Wall clock time and date at job start Mon Mar 30 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.33555 * 124.38914 * 90.00098 * 3 2 1 5 5 C 1.38123 * 115.10079 * 179.97438 * 4 3 2 6 6 O 1.35573 * 123.51439 * 180.02562 * 5 4 3 7 7 C 1.34776 * 116.99820 * 359.97438 * 6 5 4 8 8 H 1.07997 * 120.00109 * 359.97438 * 7 6 5 9 9 C 1.38700 * 119.99787 * 179.97438 * 7 6 5 10 10 N 1.31523 * 120.00088 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99955 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46963 * 90.00317 * 11 9 7 13 13 H 1.48504 * 109.47243 * 209.99997 * 11 9 7 14 14 H 1.48502 * 109.47175 * 330.00492 * 11 9 7 15 15 C 1.37602 * 112.97066 * 0.02562 * 5 4 3 16 16 C 1.41531 * 125.49090 * 179.97438 * 15 5 4 17 17 O 1.21702 * 120.00186 * 0.02562 * 16 15 5 18 18 O 1.34978 * 119.99819 * 179.97438 * 16 15 5 19 19 S 1.70563 * 124.38906 * 269.69988 * 3 2 1 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 23 23 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 24 24 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 25 25 H 1.08001 * 122.44624 * 0.02562 * 4 3 2 26 26 H 0.97004 * 119.99957 * 179.97438 * 10 9 7 27 27 H 0.96705 * 114.00183 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2838 2.1320 1.1021 5 6 2.7386 3.4170 0.8792 6 8 3.0462 4.2853 1.8739 7 6 2.8906 3.8467 3.1388 8 1 2.5348 2.8438 3.3226 9 6 3.1876 4.6835 4.2043 10 7 3.6215 5.9047 3.9804 11 14 2.9714 4.0759 5.9574 12 1 4.2335 3.4463 6.4223 13 1 2.6352 5.2216 6.8405 14 1 1.8737 3.0768 6.0032 15 6 2.8470 3.7239 -0.4578 16 6 3.2849 4.9628 -0.9836 17 8 3.6042 5.8645 -0.2311 18 8 3.3493 5.1440 -2.3196 19 16 2.3604 2.3266 -1.4075 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 2.1426 1.7313 2.0951 26 1 3.8288 6.4901 4.7256 27 1 3.6597 6.0211 -2.5831 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069976841.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:24 Heat of formation + Delta-G solvation = -123.258520 kcal Electronic energy + Delta-G solvation = -15015.296867 eV Core-core repulsion = 12250.380076 eV Total energy + Delta-G solvation = -2764.916791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.29951 -40.30228 -37.61503 -36.77700 -34.74199 -33.79900 -30.28057 -27.50393 -26.19396 -23.64655 -22.91697 -20.82411 -19.82301 -19.06645 -18.50329 -17.06795 -16.76115 -16.72909 -16.10561 -15.66481 -15.42115 -15.01817 -14.48443 -14.18347 -13.86305 -13.75337 -13.35291 -12.89461 -12.49856 -12.41890 -12.32006 -12.23979 -12.11024 -11.75835 -11.52397 -11.35407 -10.87419 -9.65384 -8.91127 -8.58153 -6.26204 -0.44434 0.73040 1.01802 1.32165 1.34096 1.49867 1.53496 2.12853 2.17921 2.55321 2.94157 3.39646 3.74254 4.22300 4.36379 4.43364 4.51036 4.78980 4.88321 4.99723 5.07984 5.11025 5.25582 5.40776 5.48378 5.65162 5.82953 6.79393 7.16509 7.55526 8.62082 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.019995 B = 0.009474 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.047233 B = 2954.637182 C = 4263.305144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.127 4.127 4 C -0.237 4.237 5 C 0.185 3.815 6 O -0.169 6.169 7 C -0.425 4.425 8 H 0.115 0.885 9 C -0.019 4.019 10 N -0.901 5.901 11 Si 1.030 2.970 12 H -0.259 1.259 13 H -0.271 1.271 14 H -0.243 1.243 15 C -0.437 4.437 16 C 0.546 3.454 17 O -0.568 6.568 18 O -0.505 6.505 19 S 0.250 5.750 20 H 0.089 0.911 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.151 0.849 26 H 0.278 0.722 27 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 -13.090 -7.447 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 C -0.247 4.247 4 C -0.271 4.271 5 C 0.118 3.882 6 O -0.070 6.070 7 C -0.501 4.501 8 H 0.132 0.868 9 C -0.220 4.220 10 N -0.536 5.536 11 Si 0.847 3.153 12 H -0.184 1.184 13 H -0.196 1.196 14 H -0.166 1.166 15 C -0.553 4.553 16 C 0.397 3.603 17 O -0.464 6.464 18 O -0.317 6.317 19 S 0.512 5.488 20 H 0.108 0.892 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.114 0.886 24 H 0.121 0.879 25 H 0.168 0.832 26 H 0.087 0.913 27 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -5.180 -13.063 -8.583 16.466 hybrid contribution 0.535 1.489 2.238 2.740 sum -4.645 -11.574 -6.345 13.993 Atomic orbital electron populations 1.21800 0.92898 1.03517 1.02198 1.20448 0.97207 0.86649 1.05345 1.24572 0.99984 1.02688 0.97484 1.19921 1.11791 0.93666 1.01691 1.19264 0.90656 0.90076 0.88184 1.84087 1.70854 1.37299 1.14731 1.22201 1.47315 1.01647 0.78934 0.86790 1.26923 0.94826 0.94901 1.05303 1.70280 1.40532 1.08063 1.34733 0.84455 0.80011 0.78409 0.72430 1.18393 1.19607 1.16634 1.21242 1.36873 1.02294 0.94905 1.18115 0.74786 0.86781 0.80585 1.91016 1.50023 1.44903 1.60463 1.84944 1.81563 1.42343 1.22881 1.82023 1.63840 0.98605 1.04315 0.89199 0.93440 0.92284 0.88581 0.87891 0.83192 0.91312 0.72204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.90 71.98 0.71 -1.91 15 2 C -0.06 -1.17 6.36 29.85 0.19 -0.98 15 3 C -0.13 -3.98 5.51 24.62 0.14 -3.84 15 4 C -0.24 -9.65 9.09 21.18 0.19 -9.46 15 5 C 0.18 9.53 6.67 22.09 0.15 9.67 15 6 O -0.17 -10.57 8.63 -3.59 -0.03 -10.61 15 7 C -0.43 -24.60 9.56 67.93 0.65 -23.95 15 8 H 0.11 5.77 5.57 -2.91 -0.02 5.75 15 9 C -0.02 -1.06 5.49 84.85 0.47 -0.60 15 10 N -0.90 -56.74 13.67 21.62 0.30 -56.45 15 11 Si 1.03 41.57 29.55 68.60 2.03 43.60 15 12 H -0.26 -9.88 7.11 99.48 0.71 -9.18 15 13 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 14 H -0.24 -8.82 7.11 99.48 0.71 -8.11 15 15 C -0.44 -20.39 6.29 22.93 0.14 -20.25 15 16 C 0.55 26.31 8.08 68.63 0.55 26.87 15 17 O -0.57 -33.43 16.59 25.00 0.41 -33.01 15 18 O -0.50 -17.93 13.31 -58.96 -0.78 -18.71 15 19 S 0.25 8.09 22.76 -56.49 -1.29 6.80 15 20 H 0.09 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 15 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 15 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.10 1.59 8.14 -2.39 -0.02 1.57 15 25 H 0.15 5.83 6.18 -2.91 -0.02 5.81 15 26 H 0.28 15.86 8.31 -92.70 -0.77 15.09 15 27 H 0.42 10.87 8.98 -74.05 -0.67 10.21 15 Total: -1.00 -81.12 262.52 4.38 -76.74 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.55 Total: 16.08 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 3.19 Total: -24.44 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.30 Total: -56.45 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: -0.40 Total: -62.33 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 8.09 SS G_CDS: -1.29 Total: 6.80 kcal Total: -81.12 4.38 -76.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069976841.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.519 kcal (2) G-P(sol) polarization free energy of solvation -81.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds