Wall clock time and date at job start Mon Mar 30 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.33555 * 124.38914 * 90.00098 * 3 2 1 5 5 C 1.38123 * 115.10079 * 179.97438 * 4 3 2 6 6 O 1.35573 * 123.51439 * 180.02562 * 5 4 3 7 7 C 1.34776 * 116.99820 * 359.97438 * 6 5 4 8 8 H 1.07997 * 120.00109 * 359.97438 * 7 6 5 9 9 C 1.38700 * 119.99787 * 179.97438 * 7 6 5 10 10 N 1.31523 * 120.00088 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99955 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46963 * 90.00317 * 11 9 7 13 13 H 1.48504 * 109.47243 * 209.99997 * 11 9 7 14 14 H 1.48502 * 109.47175 * 330.00492 * 11 9 7 15 15 C 1.37602 * 112.97066 * 0.02562 * 5 4 3 16 16 C 1.41531 * 125.49090 * 179.97438 * 15 5 4 17 17 O 1.21702 * 120.00186 * 0.02562 * 16 15 5 18 18 O 1.34978 * 119.99819 * 179.97438 * 16 15 5 19 19 S 1.70563 * 124.38906 * 269.69988 * 3 2 1 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 23 23 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 24 24 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 25 25 H 1.08001 * 122.44624 * 0.02562 * 4 3 2 26 26 H 0.97004 * 119.99957 * 179.97438 * 10 9 7 27 27 H 0.96705 * 114.00183 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2838 2.1320 1.1021 5 6 2.7386 3.4170 0.8792 6 8 3.0462 4.2853 1.8739 7 6 2.8906 3.8467 3.1388 8 1 2.5348 2.8438 3.3226 9 6 3.1876 4.6835 4.2043 10 7 3.6215 5.9047 3.9804 11 14 2.9714 4.0759 5.9574 12 1 4.2335 3.4463 6.4223 13 1 2.6352 5.2216 6.8405 14 1 1.8737 3.0768 6.0032 15 6 2.8470 3.7239 -0.4578 16 6 3.2849 4.9628 -0.9836 17 8 3.6042 5.8645 -0.2311 18 8 3.3493 5.1440 -2.3196 19 16 2.3604 2.3266 -1.4075 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 2.1426 1.7313 2.0951 26 1 3.8288 6.4901 4.7256 27 1 3.6597 6.0211 -2.5831 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069976841.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:24 Heat of formation + Delta-G solvation = -98.947476 kcal Electronic energy + Delta-G solvation = -15014.242661 eV Core-core repulsion = 12250.380076 eV Total energy + Delta-G solvation = -2763.862585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45488 -38.47509 -36.01660 -34.95666 -33.13504 -32.11188 -28.67977 -25.54141 -24.79275 -21.99939 -21.47856 -19.03919 -18.12683 -17.25212 -16.65892 -15.44512 -15.03416 -14.85995 -14.45896 -14.11006 -13.78956 -13.67756 -12.93183 -12.71149 -12.23236 -12.14213 -11.75220 -11.32911 -11.24694 -11.03690 -10.83098 -10.61313 -10.56523 -10.30225 -9.79312 -9.42212 -8.99235 -8.01026 -7.21999 -6.65315 -4.20089 1.22678 2.32094 2.70163 2.96559 3.03171 3.08461 3.19404 3.81978 4.03858 4.24475 4.87446 4.88624 5.16674 5.32431 5.39271 5.70287 5.87387 5.97934 6.03724 6.24220 6.33447 6.54212 6.78082 6.97165 7.16258 7.31581 7.72959 8.72513 8.94933 9.41973 10.48144 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.019995 B = 0.009474 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.047233 B = 2954.637182 C = 4263.305144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.161 4.161 4 C -0.198 4.198 5 C 0.203 3.797 6 O -0.104 6.104 7 C -0.396 4.396 8 H 0.096 0.904 9 C 0.043 3.957 10 N -0.826 5.826 11 Si 0.948 3.052 12 H -0.269 1.269 13 H -0.274 1.274 14 H -0.264 1.264 15 C -0.398 4.398 16 C 0.544 3.456 17 O -0.515 6.515 18 O -0.527 6.527 19 S 0.154 5.846 20 H 0.058 0.942 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.146 0.854 26 H 0.277 0.723 27 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 -9.561 -5.977 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.279 4.279 4 C -0.232 4.232 5 C 0.135 3.865 6 O -0.002 6.002 7 C -0.472 4.472 8 H 0.114 0.886 9 C -0.166 4.166 10 N -0.457 5.457 11 Si 0.771 3.229 12 H -0.195 1.195 13 H -0.199 1.199 14 H -0.189 1.189 15 C -0.515 4.515 16 C 0.393 3.607 17 O -0.407 6.407 18 O -0.338 6.338 19 S 0.415 5.585 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.163 0.837 26 H 0.087 0.913 27 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.921 -9.501 -7.023 12.448 hybrid contribution 0.210 0.566 2.313 2.391 sum -3.711 -8.935 -4.710 10.760 Atomic orbital electron populations 1.21781 0.94373 1.01556 1.02779 1.20140 0.96182 0.90026 1.03012 1.23820 1.04485 1.00928 0.98716 1.19970 1.08468 0.94693 1.00097 1.18474 0.91376 0.88636 0.88042 1.84103 1.67584 1.34978 1.13488 1.21622 1.46207 1.00518 0.78883 0.88648 1.25490 0.95814 0.95054 1.00258 1.70107 1.36528 1.05827 1.33227 0.85611 0.79233 0.78664 0.79362 1.19474 1.19868 1.18851 1.20464 1.37447 0.99854 0.93736 1.17876 0.76093 0.87148 0.79579 1.91027 1.47887 1.43047 1.58764 1.85025 1.82265 1.40438 1.26068 1.82425 1.66977 1.02801 1.06318 0.92332 0.92125 0.92335 0.90216 0.90851 0.83688 0.91309 0.74952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.90 37.16 0.37 -1.30 15 2 C -0.05 -0.69 6.36 -27.88 -0.18 -0.87 15 3 C -0.16 -2.77 5.51 -35.95 -0.20 -2.97 15 4 C -0.20 -4.08 9.09 -41.26 -0.38 -4.46 15 5 C 0.20 5.09 6.67 -39.86 -0.27 4.82 15 6 O -0.10 -3.07 8.63 -16.68 -0.14 -3.21 15 7 C -0.40 -10.86 9.56 30.90 0.30 -10.57 15 8 H 0.10 2.33 5.57 -52.49 -0.29 2.04 15 9 C 0.04 1.16 5.49 -17.51 -0.10 1.07 15 10 N -0.83 -24.24 13.67 55.48 0.76 -23.48 15 11 Si 0.95 19.65 29.55 -169.99 -5.02 14.63 15 12 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 13 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 14 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 15 C -0.40 -9.32 6.29 -38.56 -0.24 -9.56 15 16 C 0.54 12.95 8.08 31.99 0.26 13.21 15 17 O -0.51 -14.45 16.59 -25.51 -0.42 -14.88 15 18 O -0.53 -9.80 13.31 -41.26 -0.55 -10.35 15 19 S 0.15 2.76 22.76 -107.50 -2.45 0.31 15 20 H 0.06 0.53 8.14 -51.93 -0.42 0.10 15 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 15 23 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.15 2.83 6.18 -52.49 -0.32 2.51 15 26 H 0.28 7.33 8.31 -40.82 -0.34 7.00 15 27 H 0.40 5.46 8.98 45.56 0.41 5.87 15 LS Contribution 262.52 15.07 3.96 3.96 Total: -1.00 -33.89 262.52 -5.76 -39.65 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -1.46 Total: 4.00 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.43 Total: -10.62 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.76 Total: -23.48 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -1.12 Total: -28.44 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.45 Total: 0.31 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.89 -5.76 -39.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069976841.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.301 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds