Wall clock time and date at job start Mon Mar 30 2020 04:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47304 * 2 1 4 4 C 1.50702 * 109.47468 * 240.00119 * 2 1 3 5 5 H 1.08002 * 119.99958 * 240.00098 * 4 2 1 6 6 C 1.37872 * 119.99760 * 60.00096 * 4 2 1 7 7 N 1.31514 * 120.00231 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99787 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47197 * 89.99732 * 8 6 4 10 10 H 1.48498 * 109.46879 * 209.99590 * 8 6 4 11 11 H 1.48497 * 109.47150 * 329.99997 * 8 6 4 12 12 N 1.46901 * 109.47283 * 120.00012 * 2 1 3 13 13 C 1.46899 * 111.00123 * 58.95298 * 12 2 1 14 14 C 1.46903 * 110.99861 * 295.00460 * 12 2 1 15 15 C 1.53001 * 109.47128 * 189.99868 * 14 12 2 16 16 N 1.46903 * 109.47128 * 179.97438 * 15 14 12 17 17 C 1.46961 * 110.99781 * 190.00082 * 16 15 14 18 18 C 1.53049 * 109.36212 * 183.18915 * 17 16 15 19 19 N 1.46956 * 109.37889 * 301.58202 * 18 17 16 20 20 C 1.46998 * 110.85606 * 59.31765 * 19 18 17 21 21 C 1.46954 * 110.99536 * 313.79527 * 16 15 14 22 22 H 1.09002 * 109.47147 * 59.99974 * 1 2 3 23 23 H 1.09000 * 109.47304 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47332 * 299.99875 * 1 2 3 25 25 H 0.96997 * 119.99678 * 180.02562 * 7 6 4 26 26 H 1.09006 * 109.47358 * 296.05030 * 13 12 2 27 27 H 1.09002 * 109.47022 * 56.04197 * 13 12 2 28 28 H 1.09000 * 109.47874 * 176.04991 * 13 12 2 29 29 H 1.09000 * 109.47502 * 69.99678 * 14 12 2 30 30 H 1.09002 * 109.47049 * 309.99601 * 14 12 2 31 31 H 1.09000 * 109.47085 * 59.99554 * 15 14 12 32 32 H 1.09002 * 109.46937 * 299.99801 * 15 14 12 33 33 H 1.08997 * 109.49026 * 63.21842 * 17 16 15 34 34 H 1.09001 * 109.48575 * 303.15033 * 17 16 15 35 35 H 1.09002 * 109.49200 * 61.56352 * 18 17 16 36 36 H 1.09002 * 109.48985 * 181.60771 * 18 17 16 37 37 H 1.00899 * 111.00107 * 183.20040 * 19 18 17 38 38 H 1.09005 * 109.48570 * 180.72396 * 20 19 18 39 39 H 1.08997 * 109.50642 * 60.67078 * 20 19 18 40 40 H 1.09002 * 109.48968 * 296.77609 * 21 16 15 41 41 H 1.08994 * 109.49291 * 56.84982 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4867 -0.1412 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6486 0.0391 2.4181 15 6 2.3787 -0.5662 3.6186 16 7 2.0081 0.1658 4.8372 17 6 2.8615 -0.2268 5.9674 18 6 2.3932 0.4968 7.2321 19 7 2.4506 1.9488 7.0127 20 6 1.5972 2.3413 5.8820 21 6 2.0654 1.6176 4.6172 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7090 1.1614 -3.4844 26 1 0.4418 -2.0731 1.3348 27 1 1.8166 -2.5950 0.3318 28 1 1.9616 -2.5869 2.1059 29 1 0.5721 -0.0345 2.5726 30 1 1.9296 1.0870 2.3125 31 1 3.4552 -0.4926 3.4641 32 1 2.0977 -1.6141 3.7242 33 1 3.8952 0.0453 5.7543 34 1 2.7923 -1.3041 6.1182 35 1 1.3685 0.2037 7.4605 36 1 3.0424 0.2291 8.0658 37 1 2.1962 2.4513 7.8498 38 1 1.6663 3.4187 5.7312 39 1 0.5633 2.0695 6.0949 40 1 3.0902 1.9107 4.3889 41 1 1.4160 1.8851 3.7837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070800567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:25 Heat of formation + Delta-G solvation = 20.239822 kcal Electronic energy + Delta-G solvation = -18164.707785 eV Core-core repulsion = 15500.771375 eV Total energy + Delta-G solvation = -2663.936410 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.15028 -37.19987 -34.56817 -32.62696 -30.99580 -29.52396 -27.78687 -25.97206 -25.12802 -23.95616 -23.46082 -21.06095 -19.74671 -18.94711 -16.96629 -16.13271 -15.32472 -15.01417 -14.83560 -14.63275 -14.52921 -14.16575 -13.68987 -13.29837 -13.23997 -12.58422 -12.24278 -11.94451 -11.67967 -11.43033 -11.30066 -11.10338 -10.97215 -10.72901 -10.64041 -10.59910 -10.49280 -10.17569 -9.99538 -9.69494 -8.84632 -8.66972 -8.37382 -8.17684 -7.11758 -5.99266 -4.02898 3.31931 3.38527 3.42713 3.94836 4.07995 4.43871 4.84804 5.00971 5.13216 5.19498 5.30727 5.33278 5.37784 5.47219 5.53566 5.67375 5.72639 5.85777 5.95541 6.03045 6.06804 6.21816 6.34327 6.41817 6.53077 6.70442 6.78169 6.86603 6.93548 7.06533 7.15315 7.18581 7.25624 7.53913 7.74370 7.85551 8.14814 8.40903 8.62826 9.03042 9.62071 11.07950 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048895 B = 0.004652 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.521309 B = 6017.058183 C = 6265.420691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.536 5.536 13 C 0.034 3.966 14 C 0.054 3.946 15 C 0.060 3.940 16 N -0.541 5.541 17 C 0.056 3.944 18 C 0.060 3.940 19 N -0.693 5.693 20 C 0.059 3.941 21 C 0.049 3.951 22 H 0.087 0.913 23 H 0.029 0.971 24 H 0.007 0.993 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.340 0.660 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.042 0.958 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 0.155 16.598 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.115 4.115 14 C -0.075 4.075 15 C -0.067 4.067 16 N -0.267 5.267 17 C -0.072 4.072 18 C -0.070 4.070 19 N -0.325 5.325 20 C -0.071 4.071 21 C -0.079 4.079 22 H 0.106 0.894 23 H 0.048 0.952 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.158 0.842 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.388 0.100 16.148 16.208 hybrid contribution -0.739 -0.275 -0.644 1.018 sum 0.649 -0.174 15.505 15.519 Atomic orbital electron populations 1.22387 1.00845 0.99332 1.00461 1.19296 0.89757 0.94470 0.85956 0.94455 1.21128 1.30529 1.12446 0.89705 0.91939 1.24927 0.95265 0.95120 0.98988 1.69889 1.37146 1.23040 1.23351 0.86528 0.79239 0.79276 0.82552 1.20839 1.21304 1.19851 1.62316 1.59587 1.02051 1.02079 1.22258 0.96834 0.91260 1.01144 1.22108 0.97252 0.97992 0.90126 1.22146 0.98489 0.97940 0.88161 1.62224 1.53319 1.05567 1.05555 1.22126 0.95132 0.99329 0.90635 1.21979 0.99851 0.87818 0.97307 1.60522 1.57209 1.06043 1.08688 1.22037 0.94630 0.99363 0.91046 1.22269 1.00738 0.87623 0.97248 0.89426 0.95151 0.97391 0.93041 0.96537 0.90805 0.93974 0.94905 0.91547 0.94147 0.90894 0.94109 0.90565 0.94429 0.90602 0.84248 0.90419 0.94372 0.93963 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.28 37.15 0.31 -3.89 16 2 C 0.21 5.38 2.34 -68.87 -0.16 5.21 16 3 H 0.04 1.05 8.03 -51.93 -0.42 0.63 16 4 C -0.50 -13.74 7.88 -34.44 -0.27 -14.01 16 5 H 0.06 1.72 6.77 -52.49 -0.36 1.37 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.97 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.54 -11.69 4.74 -236.28 -1.12 -12.81 16 13 C 0.03 0.67 8.56 60.06 0.51 1.18 16 14 C 0.05 1.01 3.66 -3.82 -0.01 0.99 16 15 C 0.06 0.96 5.20 -3.82 -0.02 0.94 16 16 N -0.54 -7.68 4.86 -234.46 -1.14 -8.82 16 17 C 0.06 0.68 5.58 -3.77 -0.02 0.66 16 18 C 0.06 0.62 6.72 -3.77 -0.03 0.59 16 19 N -0.69 -7.27 6.91 -113.60 -0.78 -8.06 16 20 C 0.06 0.66 6.72 -3.74 -0.03 0.64 16 21 C 0.05 0.68 4.93 -3.76 -0.02 0.66 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 23 H 0.03 0.72 6.47 -51.93 -0.34 0.39 16 24 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.02 0.33 6.51 -51.93 -0.34 -0.01 16 27 H 0.07 1.57 6.41 -51.93 -0.33 1.24 16 28 H 0.04 0.72 6.47 -51.93 -0.34 0.39 16 29 H 0.03 0.64 6.94 -51.93 -0.36 0.28 16 30 H 0.07 1.26 6.12 -51.93 -0.32 0.94 16 31 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.07 1.14 6.55 -51.93 -0.34 0.80 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.34 2.80 8.90 -39.29 -0.35 2.45 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.25 5.99 -51.93 -0.31 0.94 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -28.79 305.22 -9.64 -38.43 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.97 Total: 0.76 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 0.17 Total: -5.52 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -2.42 Total: -54.66 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.79 -9.64 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.673 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds