Wall clock time and date at job start Mon Mar 30 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46896 * 109.47419 * 2 1 4 4 C 1.46898 * 110.99924 * 71.25213 * 3 2 1 5 5 C 1.50694 * 109.47375 * 64.19152 * 4 3 2 6 6 H 1.08004 * 119.99854 * 2.71695 * 5 4 3 7 7 C 1.37882 * 120.00061 * 182.71963 * 5 4 3 8 8 N 1.31507 * 120.00020 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99827 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47409 * 59.99584 * 9 7 5 11 11 H 1.48502 * 109.47115 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47034 * 299.99644 * 9 7 5 13 13 C 1.46905 * 111.00212 * 195.20631 * 3 2 1 14 14 H 1.09005 * 108.84929 * 291.32281 * 13 3 2 15 15 C 1.50471 * 108.87939 * 172.76312 * 13 3 2 16 16 C 1.54243 * 108.52812 * 145.07415 * 15 13 3 17 17 C 1.45541 * 112.40005 * 79.98046 * 16 15 13 18 18 C 1.54237 * 112.40907 * 298.05896 * 17 16 15 19 19 C 1.50469 * 108.51412 * 80.00060 * 18 17 16 20 20 C 1.53852 * 108.91185 * 49.77618 * 13 3 2 21 21 H 1.09001 * 108.79568 * 283.39595 * 20 13 3 22 22 O 1.42899 * 108.70610 * 41.60955 * 20 13 3 23 23 H 1.08994 * 109.47583 * 173.95131 * 1 2 3 24 24 H 1.09001 * 109.47445 * 293.95544 * 1 2 3 25 25 H 1.09001 * 109.47212 * 53.95215 * 1 2 3 26 26 H 1.09002 * 109.46990 * 239.99926 * 2 1 3 27 27 H 1.09005 * 109.47101 * 120.00459 * 2 1 3 28 28 H 1.09002 * 109.47166 * 184.19340 * 4 3 2 29 29 H 1.09005 * 109.47317 * 304.18905 * 4 3 2 30 30 H 0.96997 * 120.00021 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.62523 * 25.36351 * 15 13 3 32 32 H 1.08998 * 109.78845 * 264.88560 * 15 13 3 33 33 H 1.09004 * 108.89527 * 319.22343 * 16 15 13 34 34 H 1.09001 * 108.89408 * 200.73042 * 16 15 13 35 35 H 1.09001 * 108.89142 * 177.30611 * 17 16 15 36 36 H 1.09001 * 108.89412 * 58.81354 * 17 16 15 37 37 H 1.09000 * 109.63046 * 320.29681 * 18 17 16 38 38 H 1.08999 * 109.79389 * 199.80446 * 18 17 16 39 39 H 1.09003 * 108.87704 * 26.62252 * 19 18 17 40 40 H 1.08999 * 108.88077 * 145.16738 * 19 18 17 41 41 H 0.96694 * 113.99455 * 183.36780 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7796 2.0282 1.2987 5 6 2.5797 1.3237 2.3638 6 1 3.2377 0.5104 2.0955 7 6 2.4716 1.7174 3.6807 8 7 1.6707 2.7080 4.0073 9 14 3.4640 0.8446 5.0009 10 1 4.9123 0.9815 4.7032 11 1 3.1704 1.4521 6.3238 12 1 3.0976 -0.5944 5.0254 13 6 3.4429 1.4401 -0.3597 14 1 4.0273 0.9959 0.4461 15 6 3.8493 2.8801 -0.5192 16 6 5.3026 3.0367 -0.0266 17 6 6.2745 2.6045 -1.0199 18 6 6.1336 1.1087 -1.3686 19 6 4.9976 0.9501 -2.3425 20 6 3.6652 0.6204 -1.6426 21 1 3.6546 -0.4395 -1.3883 22 8 2.5913 0.8852 -2.5474 23 1 -0.3634 -1.0219 -0.1083 24 1 -0.3634 0.4173 0.9391 25 1 -0.3634 0.6047 -0.8309 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0834 3.0738 1.2479 29 1 0.7188 1.9695 1.5426 30 1 1.5944 2.9847 4.9338 31 1 3.1910 3.5142 0.0746 32 1 3.7855 3.1674 -1.5687 33 1 5.4345 2.4431 0.8781 34 1 5.4835 4.0848 0.2116 35 1 7.2778 2.7838 -0.6333 36 1 6.1374 3.1929 -1.9272 37 1 5.9217 0.5400 -0.4631 38 1 7.0568 0.7465 -1.8208 39 1 4.8814 1.8778 -2.9029 40 1 5.2388 0.1463 -3.0379 41 1 2.6278 0.3673 -3.3632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084082482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:15 Heat of formation + Delta-G solvation = -75.702486 kcal Electronic energy + Delta-G solvation = -19284.739245 eV Core-core repulsion = 16584.349713 eV Total energy + Delta-G solvation = -2700.389532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81719 -37.64283 -36.84335 -34.56368 -32.84468 -31.89915 -30.32264 -28.02067 -26.02884 -24.87867 -23.84100 -21.83867 -21.34419 -20.10660 -18.25795 -17.83682 -17.51190 -16.79401 -16.11273 -15.54054 -15.29230 -15.07440 -14.64155 -14.28676 -14.19508 -13.93203 -13.53228 -13.52449 -13.08416 -13.00020 -12.75637 -12.51539 -12.46873 -12.10623 -11.95208 -11.88706 -11.77752 -11.52597 -11.45857 -11.31095 -11.04414 -10.84181 -10.56035 -10.46777 -8.82475 -8.09016 -6.29967 1.34276 1.35483 1.43324 2.36972 3.11904 3.28607 3.58937 3.80112 3.92524 4.08681 4.23514 4.29684 4.39817 4.44912 4.50230 4.57801 4.66152 4.76358 4.86207 4.90119 5.07782 5.07880 5.15524 5.19785 5.24046 5.29696 5.32013 5.37716 5.38715 5.39751 5.47552 5.53717 5.59871 5.61473 5.84236 6.13035 6.38358 6.75243 6.92694 7.15829 7.40158 8.90133 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.009698 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.874001 B = 2886.420635 C = 3671.098929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.058 3.942 3 N -0.527 5.527 4 C 0.199 3.801 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.102 3.898 14 H 0.030 0.970 15 C -0.097 4.097 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.138 4.138 20 C 0.116 3.884 21 H 0.043 0.957 22 O -0.559 6.559 23 H 0.070 0.930 24 H 0.025 0.975 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.010 0.990 28 H 0.006 0.994 29 H 0.003 0.997 30 H 0.263 0.737 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.074 -5.006 -13.033 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.070 4.070 3 N -0.251 5.251 4 C 0.072 3.928 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.187 4.187 8 N -0.566 5.566 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.197 1.197 13 C -0.006 4.006 14 H 0.048 0.952 15 C -0.135 4.135 16 C -0.152 4.152 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.176 4.176 20 C 0.057 3.943 21 H 0.061 0.939 22 O -0.365 6.365 23 H 0.089 0.911 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.028 0.972 28 H 0.024 0.976 29 H 0.021 0.979 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 7.560 -4.225 -12.775 15.434 hybrid contribution 0.662 -0.904 1.626 1.975 sum 8.222 -5.130 -11.150 14.773 Atomic orbital electron populations 1.21595 0.95463 1.01198 1.00479 1.21964 0.96081 0.89970 0.99004 1.62490 1.16341 1.16466 1.29772 1.19444 0.94769 0.93706 0.84876 1.21861 1.25567 1.17433 0.93487 0.93011 1.25752 0.96364 0.95700 1.00838 1.70061 1.38902 1.28938 1.18740 0.85745 0.79444 0.78930 0.78435 1.19404 1.20779 1.19653 1.21304 0.89171 0.96010 0.94129 0.95194 1.21237 0.95699 0.95844 1.00701 1.20423 0.94922 1.00873 0.99007 1.20457 0.98612 0.96467 0.99200 1.21294 0.98756 0.96240 0.99109 1.22004 0.93632 1.03280 0.98702 1.22260 0.86783 0.96417 0.88847 0.93924 1.86768 1.48452 1.68529 1.32733 0.91141 0.95597 0.92471 0.90047 0.97221 0.97628 0.97938 0.92802 0.94083 0.91261 0.94370 0.92561 0.91384 0.91153 0.93406 0.89481 0.90885 0.89747 0.77181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.82 71.98 0.71 -4.23 16 2 C 0.06 2.37 5.01 86.30 0.43 2.80 16 3 N -0.53 -23.80 4.07 -878.65 -3.58 -27.37 16 4 C 0.20 10.86 4.71 85.56 0.40 11.26 16 5 C -0.54 -30.78 7.36 25.60 0.19 -30.60 16 6 H 0.05 2.89 5.91 -2.91 -0.02 2.88 16 7 C 0.01 0.72 5.46 84.66 0.46 1.18 16 8 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 9 Si 0.95 44.72 29.54 68.60 2.03 46.74 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 13 C 0.10 4.02 1.11 44.38 0.05 4.07 16 14 H 0.03 1.34 4.69 -2.38 -0.01 1.33 16 15 C -0.10 -3.71 5.10 30.20 0.15 -3.55 16 16 C -0.11 -3.79 5.26 28.74 0.15 -3.64 16 17 C -0.11 -2.73 5.26 28.74 0.15 -2.58 16 18 C -0.12 -2.68 5.61 30.19 0.17 -2.51 16 19 C -0.14 -3.08 4.92 30.14 0.15 -2.93 16 20 C 0.12 3.43 2.20 31.24 0.07 3.50 16 21 H 0.04 1.24 7.00 -2.39 -0.02 1.22 16 22 O -0.56 -16.14 11.67 -148.98 -1.74 -17.88 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.02 1.11 6.91 -2.39 -0.02 1.09 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 2.88 5.10 -2.39 -0.01 2.86 16 27 H 0.01 0.44 6.54 -2.38 -0.02 0.42 16 28 H 0.01 0.34 6.01 -2.39 -0.01 0.33 16 29 H 0.00 0.15 6.64 -2.38 -0.02 0.14 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.04 1.87 5.61 -2.38 -0.01 1.86 16 32 H 0.07 2.43 7.00 -2.39 -0.02 2.41 16 33 H 0.04 1.45 7.47 -2.38 -0.02 1.43 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.57 7.47 -2.39 -0.02 1.55 16 37 H 0.05 1.30 6.97 -2.39 -0.02 1.29 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.64 6.63 -2.39 -0.02 1.63 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.38 6.94 9.07 -74.06 -0.67 6.26 16 Total: -1.00 -66.33 297.91 0.43 -65.90 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.34 Total: 15.99 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 3.09 Total: -27.22 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -3.29 Total: -83.53 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -1.74 Total: -17.88 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.33 0.43 -65.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084082482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.804 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds