Wall clock time and date at job start Mon Mar 30 2020 05:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34899 * 116.99911 * 2 1 4 4 O 1.21620 * 120.00172 * 0.02562 * 3 2 1 5 5 C 1.46469 * 119.99674 * 180.02562 * 3 2 1 6 6 C 1.36648 * 125.99261 * 180.02562 * 5 3 2 7 7 C 1.40311 * 106.70152 * 179.97438 * 6 5 3 8 8 C 1.35171 * 107.12360 * 359.97438 * 7 6 5 9 9 C 1.50706 * 125.60576 * 180.02562 * 8 7 6 10 10 S 1.81003 * 109.46853 * 90.00360 * 9 8 7 11 11 C 1.76196 * 99.99846 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00030 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99637 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00513 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99570 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46946 * 90.00549 * 15 13 11 17 17 H 1.48504 * 109.46826 * 210.00017 * 15 13 11 18 18 H 1.48496 * 109.47486 * 329.99998 * 15 13 11 19 19 O 1.33912 * 108.78687 * 0.27178 * 8 7 6 20 20 H 1.09008 * 109.46564 * 299.99805 * 1 2 3 21 21 H 1.09000 * 109.47217 * 59.99673 * 1 2 3 22 22 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 23 23 H 1.07997 * 126.64942 * 359.97438 * 6 5 3 24 24 H 1.07994 * 126.43958 * 180.02562 * 7 6 5 25 25 H 1.09000 * 109.47318 * 209.99913 * 9 8 7 26 26 H 1.09000 * 109.47161 * 330.00544 * 9 8 7 27 27 H 0.96995 * 120.00407 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5271 1.2786 -0.0006 6 6 4.2713 2.4247 -0.0001 7 6 5.6180 2.0310 -0.0004 8 6 5.6376 0.6794 -0.0003 9 6 6.8755 -0.1801 0.0000 10 16 7.3705 -0.5243 1.7067 11 6 8.7976 -1.5162 1.4172 12 1 9.1086 -1.7328 0.4059 13 6 9.5216 -2.0200 2.4890 14 7 9.1417 -1.7573 3.7216 15 14 11.0343 -3.0722 2.1820 16 1 12.2347 -2.2017 2.1011 17 1 11.1987 -4.0397 3.2966 18 1 10.8720 -3.8118 0.9046 19 8 4.3762 0.2298 -0.0061 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.8956 3.4372 0.0003 24 1 6.4774 2.6849 0.0003 25 1 6.6665 -1.1184 -0.5138 26 1 7.6817 0.3437 -0.5135 27 1 9.6478 -2.1091 4.4705 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082692464.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:52 Heat of formation + Delta-G solvation = -94.494025 kcal Electronic energy + Delta-G solvation = -14275.275239 eV Core-core repulsion = 11511.605771 eV Total energy + Delta-G solvation = -2763.669469 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.83531 -41.31977 -37.70360 -34.63214 -34.38929 -33.17508 -29.69185 -28.03220 -27.41931 -23.99449 -22.79495 -21.57352 -19.88650 -19.44243 -18.18336 -17.98824 -17.06912 -16.90093 -16.60298 -15.89524 -15.11769 -14.84314 -14.57188 -14.30655 -14.20058 -14.02498 -13.45198 -13.13791 -13.06778 -12.89501 -12.68115 -12.08800 -11.91948 -11.87414 -11.16215 -11.12280 -10.55669 -9.59062 -8.73645 -8.38811 -6.17568 -0.37470 0.89355 1.21733 1.38219 1.42634 1.53405 1.71125 1.85062 1.95234 2.24514 2.97001 3.20622 3.51292 3.79616 3.83055 4.20812 4.24092 4.32006 4.43202 4.50958 4.67163 4.73812 4.84124 5.06223 5.28148 5.40935 5.77582 6.17634 6.46679 7.03862 8.70451 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.047228 B = 0.004657 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.723007 B = 6010.953125 C = 6283.455285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.560 3.440 4 O -0.507 6.507 5 C -0.104 4.104 6 C -0.084 4.084 7 C -0.207 4.207 8 C 0.058 3.942 9 C -0.033 4.033 10 S -0.167 6.167 11 C -0.540 4.540 12 H 0.084 0.916 13 C 0.017 3.983 14 N -0.909 5.909 15 Si 0.997 3.003 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.260 1.260 19 O -0.165 6.165 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.133 0.867 23 H 0.191 0.809 24 H 0.186 0.814 25 H 0.089 0.911 26 H 0.123 0.877 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 4.875 -8.927 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.407 3.593 4 O -0.398 6.398 5 C -0.154 4.154 6 C -0.103 4.103 7 C -0.228 4.228 8 C 0.004 3.996 9 C -0.180 4.180 10 S 0.063 5.937 11 C -0.687 4.687 12 H 0.103 0.897 13 C -0.189 4.189 14 N -0.545 5.545 15 Si 0.819 3.181 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.185 1.185 19 O -0.061 6.061 20 H 0.088 0.912 21 H 0.093 0.907 22 H 0.151 0.849 23 H 0.208 0.792 24 H 0.203 0.797 25 H 0.108 0.892 26 H 0.141 0.859 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.654 5.106 -7.754 14.900 hybrid contribution 1.148 -0.891 -0.884 1.701 sum -10.506 4.215 -8.638 14.240 Atomic orbital electron populations 1.23724 0.73163 1.06254 1.03380 1.86690 1.26281 1.31244 1.83550 1.19115 0.85344 0.82245 0.72622 1.90898 1.64659 1.36223 1.48054 1.20943 0.88286 0.86728 1.19471 1.22289 0.91819 0.99285 0.96916 1.21914 0.98701 0.93441 1.08794 1.22431 0.82749 0.94513 0.99921 1.21852 0.92922 1.01286 1.01908 1.85164 1.36329 1.67724 1.04465 1.23099 1.12514 1.36907 0.96218 0.89745 1.26085 1.01422 0.97337 0.94016 1.70144 1.40697 1.44496 0.99167 0.84968 0.77110 0.77666 0.78370 1.19120 1.20356 1.18451 1.84075 1.15768 1.35503 1.70786 0.91162 0.90736 0.84887 0.79200 0.79664 0.89223 0.85940 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 15 2 O -0.36 -9.97 10.58 -56.76 -0.60 -10.57 15 3 C 0.56 16.94 7.93 69.97 0.55 17.49 15 4 O -0.51 -15.74 16.66 19.44 0.32 -15.42 15 5 C -0.10 -3.33 7.18 24.04 0.17 -3.16 15 6 C -0.08 -2.31 10.62 22.40 0.24 -2.07 15 7 C -0.21 -6.03 10.77 22.07 0.24 -5.79 15 8 C 0.06 2.02 6.57 24.98 0.16 2.18 15 9 C -0.03 -1.24 6.20 71.24 0.44 -0.80 15 10 S -0.17 -8.55 21.42 -56.49 -1.21 -9.76 15 11 C -0.54 -29.53 9.50 67.96 0.65 -28.89 15 12 H 0.08 4.33 7.80 -2.91 -0.02 4.31 15 13 C 0.02 0.91 5.49 84.86 0.47 1.37 15 14 N -0.91 -53.52 13.22 21.65 0.29 -53.24 15 15 Si 1.00 42.24 29.55 68.60 2.03 44.27 15 16 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 17 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 18 H -0.26 -10.48 7.11 99.48 0.71 -9.78 15 19 O -0.16 -6.02 10.67 -4.87 -0.05 -6.07 15 20 H 0.07 1.16 8.14 -2.38 -0.02 1.14 15 21 H 0.07 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.13 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.19 4.04 8.06 -2.91 -0.02 4.02 15 24 H 0.19 4.41 8.06 -2.91 -0.02 4.38 15 25 H 0.09 3.36 8.14 -2.40 -0.02 3.34 15 26 H 0.12 4.13 8.14 -2.39 -0.02 4.11 15 27 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 Total: -1.00 -67.51 271.19 6.08 -61.43 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 1.18 Total: 7.34 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.12 Total: -17.99 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.29 Total: -53.24 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.33 Total: -32.06 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.21 Total: -9.76 kcal Total: -67.51 6.08 -61.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692464.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.062 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds