Wall clock time and date at job start Mon Mar 30 2020 04:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47304 * 2 1 4 4 C 1.50702 * 109.47468 * 240.00119 * 2 1 3 5 5 H 1.08002 * 119.99958 * 240.00098 * 4 2 1 6 6 C 1.37872 * 119.99760 * 60.00096 * 4 2 1 7 7 N 1.31514 * 120.00231 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99787 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47197 * 89.99732 * 8 6 4 10 10 H 1.48498 * 109.46879 * 209.99590 * 8 6 4 11 11 H 1.48497 * 109.47150 * 329.99997 * 8 6 4 12 12 N 1.46901 * 109.47283 * 120.00012 * 2 1 3 13 13 C 1.46899 * 111.00123 * 58.95298 * 12 2 1 14 14 C 1.46903 * 110.99861 * 295.00460 * 12 2 1 15 15 C 1.53001 * 109.47128 * 189.99868 * 14 12 2 16 16 N 1.46903 * 109.47128 * 179.97438 * 15 14 12 17 17 C 1.46961 * 110.99781 * 190.00082 * 16 15 14 18 18 C 1.53049 * 109.36212 * 183.18915 * 17 16 15 19 19 N 1.46956 * 109.37889 * 301.58202 * 18 17 16 20 20 C 1.46998 * 110.85606 * 59.31765 * 19 18 17 21 21 C 1.46954 * 110.99536 * 313.79527 * 16 15 14 22 22 H 1.09002 * 109.47147 * 59.99974 * 1 2 3 23 23 H 1.09000 * 109.47304 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47332 * 299.99875 * 1 2 3 25 25 H 0.96997 * 119.99678 * 180.02562 * 7 6 4 26 26 H 1.09006 * 109.47358 * 296.05030 * 13 12 2 27 27 H 1.09002 * 109.47022 * 56.04197 * 13 12 2 28 28 H 1.09000 * 109.47874 * 176.04991 * 13 12 2 29 29 H 1.09000 * 109.47502 * 69.99678 * 14 12 2 30 30 H 1.09002 * 109.47049 * 309.99601 * 14 12 2 31 31 H 1.09000 * 109.47085 * 59.99554 * 15 14 12 32 32 H 1.09002 * 109.46937 * 299.99801 * 15 14 12 33 33 H 1.08997 * 109.49026 * 63.21842 * 17 16 15 34 34 H 1.09001 * 109.48575 * 303.15033 * 17 16 15 35 35 H 1.09002 * 109.49200 * 61.56352 * 18 17 16 36 36 H 1.09002 * 109.48985 * 181.60771 * 18 17 16 37 37 H 1.00899 * 111.00107 * 183.20040 * 19 18 17 38 38 H 1.09005 * 109.48570 * 180.72396 * 20 19 18 39 39 H 1.08997 * 109.50642 * 60.67078 * 20 19 18 40 40 H 1.09002 * 109.48968 * 296.77609 * 21 16 15 41 41 H 1.08994 * 109.49291 * 56.84982 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4867 -0.1412 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6486 0.0391 2.4181 15 6 2.3787 -0.5662 3.6186 16 7 2.0081 0.1658 4.8372 17 6 2.8615 -0.2268 5.9674 18 6 2.3932 0.4968 7.2321 19 7 2.4506 1.9488 7.0127 20 6 1.5972 2.3413 5.8820 21 6 2.0654 1.6176 4.6172 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7090 1.1614 -3.4844 26 1 0.4418 -2.0731 1.3348 27 1 1.8166 -2.5950 0.3318 28 1 1.9616 -2.5869 2.1059 29 1 0.5721 -0.0345 2.5726 30 1 1.9296 1.0870 2.3125 31 1 3.4552 -0.4926 3.4641 32 1 2.0977 -1.6141 3.7242 33 1 3.8952 0.0453 5.7543 34 1 2.7923 -1.3041 6.1182 35 1 1.3685 0.2037 7.4605 36 1 3.0424 0.2291 8.0658 37 1 2.1962 2.4513 7.8498 38 1 1.6663 3.4187 5.7312 39 1 0.5633 2.0695 6.0949 40 1 3.0902 1.9107 4.3889 41 1 1.4160 1.8851 3.7837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070800567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:25 Heat of formation + Delta-G solvation = -2.256120 kcal Electronic energy + Delta-G solvation = -18165.683283 eV Core-core repulsion = 15500.771375 eV Total energy + Delta-G solvation = -2664.911907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27471 -38.82542 -35.80169 -34.51971 -31.97299 -31.22182 -29.36159 -27.48376 -27.08578 -25.40479 -24.43482 -22.57317 -20.93684 -20.53177 -18.22592 -17.97953 -16.94502 -16.35114 -16.28226 -15.84639 -15.53891 -15.46052 -15.15041 -14.92816 -14.50168 -14.24480 -13.77195 -13.30191 -13.16689 -13.02459 -12.81670 -12.58637 -12.57948 -12.41081 -12.24456 -12.04083 -11.93949 -11.83065 -11.68077 -11.32995 -10.89313 -10.49890 -9.53796 -9.27955 -8.88165 -8.10733 -6.21782 1.42988 1.43906 1.54676 2.42880 2.80314 3.18598 3.28141 3.54011 3.91541 3.96741 4.14425 4.20880 4.36852 4.41267 4.45677 4.53734 4.59143 4.61523 4.71248 4.81174 4.83860 4.86996 4.91060 4.94995 4.97819 5.03455 5.10899 5.17538 5.22720 5.52775 5.69685 5.77917 5.89810 5.97727 6.12969 6.19478 6.46797 6.50140 6.73554 6.91642 7.47513 8.95729 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048895 B = 0.004652 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.521309 B = 6017.058183 C = 6265.420691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.058 0.942 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.547 5.547 13 C 0.039 3.961 14 C 0.062 3.938 15 C 0.074 3.926 16 N -0.544 5.544 17 C 0.053 3.947 18 C 0.063 3.937 19 N -0.699 5.699 20 C 0.065 3.935 21 C 0.048 3.952 22 H 0.061 0.939 23 H 0.031 0.969 24 H 0.022 0.978 25 H 0.261 0.739 26 H 0.015 0.985 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.098 0.902 37 H 0.356 0.644 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.028 0.972 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 -0.698 17.945 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.270 5.270 13 C -0.110 4.110 14 C -0.066 4.066 15 C -0.054 4.054 16 N -0.270 5.270 17 C -0.075 4.075 18 C -0.066 4.066 19 N -0.333 5.333 20 C -0.065 4.065 21 C -0.080 4.080 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.175 0.825 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.641 -0.755 17.531 17.624 hybrid contribution -0.804 0.016 -0.999 1.283 sum 0.837 -0.738 16.532 16.570 Atomic orbital electron populations 1.22175 1.00300 0.99149 0.99869 1.19053 0.90028 0.92826 0.87249 0.97916 1.21390 1.30678 1.12505 0.90860 0.92349 1.25706 0.95390 0.95785 1.01883 1.70018 1.37942 1.24178 1.24013 0.85520 0.78831 0.78215 0.78838 1.20090 1.20999 1.19383 1.62212 1.59873 1.02967 1.01995 1.22240 0.96899 0.90093 1.01722 1.22061 0.97204 0.97456 0.89925 1.21939 0.97362 0.98272 0.87840 1.62268 1.53852 1.05626 1.05260 1.22255 0.94250 1.00477 0.90523 1.21993 1.00345 0.87406 0.96856 1.60493 1.57062 1.06496 1.09199 1.21955 0.94540 0.99769 0.90244 1.22264 0.99677 0.87728 0.98348 0.92021 0.94946 0.95855 0.92979 0.96626 0.92412 0.90840 0.95420 0.92514 0.95048 0.90088 0.95044 0.89280 0.94347 0.88333 0.82507 0.89137 0.94390 0.95355 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.73 8.28 71.98 0.60 -7.13 16 2 C 0.22 11.18 2.34 44.17 0.10 11.29 16 3 H 0.00 0.17 8.03 -2.39 -0.02 0.15 16 4 C -0.52 -28.69 7.88 25.60 0.20 -28.49 16 5 H 0.06 3.23 6.77 -2.91 -0.02 3.21 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -53.48 11.32 21.45 0.24 -53.24 16 8 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.55 -23.84 4.74 -901.46 -4.28 -28.11 16 13 C 0.04 1.50 8.56 127.69 1.09 2.59 16 14 C 0.06 2.30 3.66 86.30 0.32 2.62 16 15 C 0.07 2.27 5.20 86.30 0.45 2.72 16 16 N -0.54 -14.77 4.86 -895.69 -4.35 -19.12 16 17 C 0.05 1.18 5.58 86.31 0.48 1.66 16 18 C 0.06 1.13 6.72 86.31 0.58 1.71 16 19 N -0.70 -13.07 6.91 -513.31 -3.54 -16.62 16 20 C 0.06 1.36 6.72 86.31 0.58 1.94 16 21 C 0.05 1.29 4.93 86.31 0.43 1.72 16 22 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 23 H 0.03 1.55 6.47 -2.39 -0.02 1.53 16 24 H 0.02 1.03 6.75 -2.39 -0.02 1.02 16 25 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 26 H 0.02 0.60 6.51 -2.38 -0.02 0.58 16 27 H 0.06 2.42 6.41 -2.39 -0.02 2.41 16 28 H 0.07 2.38 6.47 -2.39 -0.02 2.36 16 29 H 0.03 1.06 6.94 -2.39 -0.02 1.04 16 30 H 0.06 2.20 6.12 -2.39 -0.01 2.19 16 31 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 32 H 0.08 2.36 6.55 -2.39 -0.02 2.34 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.36 4.89 8.90 -89.69 -0.80 4.09 16 38 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 2.15 5.99 -2.39 -0.01 2.14 16 Total: -1.00 -61.21 305.22 -4.42 -65.63 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.20 Total: 13.80 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 5.27 Total: -8.34 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -11.93 Total: -117.09 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -61.21 -4.42 -65.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.376 kcal (2) G-P(sol) polarization free energy of solvation -61.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds