Wall clock time and date at job start Mon Mar 30 2020 05:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86795 * 120.00062 * 2 1 4 4 H 1.48501 * 109.47403 * 240.28050 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27753 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27768 * 3 2 1 7 7 C 1.38815 * 119.99763 * 180.28075 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72465 * 7 2 1 9 9 N 1.36915 * 119.99885 * 359.71813 * 7 2 1 10 10 C 1.38835 * 119.99488 * 180.02562 * 9 7 2 11 11 C 1.39200 * 119.70710 * 359.72245 * 10 9 7 12 12 C 1.38341 * 119.11038 * 179.77404 * 11 10 9 13 13 C 1.38839 * 118.52060 * 0.49518 * 12 11 10 14 14 C 1.38253 * 119.32673 * 359.75044 * 13 12 11 15 15 Br 1.89098 * 119.57911 * 179.97438 * 14 13 12 16 16 N 1.31967 * 120.84356 * 0.02562 * 14 13 12 17 17 H 0.97000 * 119.99542 * 359.72473 * 1 2 3 18 18 H 0.96999 * 120.00262 * 0.02562 * 9 7 2 19 19 H 1.07997 * 120.44294 * 0.02562 * 11 10 9 20 20 H 1.08003 * 120.73979 * 180.22663 * 12 11 10 21 21 H 1.07995 * 120.33430 * 179.77051 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.0984 1.6994 -1.2159 5 1 1.2848 2.7465 0.0068 6 1 3.1085 1.6934 1.2090 7 6 2.0098 -1.2022 -0.0059 8 1 3.0898 -1.2022 -0.0104 9 7 1.3251 -2.3879 -0.0059 10 6 2.0194 -3.5902 -0.0112 11 6 3.4113 -3.5830 -0.0225 12 6 4.0906 -4.7882 -0.0229 13 6 3.3533 -5.9647 -0.0226 14 6 1.9724 -5.8984 -0.0167 15 35 0.9613 -7.4964 -0.0170 16 7 1.3509 -4.7343 -0.0118 17 1 -0.4849 0.8401 0.0040 18 1 0.3552 -2.3879 -0.0021 19 1 3.9537 -2.6491 -0.0266 20 1 5.1703 -4.8133 -0.0278 21 1 3.8535 -6.9218 -0.0267 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075621050.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:38 Heat of formation + Delta-G solvation = 20.539493 kcal Electronic energy + Delta-G solvation = -9902.722744 eV Core-core repulsion = 7824.029768 eV Total energy + Delta-G solvation = -2078.692977 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.81635 -37.17813 -33.99613 -33.32772 -31.97274 -29.48679 -26.88005 -23.93675 -23.14717 -19.70261 -18.57708 -17.29767 -16.55592 -16.08888 -15.32551 -15.31973 -14.94466 -13.74842 -13.56437 -13.23835 -12.77784 -12.47304 -12.14121 -12.11827 -11.49016 -11.32469 -10.77438 -10.33454 -10.24490 -8.85248 -8.53921 -5.85073 0.36794 0.51828 0.71338 1.43411 1.51479 1.55379 2.23496 2.79982 3.08618 3.32119 4.03099 4.47231 4.53038 4.64001 4.84005 5.22431 5.27176 5.56569 5.70212 6.01510 6.59960 6.94476 7.34611 7.70030 8.64289 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.062807 B = 0.006319 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.700722 B = 4430.275402 C = 4866.132871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.027 4.027 3 Si 1.008 2.992 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.556 5.556 10 C 0.354 3.646 11 C -0.260 4.260 12 C -0.014 4.014 13 C -0.255 4.255 14 C 0.169 3.831 15 Br -0.023 7.023 16 N -0.588 5.588 17 H 0.278 0.722 18 H 0.391 0.609 19 H 0.134 0.866 20 H 0.171 0.829 21 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.730 -10.366 -0.037 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.227 4.227 3 Si 0.830 3.170 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.452 4.452 8 H 0.135 0.865 9 N -0.164 5.164 10 C 0.110 3.890 11 C -0.288 4.288 12 C -0.040 4.040 13 C -0.284 4.284 14 C -0.051 4.051 15 Br 0.060 6.940 16 N -0.311 5.311 17 H 0.087 0.913 18 H 0.224 0.776 19 H 0.152 0.848 20 H 0.188 0.812 21 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.325 -10.427 -0.037 11.708 hybrid contribution 0.312 1.160 0.005 1.201 sum 5.637 -9.267 -0.032 10.847 Atomic orbital electron populations 1.69828 1.07767 1.29676 1.49127 1.26372 0.96550 1.03411 0.96362 0.84745 0.77432 0.75165 0.79634 1.18595 1.20774 1.18579 1.20108 0.93708 0.82431 1.48984 0.86525 1.40896 1.08159 1.01771 1.65539 1.18604 0.89827 0.85138 0.95393 1.21471 0.92463 1.00426 1.14432 1.21555 1.01158 0.90081 0.91180 1.21524 0.91341 1.00696 1.14834 1.22527 0.91921 0.90734 0.99934 1.96587 1.74944 1.24911 1.97548 1.66636 1.41558 0.97417 1.25499 0.91292 0.77603 0.84799 0.81204 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.80 13.05 21.65 0.28 -50.51 14 2 C -0.03 -1.37 5.50 84.87 0.47 -0.90 14 3 Si 1.01 39.43 29.55 68.60 2.03 41.46 14 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 14 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 14 6 H -0.26 -9.71 7.11 99.48 0.71 -9.01 14 7 C -0.32 -16.57 9.54 84.04 0.80 -15.77 14 8 H 0.12 5.48 5.65 -2.91 -0.02 5.46 14 9 N -0.56 -29.19 5.44 -189.21 -1.03 -30.22 14 10 C 0.35 16.84 7.62 133.10 1.01 17.85 14 11 C -0.26 -10.47 9.33 22.53 0.21 -10.26 14 12 C -0.01 -0.45 10.16 22.44 0.23 -0.22 14 13 C -0.25 -8.29 9.83 22.42 0.22 -8.07 14 14 C 0.17 6.53 7.16 84.68 0.61 7.14 14 15 Br -0.02 -0.74 33.86 -20.37 -0.69 -1.43 14 16 N -0.59 -27.22 10.36 -188.16 -1.95 -29.17 14 17 H 0.28 14.33 8.31 -92.71 -0.77 13.56 14 18 H 0.39 21.89 8.01 -92.71 -0.74 21.14 14 19 H 0.13 5.18 5.94 -2.91 -0.02 5.16 14 20 H 0.17 3.80 8.06 -2.91 -0.02 3.77 14 21 H 0.16 3.95 8.06 -2.91 -0.02 3.93 14 Total: -1.00 -58.10 216.76 2.72 -55.39 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.53 Total: 24.70 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 3.55 Total: -10.22 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -2.70 Total: -109.90 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -0.69 Total: -1.43 kcal Total: -58.10 2.72 -55.39 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075621050.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.928 kcal (2) G-P(sol) polarization free energy of solvation -58.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds