Wall clock time and date at job start Mon Mar 30 2020 04:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47263 * 2 1 4 4 C 1.50703 * 109.47255 * 120.00350 * 2 1 3 5 5 H 1.07996 * 120.00013 * 119.99816 * 4 2 1 6 6 C 1.37872 * 119.99724 * 300.00148 * 4 2 1 7 7 N 1.31517 * 120.00195 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99865 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46709 * 90.00036 * 8 6 4 10 10 H 1.48496 * 109.47134 * 209.99873 * 8 6 4 11 11 H 1.48496 * 109.47436 * 330.00268 * 8 6 4 12 12 N 1.46907 * 109.47274 * 240.00104 * 2 1 3 13 13 C 1.46902 * 110.99736 * 84.99920 * 12 2 1 14 14 C 1.52997 * 109.47112 * 174.82472 * 13 12 2 15 15 H 1.09009 * 109.48882 * 56.22344 * 14 13 12 16 16 C 1.53046 * 109.49150 * 296.17949 * 14 13 12 17 17 N 1.46956 * 109.36620 * 181.62658 * 16 14 13 18 18 C 1.46901 * 111.00087 * 183.18883 * 17 16 14 19 19 C 1.46963 * 110.87685 * 59.32392 * 17 16 14 20 20 C 1.53046 * 109.36270 * 300.67815 * 19 17 16 21 21 N 1.46955 * 109.48999 * 176.28703 * 14 13 12 22 22 C 1.46901 * 111.00033 * 303.15840 * 21 14 13 23 23 H 1.09007 * 109.46926 * 60.00038 * 1 2 3 24 24 H 1.09003 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47568 * 299.99737 * 1 2 3 26 26 H 0.96995 * 120.00000 * 179.97438 * 7 6 4 27 27 H 1.00901 * 110.99747 * 321.05094 * 12 2 1 28 28 H 1.09003 * 109.47530 * 294.83001 * 13 12 2 29 29 H 1.09007 * 109.47267 * 54.83040 * 13 12 2 30 30 H 1.08999 * 109.49109 * 301.59862 * 16 14 13 31 31 H 1.09006 * 109.48568 * 61.64187 * 16 14 13 32 32 H 1.08997 * 109.47367 * 60.00601 * 18 17 16 33 33 H 1.09000 * 109.46981 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47128 * 299.99734 * 18 17 16 35 35 H 1.08995 * 109.49088 * 60.64746 * 19 17 16 36 36 H 1.09005 * 109.48527 * 180.69063 * 19 17 16 37 37 H 1.09005 * 109.49121 * 178.37282 * 20 19 17 38 38 H 1.09004 * 109.49007 * 298.40886 * 20 19 17 39 39 H 1.08998 * 109.47276 * 66.42703 * 22 21 14 40 40 H 1.09006 * 109.47060 * 186.42650 * 22 21 14 41 41 H 1.08998 * 109.47111 * 306.42642 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1206 4.0078 9 1 3.6296 -0.5460 4.4122 10 1 1.3431 -0.9495 5.1119 11 1 2.4859 -2.5664 3.7118 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.7158 -0.4970 -3.5392 15 1 2.1514 -1.4034 -3.7586 16 6 4.1629 -0.8654 -3.2035 17 7 4.7806 -1.5216 -4.3642 18 6 6.1486 -1.9589 -4.0555 19 6 4.7627 -0.6364 -5.5372 20 6 3.3157 -0.2681 -5.8730 21 7 2.6980 0.3881 -4.7122 22 6 1.3300 0.8254 -5.0209 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7088 1.1612 3.4844 27 1 1.4495 -1.4979 -1.4101 28 1 1.0750 0.5449 -2.6103 29 1 2.6853 1.0924 -2.0855 30 1 4.7204 0.0383 -2.9572 31 1 4.1767 -1.5449 -2.3512 32 1 6.1257 -2.6655 -3.2259 33 1 6.5824 -2.4408 -4.9317 34 1 6.7529 -1.0946 -3.7801 35 1 5.3271 0.2698 -5.3175 36 1 5.2143 -1.1491 -6.3866 37 1 3.3018 0.4117 -6.7250 38 1 2.7583 -1.1717 -6.1197 39 1 0.9621 1.4627 -4.2168 40 1 1.3297 1.3845 -5.9566 41 1 0.6831 -0.0464 -5.1183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082669076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:27 Heat of formation + Delta-G solvation = -6.154984 kcal Electronic energy + Delta-G solvation = -18274.433127 eV Core-core repulsion = 15609.352152 eV Total energy + Delta-G solvation = -2665.080975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54730 -37.80819 -36.41755 -34.65482 -32.53367 -30.34366 -29.51868 -27.25826 -26.33870 -26.09319 -24.04725 -22.46376 -22.09384 -20.65815 -18.36115 -17.09752 -16.85020 -16.61051 -16.20297 -15.83657 -15.59812 -15.26139 -14.94408 -14.75963 -14.59730 -13.76713 -13.46663 -13.35648 -13.29312 -13.09652 -12.86499 -12.76809 -12.67482 -12.44753 -12.32291 -12.16408 -12.03456 -11.89126 -11.59755 -11.53166 -10.99213 -10.47605 -9.41776 -9.26391 -8.94266 -8.08551 -6.19543 1.44207 1.44543 1.55551 2.44682 2.84319 2.98658 3.20043 3.68760 3.93845 4.01998 4.08289 4.21314 4.36760 4.41269 4.53785 4.57536 4.59523 4.68773 4.70127 4.74573 4.79770 4.86182 4.90932 4.94924 5.02135 5.02680 5.09624 5.11671 5.18018 5.41465 5.70025 5.80839 5.97182 5.98346 6.16826 6.20801 6.27750 6.64037 6.81366 6.95183 7.50382 8.97230 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029313 B = 0.005684 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.973835 B = 4925.310663 C = 5719.976439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.219 3.781 3 H -0.001 1.001 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.681 5.681 13 C 0.076 3.924 14 C 0.107 3.893 15 H 0.039 0.961 16 C 0.081 3.919 17 N -0.557 5.557 18 C 0.027 3.973 19 C 0.055 3.945 20 C 0.059 3.941 21 N -0.554 5.554 22 C 0.024 3.976 23 H 0.023 0.977 24 H 0.033 0.967 25 H 0.061 0.939 26 H 0.260 0.740 27 H 0.331 0.669 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.021 0.979 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.022 0.978 35 H 0.033 0.967 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.038 0.962 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.974 -2.812 -16.993 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.110 3.890 3 H 0.017 0.983 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.311 5.311 13 C -0.054 4.054 14 C -0.002 4.002 15 H 0.057 0.943 16 C -0.047 4.047 17 N -0.282 5.282 18 C -0.121 4.121 19 C -0.073 4.073 20 C -0.069 4.069 21 N -0.279 5.279 22 C -0.123 4.123 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.041 0.959 35 H 0.051 0.949 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.581 -2.618 -16.705 17.806 hybrid contribution -0.865 0.049 1.002 1.325 sum 4.716 -2.570 -15.703 16.596 Atomic orbital electron populations 1.22228 0.99969 0.99259 0.99977 1.18914 0.90021 0.92566 0.87502 0.98306 1.21446 1.30307 1.12433 0.90959 0.92597 1.25722 0.95482 0.95897 1.01916 1.70014 1.38117 1.24344 1.23951 0.85511 0.77869 0.79092 0.78852 1.20446 1.20937 1.19272 1.60564 1.57799 1.09407 1.03329 1.21831 0.97887 0.95385 0.90316 1.21411 0.95927 0.93092 0.89809 0.94260 1.21913 0.93274 0.96732 0.92806 1.62215 1.20181 1.40438 1.05349 1.22367 0.87543 0.99600 1.02583 1.22262 0.96489 0.94895 0.93681 1.22237 0.94306 0.97672 0.92653 1.62110 1.20365 1.40469 1.04993 1.22413 0.87797 0.99735 1.02397 0.95814 0.94816 0.91983 0.93042 0.85221 0.95544 0.93131 0.96107 0.90494 0.91591 0.89467 0.95904 0.94852 0.88141 0.88126 0.94344 0.92070 0.89403 0.95546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.53 8.94 71.98 0.64 -6.89 16 2 C 0.22 11.22 2.57 44.17 0.11 11.34 16 3 H 0.00 -0.06 7.72 -2.39 -0.02 -0.08 16 4 C -0.51 -28.76 8.84 25.60 0.23 -28.54 16 5 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.43 5.30 84.65 0.45 0.88 16 7 N -0.92 -53.86 11.32 21.45 0.24 -53.61 16 8 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 12 N -0.68 -29.07 5.64 -495.43 -2.79 -31.86 16 13 C 0.08 2.83 4.69 86.30 0.41 3.23 16 14 C 0.11 3.35 2.21 44.92 0.10 3.44 16 15 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 16 C 0.08 2.58 4.76 86.31 0.41 2.99 16 17 N -0.56 -14.57 4.97 -921.93 -4.58 -19.15 16 18 C 0.03 0.59 9.60 127.69 1.23 1.82 16 19 C 0.05 1.18 5.62 86.31 0.49 1.67 16 20 C 0.06 1.27 5.61 86.31 0.48 1.75 16 21 N -0.55 -14.83 4.78 -896.54 -4.29 -19.12 16 22 C 0.02 0.57 8.98 127.69 1.15 1.71 16 23 H 0.02 1.01 7.55 -2.38 -0.02 0.99 16 24 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 25 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 26 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.33 13.39 8.53 -89.69 -0.76 12.62 16 28 H 0.03 0.96 5.72 -2.39 -0.01 0.95 16 29 H 0.05 2.07 7.93 -2.38 -0.02 2.05 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 2.74 7.77 -2.38 -0.02 2.72 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.48 8.13 -2.39 -0.02 1.46 16 34 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 1.65 8.13 -2.38 -0.02 1.63 16 37 H 0.10 1.67 8.07 -2.38 -0.02 1.65 16 38 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.06 1.57 6.55 -2.39 -0.02 1.55 16 40 H 0.09 1.60 8.02 -2.38 -0.02 1.58 16 41 H 0.03 0.60 8.12 -2.39 -0.02 0.58 16 Total: -1.00 -60.91 316.10 -3.49 -64.40 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.21 Total: 19.54 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 5.69 Total: -6.60 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -11.42 Total: -123.75 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.91 -3.49 -64.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082669076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.243 kcal (2) G-P(sol) polarization free energy of solvation -60.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds