * 119.99932 * 0.02906 * 17 16 15 20 20 H 0.96997 * 119.99816 * 359.97438 * 1 2 3 21 21 H 1.07995 * 119.97278 * 0.28475 * 11 10 9 22 22 H 1.07997 * 119.84452 * 179.97438 * 14 12 11 23 23 H 1.07994 * 120.03952 * 179.97438 * 15 14 12 24 24 H 0.96698 * 116.99956 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0087 -1.2011 -0.0005 8 1 3.0888 -1.2012 -0.0010 9 8 1.3347 -2.3687 -0.0016 10 6 2.0686 -3.5029 0.1048 11 6 3.4547 -3.4400 0.0916 12 6 4.2012 -4.5983 0.1944 13 17 5.9350 -4.5119 0.1780 14 6 3.5732 -5.8299 0.3107 15 6 2.1982 -5.9107 0.3255 16 6 1.4303 -4.7474 0.2234 17 6 -0.0409 -4.8271 0.2379 18 8 -0.7052 -3.8134 0.1485 19 8 -0.6498 -6.0241 0.3505 20 1 -0.4850 0.8400 0.0004 21 1 3.9507 -2.4850 0.0011 22 1 4.1652 -6.7297 0.3901 23 1 1.7140 -6.8718 0.4158 24 1 -1.6167 -6.0260 0.3558 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042220580.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:22 Heat of formation + Delta-G solvation = -122.352998 kcal Electronic energy + Delta-G solvation = -14801.087077 eV Core-core repulsion = 11898.332752 eV Total energy + Delta-G solvation = -2902.754325 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.018 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.50215 -40.22231 -38.56285 -37.24035 -36.81537 -34.42670 -32.15791 -30.88044 -27.55602 -25.44134 -23.63830 -22.15667 -20.10362 -19.28788 -18.75857 -17.65211 -16.72619 -16.60710 -16.36669 -15.82687 -15.56916 -15.41741 -14.68501 -14.16507 -13.96493 -13.69549 -13.18137 -12.83372 -12.78408 -12.45018 -12.15057 -12.09100 -11.91172 -11.72871 -11.24965 -10.88958 -9.89586 -9.27998 -8.53737 -6.25538 -0.29985 0.49944 1.04436 1.33664 1.43456 1.52211 1.63768 2.11136 2.24794 2.67789 3.02754 3.24154 3.87719 4.15293 4.27529 4.38203 4.70682 4.84808 4.99783 5.20715 5.26163 5.40175 5.74312 5.79086 5.86252 6.84971 7.20142 7.59405 8.65324 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.010422 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.930883 B = 2686.091553 C = 4304.874576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.013 4.013 3 Si 1.021 2.979 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.248 1.248 7 C -0.431 4.431 8 H 0.111 0.889 9 O -0.174 6.174 10 C 0.171 3.829 11 C -0.245 4.245 12 C 0.051 3.949 13 Cl -0.058 7.058 14 C -0.199 4.199 15 C 0.014 3.986 16 C -0.232 4.232 17 C 0.519 3.481 18 O -0.541 6.541 19 O -0.504 6.504 20 H 0.275 0.725 21 H 0.138 0.862 22 H 0.170 0.830 23 H 0.177 0.823 24 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.614 -10.471 0.881 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.214 4.214 3 Si 0.839 3.161 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.506 4.506 8 H 0.128 0.872 9 O -0.075 6.075 10 C 0.114 3.886 11 C -0.265 4.265 12 C 0.024 3.976 13 Cl -0.028 7.028 14 C -0.218 4.218 15 C -0.004 4.004 16 C -0.235 4.235 17 C 0.366 3.634 18 O -0.433 6.433 19 O -0.318 6.318 20 H 0.085 0.915 21 H 0.155 0.845 22 H 0.188 0.812 23 H 0.194 0.806 24 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 7.562 -9.981 0.832 12.550 hybrid contribution -0.514 1.078 -0.072 1.197 sum 7.048 -8.903 0.760 11.380 Atomic orbital electron populations 1.70272 1.08312 1.29150 1.45299 1.26744 0.96734 1.03030 0.94916 0.84576 0.77983 0.74066 0.79511 1.18518 1.19516 1.17129 1.22085 0.92887 0.81306 1.54289 0.87193 1.84171 1.35034 1.12245 1.76069 1.19660 0.90523 0.87441 0.90949 1.20931 0.92139 0.99561 1.13850 1.21033 0.84544 0.94548 0.97524 1.98346 1.09267 1.98785 1.96448 1.20988 0.94255 0.96477 1.10108 1.21364 0.92699 0.96747 0.89621 1.18510 0.89590 0.92847 1.22549 1.20821 0.89293 0.80755 0.72577 1.91061 1.67205 1.37796 1.47208 1.84459 1.29363 1.32155 1.85810 0.91532 0.84470 0.81212 0.80559 0.71386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.50 13.67 21.62 0.30 -55.20 14 2 C -0.01 -0.74 5.49 84.85 0.47 -0.27 14 3 Si 1.02 41.99 29.55 68.60 2.03 44.02 14 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 14 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 14 6 H -0.25 -9.37 7.11 99.48 0.71 -8.66 14 7 C -0.43 -24.67 9.49 67.93 0.64 -24.03 14 8 H 0.11 5.66 5.21 -2.91 -0.02 5.64 14 9 O -0.17 -10.43 7.83 0.97 0.01 -10.42 14 10 C 0.17 8.34 6.66 22.91 0.15 8.50 14 11 C -0.24 -10.19 8.93 22.38 0.20 -9.99 14 12 C 0.05 1.66 6.32 22.38 0.14 1.81 14 13 Cl -0.06 -1.57 28.94 -2.72 -0.08 -1.65 14 14 C -0.20 -5.51 9.80 22.27 0.22 -5.30 14 15 C 0.01 0.41 9.61 22.52 0.22 0.63 14 16 C -0.23 -9.64 5.89 -20.00 -0.12 -9.76 14 17 C 0.52 22.08 8.26 70.22 0.58 22.66 14 18 O -0.54 -29.50 15.95 26.76 0.43 -29.07 14 19 O -0.50 -14.74 12.68 -56.81 -0.72 -15.46 14 20 H 0.28 15.56 8.31 -92.71 -0.77 14.79 14 21 H 0.14 5.82 5.63 -2.91 -0.02 5.80 14 22 H 0.17 3.32 8.06 -2.91 -0.02 3.30 14 23 H 0.18 3.90 7.61 -2.91 -0.02 3.88 14 24 H 0.43 8.58 9.11 -74.06 -0.67 7.90 14 Total: -1.00 -75.45 244.33 5.06 -70.39 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.60 Total: 13.15 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 2.50 Total: -15.76 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.30 Total: -55.20 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -0.29 Total: -54.95 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -75.45 5.06 -70.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042220580.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.961 kcal (2) G-P(sol) polarization free energy of solvation -75.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds