Wall clock time and date at job start Mon Mar 30 2020 04:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47263 * 2 1 4 4 C 1.50703 * 109.47255 * 120.00350 * 2 1 3 5 5 H 1.07996 * 120.00013 * 119.99816 * 4 2 1 6 6 C 1.37872 * 119.99724 * 300.00148 * 4 2 1 7 7 N 1.31517 * 120.00195 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99865 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46709 * 90.00036 * 8 6 4 10 10 H 1.48496 * 109.47134 * 209.99873 * 8 6 4 11 11 H 1.48496 * 109.47436 * 330.00268 * 8 6 4 12 12 N 1.46907 * 109.47274 * 240.00104 * 2 1 3 13 13 C 1.46902 * 110.99736 * 84.99920 * 12 2 1 14 14 C 1.52997 * 109.47112 * 174.82472 * 13 12 2 15 15 H 1.09009 * 109.48882 * 56.22344 * 14 13 12 16 16 C 1.53046 * 109.49150 * 296.17949 * 14 13 12 17 17 N 1.46956 * 109.36620 * 181.62658 * 16 14 13 18 18 C 1.46901 * 111.00087 * 183.18883 * 17 16 14 19 19 C 1.46963 * 110.87685 * 59.32392 * 17 16 14 20 20 C 1.53046 * 109.36270 * 300.67815 * 19 17 16 21 21 N 1.46955 * 109.48999 * 176.28703 * 14 13 12 22 22 C 1.46901 * 111.00033 * 303.15840 * 21 14 13 23 23 H 1.09007 * 109.46926 * 60.00038 * 1 2 3 24 24 H 1.09003 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47568 * 299.99737 * 1 2 3 26 26 H 0.96995 * 120.00000 * 179.97438 * 7 6 4 27 27 H 1.00901 * 110.99747 * 321.05094 * 12 2 1 28 28 H 1.09003 * 109.47530 * 294.83001 * 13 12 2 29 29 H 1.09007 * 109.47267 * 54.83040 * 13 12 2 30 30 H 1.08999 * 109.49109 * 301.59862 * 16 14 13 31 31 H 1.09006 * 109.48568 * 61.64187 * 16 14 13 32 32 H 1.08997 * 109.47367 * 60.00601 * 18 17 16 33 33 H 1.09000 * 109.46981 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47128 * 299.99734 * 18 17 16 35 35 H 1.08995 * 109.49088 * 60.64746 * 19 17 16 36 36 H 1.09005 * 109.48527 * 180.69063 * 19 17 16 37 37 H 1.09005 * 109.49121 * 178.37282 * 20 19 17 38 38 H 1.09004 * 109.49007 * 298.40886 * 20 19 17 39 39 H 1.08998 * 109.47276 * 66.42703 * 22 21 14 40 40 H 1.09006 * 109.47060 * 186.42650 * 22 21 14 41 41 H 1.08998 * 109.47111 * 306.42642 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1206 4.0078 9 1 3.6296 -0.5460 4.4122 10 1 1.3431 -0.9495 5.1119 11 1 2.4859 -2.5664 3.7118 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.7158 -0.4970 -3.5392 15 1 2.1514 -1.4034 -3.7586 16 6 4.1629 -0.8654 -3.2035 17 7 4.7806 -1.5216 -4.3642 18 6 6.1486 -1.9589 -4.0555 19 6 4.7627 -0.6364 -5.5372 20 6 3.3157 -0.2681 -5.8730 21 7 2.6980 0.3881 -4.7122 22 6 1.3300 0.8254 -5.0209 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7088 1.1612 3.4844 27 1 1.4495 -1.4979 -1.4101 28 1 1.0750 0.5449 -2.6103 29 1 2.6853 1.0924 -2.0855 30 1 4.7204 0.0383 -2.9572 31 1 4.1767 -1.5449 -2.3512 32 1 6.1257 -2.6655 -3.2259 33 1 6.5824 -2.4408 -4.9317 34 1 6.7529 -1.0946 -3.7801 35 1 5.3271 0.2698 -5.3175 36 1 5.2143 -1.1491 -6.3866 37 1 3.3018 0.4117 -6.7250 38 1 2.7583 -1.1717 -6.1197 39 1 0.9621 1.4627 -4.2168 40 1 1.3297 1.3845 -5.9566 41 1 0.6831 -0.0464 -5.1183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082669076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:28 Heat of formation + Delta-G solvation = 15.372400 kcal Electronic energy + Delta-G solvation = -18273.499629 eV Core-core repulsion = 15609.352152 eV Total energy + Delta-G solvation = -2664.147477 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.38945 -36.14872 -35.19435 -32.80928 -30.97550 -29.24563 -27.90636 -25.28491 -25.20272 -24.63524 -22.93669 -21.15369 -20.19904 -19.44104 -16.36724 -15.79038 -15.60550 -15.09245 -14.64401 -14.54720 -14.51370 -13.95976 -13.62648 -13.12801 -12.89831 -12.43459 -12.28994 -12.09281 -11.82267 -11.57802 -11.52583 -11.35970 -10.94587 -10.89700 -10.76706 -10.65860 -10.40926 -10.27367 -10.07746 -9.79703 -8.97012 -8.33948 -8.32140 -8.15768 -7.19136 -5.95805 -3.98886 3.34738 3.40784 3.44956 3.95819 4.04600 4.47144 4.92610 5.06571 5.13653 5.29543 5.35819 5.39904 5.42842 5.52014 5.58379 5.61180 5.67642 5.76155 5.83903 5.91341 5.92884 5.98886 6.17012 6.27705 6.39535 6.51644 6.71786 6.86334 7.03079 7.08242 7.11969 7.24897 7.29198 7.41253 7.76106 7.91195 8.30205 8.56114 8.64611 9.08376 9.66402 11.11328 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029313 B = 0.005684 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.973835 B = 4925.310663 C = 5719.976439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.213 3.787 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.682 5.682 13 C 0.067 3.933 14 C 0.094 3.906 15 H 0.044 0.956 16 C 0.073 3.927 17 N -0.550 5.550 18 C 0.027 3.973 19 C 0.056 3.944 20 C 0.059 3.941 21 N -0.542 5.542 22 C 0.024 3.976 23 H 0.003 0.997 24 H 0.027 0.973 25 H 0.088 0.912 26 H 0.259 0.741 27 H 0.324 0.676 28 H 0.022 0.978 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.024 0.976 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 -1.995 -15.544 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.063 4.063 14 C -0.015 4.015 15 H 0.062 0.938 16 C -0.055 4.055 17 N -0.275 5.275 18 C -0.121 4.121 19 C -0.073 4.073 20 C -0.069 4.069 21 N -0.268 5.268 22 C -0.124 4.124 23 H 0.023 0.977 24 H 0.046 0.954 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.140 0.860 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 5.135 -1.795 -15.228 16.170 hybrid contribution -0.747 -0.235 0.628 1.004 sum 4.388 -2.030 -14.599 15.379 Atomic orbital electron populations 1.22426 1.00787 0.99122 1.00408 1.19160 0.89521 0.94389 0.86393 0.94904 1.21160 1.30072 1.12377 0.89593 0.91944 1.24951 0.95370 0.95231 0.99034 1.69886 1.37387 1.23267 1.23282 0.86513 0.78423 0.80027 0.82501 1.20803 1.21465 1.19946 1.60721 1.58017 1.09030 1.03405 1.21917 0.97777 0.96306 0.90344 1.21677 0.96399 0.93425 0.89958 0.93800 1.22137 0.93128 0.97946 0.92270 1.62197 1.19040 1.40431 1.05783 1.22306 0.88544 0.99673 1.01559 1.22145 0.96273 0.95114 0.93719 1.22121 0.94674 0.97192 0.92949 1.62121 1.19206 1.40709 1.04735 1.22388 0.88701 0.99662 1.01681 0.97749 0.95387 0.89299 0.93117 0.85988 0.95974 0.91097 0.94301 0.88424 0.91107 0.91895 0.95728 0.94215 0.90819 0.90659 0.94328 0.90770 0.91887 0.95736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.94 37.16 0.33 -3.73 16 2 C 0.21 5.35 2.57 -68.86 -0.18 5.18 16 3 H 0.03 0.91 7.72 -51.93 -0.40 0.51 16 4 C -0.49 -13.65 8.84 -34.44 -0.30 -13.95 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.84 11.32 55.43 0.63 -25.21 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.68 -14.35 5.64 -107.94 -0.61 -14.96 16 13 C 0.07 1.23 4.69 -3.82 -0.02 1.21 16 14 C 0.09 1.50 2.21 -67.66 -0.15 1.35 16 15 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 16 C 0.07 1.16 4.76 -3.77 -0.02 1.14 16 17 N -0.55 -7.58 4.97 -242.75 -1.21 -8.79 16 18 C 0.03 0.32 9.60 60.07 0.58 0.90 16 19 C 0.06 0.67 5.62 -3.77 -0.02 0.65 16 20 C 0.06 0.71 5.61 -3.77 -0.02 0.69 16 21 N -0.54 -7.67 4.78 -234.73 -1.12 -8.79 16 22 C 0.02 0.30 8.98 60.07 0.54 0.84 16 23 H 0.00 0.08 7.55 -51.93 -0.39 -0.31 16 24 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.32 6.57 8.53 -39.29 -0.34 6.23 16 28 H 0.02 0.40 5.72 -51.93 -0.30 0.11 16 29 H 0.07 1.41 7.93 -51.93 -0.41 0.99 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.70 7.77 -51.93 -0.40 1.30 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 37 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 40 H 0.06 0.66 8.02 -51.93 -0.42 0.25 16 41 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -28.45 316.10 -9.42 -37.87 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.50 Total: 2.85 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 0.64 Total: -4.30 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -2.31 Total: -57.75 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.45 -9.42 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082669076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.241 kcal (2) G-P(sol) polarization free energy of solvation -28.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds