Wall clock time and date at job start Mon Mar 30 2020 04:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46905 * 2 1 4 4 C 1.50701 * 109.47130 * 239.99878 * 2 1 3 5 5 H 1.07997 * 119.99841 * 239.99428 * 4 2 1 6 6 C 1.37875 * 119.99676 * 59.99997 * 4 2 1 7 7 N 1.31513 * 120.00630 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99451 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46777 * 90.00216 * 8 6 4 10 10 H 1.48499 * 109.46788 * 209.99768 * 8 6 4 11 11 H 1.48499 * 109.47122 * 329.99934 * 8 6 4 12 12 N 1.46897 * 109.46994 * 119.99673 * 2 1 3 13 13 C 1.46897 * 111.00041 * 274.99791 * 12 2 1 14 14 C 1.52999 * 109.47106 * 174.90995 * 13 12 2 15 15 H 1.08999 * 109.49117 * 56.22627 * 14 13 12 16 16 C 1.53050 * 109.49346 * 296.18362 * 14 13 12 17 17 N 1.46956 * 109.36896 * 181.63143 * 16 14 13 18 18 C 1.46897 * 111.00169 * 183.19095 * 17 16 14 19 19 C 1.46952 * 110.87963 * 59.31804 * 17 16 14 20 20 C 1.53055 * 109.36706 * 300.67997 * 19 17 16 21 21 N 1.46958 * 109.36084 * 58.40314 * 20 19 17 22 22 C 1.46905 * 111.00000 * 176.81360 * 21 20 19 23 23 H 1.09006 * 109.46905 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47609 * 300.00230 * 1 2 3 25 25 H 1.09001 * 109.47593 * 60.00155 * 1 2 3 26 26 H 0.96999 * 120.00289 * 180.02562 * 7 6 4 27 27 H 1.00903 * 110.99538 * 151.04860 * 12 2 1 28 28 H 1.08993 * 109.47686 * 294.91470 * 13 12 2 29 29 H 1.09005 * 109.46882 * 54.91936 * 13 12 2 30 30 H 1.08999 * 109.48509 * 301.59795 * 16 14 13 31 31 H 1.08995 * 109.48616 * 61.63808 * 16 14 13 32 32 H 1.08999 * 109.47293 * 59.99512 * 18 17 16 33 33 H 1.09003 * 109.47199 * 180.02562 * 18 17 16 34 34 H 1.08999 * 109.46890 * 299.99558 * 18 17 16 35 35 H 1.09001 * 109.48815 * 60.65131 * 19 17 16 36 36 H 1.09004 * 109.48777 * 180.69654 * 19 17 16 37 37 H 1.09000 * 109.49056 * 178.36670 * 20 19 17 38 38 H 1.09001 * 109.49154 * 298.41782 * 20 19 17 39 39 H 1.08996 * 109.47300 * 190.22628 * 22 21 20 40 40 H 1.09004 * 109.46779 * 310.22211 * 22 21 20 41 41 H 1.08994 * 109.47278 * 70.22054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3468 14 6 2.4734 -0.5595 3.6023 15 1 3.4169 -1.0771 3.4291 16 6 1.3822 -1.5823 3.9273 17 7 1.7418 -2.3050 5.1553 18 6 0.7547 -3.3495 5.4596 19 6 1.8914 -1.3766 6.2846 20 6 2.9827 -0.3539 5.9597 21 7 2.6231 0.3688 4.7316 22 6 3.6102 1.4133 4.4272 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 0.7089 1.1613 -3.4844 27 1 2.9173 -1.1204 1.0287 28 1 2.8258 0.9962 2.1545 29 1 1.1069 0.6855 2.4963 30 1 0.4329 -1.0670 4.0733 31 1 1.2893 -2.2892 3.1029 32 1 0.7126 -4.0610 4.6349 33 1 1.0448 -3.8684 6.3733 34 1 -0.2259 -2.8938 5.5967 35 1 0.9478 -0.8591 6.4574 36 1 2.1697 -1.9340 7.1791 37 1 3.0754 0.3533 6.7839 38 1 3.9322 -0.8690 5.8139 39 1 3.2323 2.0480 3.6258 40 1 3.7858 2.0178 5.3172 41 1 4.5451 0.9493 4.1130 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082669077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:30 Heat of formation + Delta-G solvation = -7.224289 kcal Electronic energy + Delta-G solvation = -18275.431736 eV Core-core repulsion = 15610.304393 eV Total energy + Delta-G solvation = -2665.127343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54953 -37.74078 -36.42111 -34.67736 -32.48553 -30.35656 -29.65848 -27.40534 -26.34071 -26.09305 -24.07517 -22.48803 -21.66234 -20.70237 -18.51598 -17.12719 -16.75011 -16.71980 -16.24440 -15.77963 -15.66577 -15.44950 -14.89766 -14.74461 -14.54661 -13.81105 -13.61901 -13.36323 -13.17643 -13.05615 -12.86275 -12.68796 -12.61810 -12.41801 -12.27348 -12.21928 -12.12293 -11.88871 -11.60213 -11.45067 -10.88462 -10.56886 -9.42453 -9.26851 -9.04054 -8.13145 -6.27499 1.42993 1.43931 1.54086 2.41539 2.83174 2.98632 3.15723 3.67212 3.93701 4.00665 4.07703 4.20952 4.36414 4.40794 4.53867 4.56784 4.59171 4.68691 4.71397 4.78702 4.82849 4.90878 4.93106 5.01592 5.02566 5.07421 5.09642 5.16488 5.22677 5.46207 5.66448 5.83731 5.96677 5.98254 6.16545 6.20537 6.21445 6.45279 6.75469 6.98636 7.43053 8.92724 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032971 B = 0.005274 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.017977 B = 5307.985775 C = 5673.992257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.219 3.781 3 H -0.033 1.033 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.680 5.680 13 C 0.076 3.924 14 C 0.106 3.894 15 H 0.037 0.963 16 C 0.082 3.918 17 N -0.558 5.558 18 C 0.027 3.973 19 C 0.055 3.945 20 C 0.058 3.942 21 N -0.552 5.552 22 C 0.024 3.976 23 H 0.028 0.972 24 H 0.018 0.982 25 H 0.056 0.944 26 H 0.263 0.737 27 H 0.332 0.668 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.024 0.976 35 H 0.035 0.965 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.037 0.963 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -3.343 17.224 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 H -0.015 1.015 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.311 5.311 13 C -0.055 4.055 14 C -0.003 4.003 15 H 0.055 0.945 16 C -0.046 4.046 17 N -0.283 5.283 18 C -0.121 4.121 19 C -0.073 4.073 20 C -0.069 4.069 21 N -0.278 5.278 22 C -0.124 4.124 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.506 -3.473 17.273 17.797 hybrid contribution 0.803 0.457 -1.400 1.677 sum 3.309 -3.016 15.874 16.493 Atomic orbital electron populations 1.21522 0.97759 0.98827 0.98817 1.18871 0.92658 0.90655 0.86779 1.01536 1.21577 1.31726 1.12701 0.91528 0.92160 1.25740 0.95158 0.95636 1.02072 1.70028 1.37519 1.24052 1.24182 0.85473 0.78869 0.78167 0.78590 1.20108 1.20930 1.19169 1.60544 1.32111 1.33216 1.05219 1.21848 0.99667 0.93660 0.90304 1.21417 0.97476 0.91768 0.89641 0.94497 1.21903 0.95299 0.95012 0.92379 1.62196 1.48037 1.14299 1.03789 1.22366 0.92685 0.94353 1.02656 1.22254 0.97957 0.93243 0.93798 1.22247 0.96773 0.95721 0.92191 1.62126 1.48004 1.13960 1.03708 1.22410 0.92792 0.94667 1.02491 0.95243 0.96323 0.92493 0.92832 0.85137 0.96187 0.92556 0.95826 0.90410 0.91534 0.89545 0.95778 0.94714 0.88157 0.88110 0.94461 0.92181 0.89310 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.68 9.19 71.98 0.66 -5.02 16 2 C 0.22 11.38 2.60 44.17 0.11 11.50 16 3 H -0.03 -1.90 7.86 -2.38 -0.02 -1.92 16 4 C -0.54 -29.77 8.59 25.60 0.22 -29.55 16 5 H 0.06 3.26 7.62 -2.91 -0.02 3.24 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 8 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 N -0.68 -29.38 5.71 -495.46 -2.83 -32.21 16 13 C 0.08 2.84 4.64 86.30 0.40 3.25 16 14 C 0.11 3.35 2.21 44.92 0.10 3.45 16 15 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 16 C 0.08 2.56 4.76 86.31 0.41 2.97 16 17 N -0.56 -14.34 4.97 -921.96 -4.58 -18.92 16 18 C 0.03 0.57 9.60 127.69 1.23 1.80 16 19 C 0.06 1.18 5.62 86.31 0.49 1.66 16 20 C 0.06 1.26 5.61 86.31 0.48 1.74 16 21 N -0.55 -14.93 4.78 -896.52 -4.29 -19.22 16 22 C 0.02 0.58 8.98 127.69 1.15 1.73 16 23 H 0.03 1.46 8.14 -2.38 -0.02 1.45 16 24 H 0.02 0.85 7.39 -2.39 -0.02 0.83 16 25 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 26 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 27 H 0.33 14.08 8.28 -89.69 -0.74 13.34 16 28 H 0.02 0.77 6.29 -2.39 -0.02 0.75 16 29 H 0.06 2.27 7.33 -2.38 -0.02 2.25 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 2.68 7.77 -2.39 -0.02 2.66 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.42 8.13 -2.39 -0.02 1.40 16 34 H 0.02 0.50 8.14 -2.39 -0.02 0.49 16 35 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 1.63 8.13 -2.38 -0.02 1.61 16 37 H 0.10 1.68 8.07 -2.39 -0.02 1.67 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 1.61 6.55 -2.39 -0.02 1.59 16 40 H 0.09 1.67 8.02 -2.39 -0.02 1.65 16 41 H 0.02 0.59 8.12 -2.39 -0.02 0.57 16 Total: -1.00 -60.60 315.67 -3.49 -64.10 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.24 Total: 19.03 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 5.70 Total: -5.29 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -11.45 Total: -123.52 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -60.60 -3.49 -64.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082669077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.872 kcal (2) G-P(sol) polarization free energy of solvation -60.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds