Wall clock time and date at job start Mon Mar 30 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46896 * 109.47419 * 2 1 4 4 C 1.46898 * 110.99924 * 71.25213 * 3 2 1 5 5 C 1.50694 * 109.47375 * 64.19152 * 4 3 2 6 6 H 1.08004 * 119.99854 * 2.71695 * 5 4 3 7 7 C 1.37882 * 120.00061 * 182.71963 * 5 4 3 8 8 N 1.31507 * 120.00020 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99827 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47409 * 59.99584 * 9 7 5 11 11 H 1.48502 * 109.47115 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47034 * 299.99644 * 9 7 5 13 13 C 1.46905 * 111.00212 * 195.20631 * 3 2 1 14 14 H 1.09005 * 108.84929 * 291.32281 * 13 3 2 15 15 C 1.50471 * 108.87939 * 172.76312 * 13 3 2 16 16 C 1.54243 * 108.52812 * 145.07415 * 15 13 3 17 17 C 1.45541 * 112.40005 * 79.98046 * 16 15 13 18 18 C 1.54237 * 112.40907 * 298.05896 * 17 16 15 19 19 C 1.50469 * 108.51412 * 80.00060 * 18 17 16 20 20 C 1.53852 * 108.91185 * 49.77618 * 13 3 2 21 21 H 1.09001 * 108.79568 * 283.39595 * 20 13 3 22 22 O 1.42899 * 108.70610 * 41.60955 * 20 13 3 23 23 H 1.08994 * 109.47583 * 173.95131 * 1 2 3 24 24 H 1.09001 * 109.47445 * 293.95544 * 1 2 3 25 25 H 1.09001 * 109.47212 * 53.95215 * 1 2 3 26 26 H 1.09002 * 109.46990 * 239.99926 * 2 1 3 27 27 H 1.09005 * 109.47101 * 120.00459 * 2 1 3 28 28 H 1.09002 * 109.47166 * 184.19340 * 4 3 2 29 29 H 1.09005 * 109.47317 * 304.18905 * 4 3 2 30 30 H 0.96997 * 120.00021 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.62523 * 25.36351 * 15 13 3 32 32 H 1.08998 * 109.78845 * 264.88560 * 15 13 3 33 33 H 1.09004 * 108.89527 * 319.22343 * 16 15 13 34 34 H 1.09001 * 108.89408 * 200.73042 * 16 15 13 35 35 H 1.09001 * 108.89142 * 177.30611 * 17 16 15 36 36 H 1.09001 * 108.89412 * 58.81354 * 17 16 15 37 37 H 1.09000 * 109.63046 * 320.29681 * 18 17 16 38 38 H 1.08999 * 109.79389 * 199.80446 * 18 17 16 39 39 H 1.09003 * 108.87704 * 26.62252 * 19 18 17 40 40 H 1.08999 * 108.88077 * 145.16738 * 19 18 17 41 41 H 0.96694 * 113.99455 * 183.36780 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7796 2.0282 1.2987 5 6 2.5797 1.3237 2.3638 6 1 3.2377 0.5104 2.0955 7 6 2.4716 1.7174 3.6807 8 7 1.6707 2.7080 4.0073 9 14 3.4640 0.8446 5.0009 10 1 4.9123 0.9815 4.7032 11 1 3.1704 1.4521 6.3238 12 1 3.0976 -0.5944 5.0254 13 6 3.4429 1.4401 -0.3597 14 1 4.0273 0.9959 0.4461 15 6 3.8493 2.8801 -0.5192 16 6 5.3026 3.0367 -0.0266 17 6 6.2745 2.6045 -1.0199 18 6 6.1336 1.1087 -1.3686 19 6 4.9976 0.9501 -2.3425 20 6 3.6652 0.6204 -1.6426 21 1 3.6546 -0.4395 -1.3883 22 8 2.5913 0.8852 -2.5474 23 1 -0.3634 -1.0219 -0.1083 24 1 -0.3634 0.4173 0.9391 25 1 -0.3634 0.6047 -0.8309 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0834 3.0738 1.2479 29 1 0.7188 1.9695 1.5426 30 1 1.5944 2.9847 4.9338 31 1 3.1910 3.5142 0.0746 32 1 3.7855 3.1674 -1.5687 33 1 5.4345 2.4431 0.8781 34 1 5.4835 4.0848 0.2116 35 1 7.2778 2.7838 -0.6333 36 1 6.1374 3.1929 -1.9272 37 1 5.9217 0.5400 -0.4631 38 1 7.0568 0.7465 -1.8208 39 1 4.8814 1.8778 -2.9029 40 1 5.2388 0.1463 -3.0379 41 1 2.6278 0.3673 -3.3632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084082482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:15 Heat of formation + Delta-G solvation = -54.992839 kcal Electronic energy + Delta-G solvation = -19283.841207 eV Core-core repulsion = 16584.349713 eV Total energy + Delta-G solvation = -2699.491494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.40392 -36.06049 -35.58337 -32.43890 -31.49957 -30.55013 -28.54067 -26.21764 -24.39013 -23.47729 -22.21847 -20.29432 -19.95631 -18.56860 -16.67425 -16.17691 -15.93999 -15.06380 -14.50365 -14.03116 -13.84319 -13.63694 -13.15619 -12.84408 -12.60718 -12.51360 -12.03342 -11.86522 -11.58702 -11.19640 -11.14156 -10.93730 -10.75429 -10.63648 -10.31032 -10.19804 -10.03650 -10.00440 -9.91874 -9.78445 -9.64729 -9.33106 -9.13376 -8.34809 -6.92410 -5.95828 -4.05085 3.29214 3.34729 3.36489 4.43370 4.64801 4.86129 4.99837 5.11809 5.28413 5.32716 5.49619 5.56807 5.64360 5.81660 5.85401 5.98290 6.03717 6.10666 6.28109 6.30865 6.32457 6.41462 6.44194 6.48670 6.54765 6.70634 6.73482 6.79587 6.99086 7.02490 7.05444 7.14819 7.42846 7.63430 7.99232 8.06857 8.24883 8.40598 8.53584 9.06230 9.60403 11.07599 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.009698 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.874001 B = 2886.420635 C = 3671.098929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 N -0.525 5.525 4 C 0.181 3.819 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.066 3.934 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.104 3.896 14 H 0.057 0.943 15 C -0.102 4.102 16 C -0.123 4.123 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.147 4.147 20 C 0.110 3.890 21 H 0.040 0.960 22 O -0.540 6.540 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.313 -3.518 -11.278 13.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.071 4.071 3 N -0.249 5.249 4 C 0.056 3.944 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.529 5.529 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 C -0.004 4.004 14 H 0.075 0.925 15 C -0.139 4.139 16 C -0.161 4.161 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.185 4.185 20 C 0.050 3.950 21 H 0.058 0.942 22 O -0.342 6.342 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.791 -2.718 -10.989 12.715 hybrid contribution 1.257 -1.385 1.139 2.190 sum 7.047 -4.103 -9.850 12.787 Atomic orbital electron populations 1.21653 0.96418 0.99389 1.01999 1.21890 0.95231 0.91055 0.98951 1.62525 1.14213 1.15603 1.32516 1.19849 0.97028 0.94688 0.82846 1.21675 1.25873 1.17732 0.92915 0.92896 1.24921 0.95271 0.94965 0.98462 1.69927 1.37333 1.27416 1.18226 0.86803 0.80742 0.79981 0.81363 1.20324 1.21249 1.20401 1.21233 0.91515 0.95226 0.92473 0.92521 1.21313 0.94959 0.96852 1.00806 1.20484 0.95441 1.01059 0.99080 1.20478 0.99054 0.95613 0.99659 1.21265 0.97320 0.97138 0.99675 1.22077 0.95724 1.01978 0.98727 1.22450 0.84971 0.97388 0.90177 0.94245 1.86842 1.48357 1.67603 1.31432 0.94294 0.92610 0.92857 0.92838 0.94753 0.94997 0.94811 0.92875 0.90135 0.92477 0.91631 0.92749 0.92994 0.92662 0.91433 0.92397 0.91091 0.92920 0.80012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.82 37.15 0.36 -2.25 16 2 C 0.06 1.17 5.01 -3.83 -0.02 1.15 16 3 N -0.52 -11.54 4.07 -229.07 -0.93 -12.48 16 4 C 0.18 4.69 4.71 -4.98 -0.02 4.67 16 5 C -0.54 -14.79 7.36 -34.44 -0.25 -15.04 16 6 H 0.05 1.44 5.91 -52.48 -0.31 1.13 16 7 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 8 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 9 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.10 2.03 1.11 -68.53 -0.08 1.96 16 14 H 0.06 1.23 4.69 -51.93 -0.24 0.99 16 15 C -0.10 -1.91 5.10 -27.34 -0.14 -2.05 16 16 C -0.12 -2.03 5.26 -29.60 -0.16 -2.19 16 17 C -0.11 -1.50 5.26 -29.60 -0.16 -1.66 16 18 C -0.12 -1.52 5.61 -27.35 -0.15 -1.67 16 19 C -0.15 -1.91 4.92 -27.44 -0.13 -2.04 16 20 C 0.11 1.73 2.20 -25.73 -0.06 1.68 16 21 H 0.04 0.62 7.00 -51.93 -0.36 0.26 16 22 O -0.54 -8.53 11.67 -35.23 -0.41 -8.94 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 1.17 6.91 -51.93 -0.36 0.82 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.99 5.10 -51.93 -0.26 0.73 16 27 H 0.03 0.78 6.54 -51.93 -0.34 0.44 16 28 H 0.03 0.88 6.01 -51.93 -0.31 0.57 16 29 H 0.03 0.95 6.64 -51.93 -0.34 0.61 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.08 1.74 5.61 -51.93 -0.29 1.45 16 32 H 0.06 1.02 7.00 -51.93 -0.36 0.66 16 33 H 0.07 1.21 7.47 -51.93 -0.39 0.83 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.71 7.47 -51.93 -0.39 0.32 16 37 H 0.07 0.98 6.97 -51.93 -0.36 0.62 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.94 6.63 -51.93 -0.34 0.60 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.36 3.93 9.07 45.56 0.41 4.34 16 LS Contribution 297.91 15.07 4.49 4.49 Total: -1.00 -29.59 297.91 -7.97 -37.56 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.93 Total: 4.07 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.90 Total: -15.68 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.20 Total: -37.93 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.41 Total: -8.94 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.59 -7.97 -37.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084082482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.428 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds