Wall clock time and date at job start Mon Mar 30 2020 05:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34899 * 116.99911 * 2 1 4 4 O 1.21620 * 120.00172 * 0.02562 * 3 2 1 5 5 C 1.46469 * 119.99674 * 180.02562 * 3 2 1 6 6 C 1.36648 * 125.99261 * 180.02562 * 5 3 2 7 7 C 1.40311 * 106.70152 * 179.97438 * 6 5 3 8 8 C 1.35171 * 107.12360 * 359.97438 * 7 6 5 9 9 C 1.50706 * 125.60576 * 180.02562 * 8 7 6 10 10 S 1.81003 * 109.46853 * 90.00360 * 9 8 7 11 11 C 1.76196 * 99.99846 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00030 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99637 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00513 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99570 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46946 * 90.00549 * 15 13 11 17 17 H 1.48504 * 109.46826 * 210.00017 * 15 13 11 18 18 H 1.48496 * 109.47486 * 329.99998 * 15 13 11 19 19 O 1.33912 * 108.78687 * 0.27178 * 8 7 6 20 20 H 1.09008 * 109.46564 * 299.99805 * 1 2 3 21 21 H 1.09000 * 109.47217 * 59.99673 * 1 2 3 22 22 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 23 23 H 1.07997 * 126.64942 * 359.97438 * 6 5 3 24 24 H 1.07994 * 126.43958 * 180.02562 * 7 6 5 25 25 H 1.09000 * 109.47318 * 209.99913 * 9 8 7 26 26 H 1.09000 * 109.47161 * 330.00544 * 9 8 7 27 27 H 0.96995 * 120.00407 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5271 1.2786 -0.0006 6 6 4.2713 2.4247 -0.0001 7 6 5.6180 2.0310 -0.0004 8 6 5.6376 0.6794 -0.0003 9 6 6.8755 -0.1801 0.0000 10 16 7.3705 -0.5243 1.7067 11 6 8.7976 -1.5162 1.4172 12 1 9.1086 -1.7328 0.4059 13 6 9.5216 -2.0200 2.4890 14 7 9.1417 -1.7573 3.7216 15 14 11.0343 -3.0722 2.1820 16 1 12.2347 -2.2017 2.1011 17 1 11.1987 -4.0397 3.2966 18 1 10.8720 -3.8118 0.9046 19 8 4.3762 0.2298 -0.0061 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.8956 3.4372 0.0003 24 1 6.4774 2.6849 0.0003 25 1 6.6665 -1.1184 -0.5138 26 1 7.6817 0.3437 -0.5135 27 1 9.6478 -2.1091 4.4705 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082692464.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:52 Heat of formation + Delta-G solvation = -75.550670 kcal Electronic energy + Delta-G solvation = -14274.453794 eV Core-core repulsion = 11511.605771 eV Total energy + Delta-G solvation = -2762.848023 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.53896 -40.17504 -36.57327 -33.09672 -32.55733 -31.81747 -28.58686 -26.70747 -25.55071 -22.78921 -21.48644 -20.32726 -18.42229 -17.75324 -17.04045 -16.76766 -15.81184 -15.21053 -14.90108 -14.19515 -14.02379 -13.38832 -13.23894 -13.03210 -12.84339 -12.77760 -12.27876 -11.92116 -11.12296 -11.11187 -10.94813 -10.94112 -10.88682 -10.12065 -9.86107 -9.17387 -8.69093 -8.16594 -6.70727 -6.34319 -4.08196 0.90581 2.25816 2.36747 2.94910 3.07261 3.16624 3.19931 3.24849 3.50618 4.08809 4.67581 4.95059 4.98777 5.01167 5.03435 5.04197 5.31266 5.36461 5.63869 5.69010 5.88878 5.98683 6.14609 6.18387 6.49852 7.05839 7.49469 7.62986 8.24309 9.11647 10.73589 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.047228 B = 0.004657 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.723007 B = 6010.953125 C = 6283.455285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.347 6.347 3 C 0.559 3.441 4 O -0.498 6.498 5 C -0.091 4.091 6 C -0.092 4.092 7 C -0.226 4.226 8 C 0.089 3.911 9 C -0.059 4.059 10 S -0.096 6.096 11 C -0.526 4.526 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.923 3.077 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.271 1.271 19 O -0.145 6.145 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.104 0.896 23 H 0.162 0.838 24 H 0.162 0.838 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 4.545 -7.789 14.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.263 6.263 3 C 0.405 3.595 4 O -0.388 6.388 5 C -0.142 4.142 6 C -0.112 4.112 7 C -0.247 4.247 8 C 0.034 3.966 9 C -0.206 4.206 10 S 0.133 5.867 11 C -0.674 4.674 12 H 0.096 0.904 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.749 3.251 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.195 1.195 19 O -0.040 6.040 20 H 0.084 0.916 21 H 0.083 0.917 22 H 0.122 0.878 23 H 0.180 0.820 24 H 0.180 0.820 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.658 4.780 -6.607 14.227 hybrid contribution 1.334 -0.847 -1.177 1.971 sum -10.324 3.933 -7.784 13.515 Atomic orbital electron populations 1.23330 0.75726 1.04008 1.02642 1.86706 1.23683 1.31914 1.84034 1.19189 0.85591 0.81926 0.72814 1.90911 1.64562 1.35912 1.47424 1.20476 0.87687 0.86485 1.19550 1.21919 0.92438 0.98434 0.98371 1.21567 0.97527 0.94233 1.11410 1.22583 0.83190 0.93827 0.96968 1.22084 0.91500 1.00473 1.06538 1.85154 1.36038 1.67466 0.98037 1.22725 1.12121 1.36833 0.95739 0.90410 1.25031 0.98099 0.96080 0.94390 1.70002 1.39061 1.43067 0.98122 0.86096 0.81288 0.79527 0.78207 1.20135 1.20677 1.19541 1.84118 1.15364 1.34406 1.70108 0.91622 0.91733 0.87773 0.82049 0.82015 0.89339 0.87976 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 15 2 O -0.35 -4.96 10.58 -42.48 -0.45 -5.41 15 3 C 0.56 8.73 7.93 34.05 0.27 9.00 15 4 O -0.50 -8.09 16.66 -19.36 -0.32 -8.41 15 5 C -0.09 -1.51 7.18 -36.84 -0.26 -1.78 15 6 C -0.09 -1.36 10.62 -39.38 -0.42 -1.78 15 7 C -0.23 -3.52 10.77 -39.89 -0.43 -3.95 15 8 C 0.09 1.59 6.57 -35.40 -0.23 1.36 15 9 C -0.06 -1.15 6.20 36.01 0.22 -0.92 15 10 S -0.10 -2.42 21.42 -107.50 -2.30 -4.72 15 11 C -0.53 -14.34 9.50 30.94 0.29 -14.05 15 12 H 0.08 2.01 7.80 -52.49 -0.41 1.60 15 13 C 0.07 2.02 5.49 -17.43 -0.10 1.92 15 14 N -0.87 -25.17 13.22 55.49 0.73 -24.44 15 15 Si 0.92 20.74 29.55 -169.99 -5.02 15.72 15 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 19 O -0.14 -2.66 10.67 4.74 0.05 -2.61 15 20 H 0.07 0.59 8.14 -51.92 -0.42 0.17 15 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.10 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.16 1.97 8.06 -52.49 -0.42 1.55 15 24 H 0.16 2.16 8.06 -52.49 -0.42 1.74 15 25 H 0.09 1.67 8.14 -51.92 -0.42 1.24 15 26 H 0.10 1.79 8.14 -51.92 -0.42 1.37 15 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 LS Contribution 271.19 15.07 4.09 4.09 Total: -1.00 -31.26 271.19 -5.32 -36.57 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -2.50 Total: -2.01 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 0.41 Total: -8.78 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.73 Total: -24.44 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.72 Total: -16.43 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.30 Total: -4.72 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.26 -5.32 -36.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692464.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.976 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds