Wall clock time and date at job start Mon Mar 30 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.46969 * 2 1 4 4 C 1.46906 * 110.99591 * 194.77287 * 3 2 1 5 5 C 1.50701 * 109.47301 * 66.05064 * 4 3 2 6 6 H 1.08002 * 119.99644 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99960 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00170 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99637 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47260 * 269.99921 * 9 7 5 11 11 H 1.48495 * 109.47416 * 30.00187 * 9 7 5 12 12 H 1.48506 * 109.46889 * 150.00248 * 9 7 5 13 13 C 1.46898 * 111.00009 * 70.82313 * 3 2 1 14 14 H 1.08997 * 108.84867 * 309.15197 * 13 3 2 15 15 C 1.54067 * 108.88108 * 67.70995 * 13 3 2 16 16 C 1.53998 * 112.85475 * 162.59138 * 15 13 3 17 17 C 1.50472 * 112.54531 * 41.55947 * 16 15 13 18 18 C 1.54239 * 108.53179 * 265.92792 * 17 16 15 19 19 C 1.45541 * 112.40190 * 79.97950 * 18 17 16 20 20 C 1.50473 * 108.87683 * 190.59504 * 13 3 2 21 21 H 1.08998 * 109.62659 * 264.77089 * 20 13 3 22 22 O 1.42900 * 109.62851 * 25.15664 * 20 13 3 23 23 H 1.08999 * 109.47113 * 54.31289 * 1 2 3 24 24 H 1.08997 * 109.46992 * 174.30726 * 1 2 3 25 25 H 1.09003 * 109.46859 * 294.30539 * 1 2 3 26 26 H 1.09000 * 109.47165 * 240.00089 * 2 1 3 27 27 H 1.08997 * 109.47293 * 120.00106 * 2 1 3 28 28 H 1.08998 * 109.47489 * 306.04218 * 4 3 2 29 29 H 1.09006 * 109.46776 * 186.04840 * 4 3 2 30 30 H 0.96994 * 120.00123 * 180.02562 * 8 7 5 31 31 H 1.09001 * 108.80916 * 283.36012 * 15 13 3 32 32 H 1.09005 * 108.81117 * 41.63313 * 15 13 3 33 33 H 1.09002 * 108.79205 * 280.81097 * 16 15 13 34 34 H 1.08995 * 108.83045 * 162.34108 * 16 15 13 35 35 H 1.09004 * 109.62163 * 146.21926 * 17 16 15 36 36 H 1.08999 * 109.79295 * 25.74179 * 17 16 15 37 37 H 1.09008 * 108.89215 * 319.23009 * 18 17 16 38 38 H 1.08998 * 108.89950 * 200.73801 * 18 17 16 39 39 H 1.08996 * 108.89812 * 177.31374 * 19 18 17 40 40 H 1.09003 * 108.81390 * 58.76597 * 19 18 17 41 41 H 0.96705 * 113.99576 * 177.25098 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4454 1.4392 -0.3497 5 6 3.6298 0.9938 -1.7776 6 1 2.7734 0.6995 -2.3662 7 6 4.8916 0.9622 -2.3324 8 7 5.9342 1.3210 -1.6157 9 14 5.1201 0.4094 -4.1020 10 1 5.3379 -1.0590 -4.1378 11 1 3.9064 0.7490 -4.8874 12 1 6.2977 1.0989 -4.6878 13 6 1.7704 2.0315 1.2953 14 1 0.7234 1.8906 1.5635 15 6 2.6535 1.3613 2.3652 16 6 2.7973 2.2120 3.6407 17 6 1.5010 2.8536 4.0555 18 6 1.4436 4.2741 3.4573 19 6 1.0469 4.2706 2.0570 20 6 2.0455 3.5051 1.1649 21 1 3.0640 3.7175 1.4896 22 8 1.8826 3.9051 -0.1973 23 1 -0.3633 0.5995 -0.8347 24 1 -0.3633 -1.0226 -0.1019 25 1 -0.3633 0.4230 0.9366 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.0072 0.7800 0.3120 29 1 3.8083 2.4610 -0.2381 30 1 6.8219 1.2991 -2.0062 31 1 2.2132 0.4008 2.6330 32 1 3.6438 1.1865 1.9444 33 1 3.5356 2.9933 3.4603 34 1 3.1503 1.5742 4.4511 35 1 1.4529 2.9121 5.1429 36 1 0.6623 2.2654 3.6832 37 1 2.4283 4.7337 3.5441 38 1 0.7277 4.8679 4.0255 39 1 0.9786 5.3005 1.7068 40 1 0.0661 3.8030 1.9706 41 1 2.0041 4.8529 -0.3461 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084082483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:25 Heat of formation + Delta-G solvation = -53.474434 kcal Electronic energy + Delta-G solvation = -19130.926800 eV Core-core repulsion = 16431.501149 eV Total energy + Delta-G solvation = -2699.425651 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.52689 -36.12084 -35.27333 -32.54428 -31.61589 -30.37044 -28.96781 -26.07446 -24.44239 -23.33661 -22.34833 -20.71621 -20.37014 -17.98431 -16.83190 -16.36314 -15.40570 -14.81144 -14.32311 -14.15865 -14.08117 -13.77196 -13.45968 -13.02421 -12.79513 -12.36853 -12.30215 -12.00697 -11.61805 -11.20628 -11.14454 -10.99219 -10.85737 -10.64071 -10.53068 -10.42264 -10.32266 -10.07740 -9.89197 -9.86744 -9.51841 -9.08421 -8.96447 -8.29775 -6.91381 -5.90509 -3.88784 3.38293 3.44199 3.49891 4.51558 4.67907 4.80893 4.82402 5.15563 5.23491 5.43431 5.44868 5.47162 5.52204 5.57137 5.66899 5.83224 5.91482 5.96996 6.07508 6.15455 6.17643 6.22216 6.26993 6.35266 6.36529 6.41697 6.49803 6.53475 6.62972 6.80184 6.85387 6.93676 7.51460 7.55463 7.95369 8.25070 8.41749 8.47386 8.78013 9.18886 9.73602 11.20537 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.007344 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.031108 B = 3811.543167 C = 4022.454624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 N -0.509 5.509 4 C 0.197 3.803 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.274 1.274 12 H -0.288 1.288 13 C 0.094 3.906 14 H 0.068 0.932 15 C -0.158 4.158 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.149 4.149 20 C 0.122 3.878 21 H 0.048 0.952 22 O -0.523 6.523 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.017 0.983 28 H -0.013 1.013 29 H 0.037 0.963 30 H 0.258 0.742 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.713 3.946 10.284 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.232 5.232 4 C 0.072 3.928 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.543 5.543 9 Si 0.722 3.278 10 H -0.210 1.210 11 H -0.199 1.199 12 H -0.214 1.214 13 C -0.016 4.016 14 H 0.086 0.914 15 C -0.197 4.197 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.188 4.188 20 C 0.062 3.938 21 H 0.066 0.934 22 O -0.324 6.324 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.035 0.965 28 H 0.004 0.996 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.897 3.569 9.799 13.708 hybrid contribution 0.856 -0.149 -0.133 0.879 sum -8.041 3.420 9.667 13.031 Atomic orbital electron populations 1.21786 0.96968 1.00049 1.01214 1.22024 0.93956 0.91210 1.00681 1.62396 1.21954 1.14390 1.24474 1.19698 0.80994 0.96855 0.95223 1.21200 0.92404 1.42486 0.97253 0.92127 1.24952 0.96034 0.96008 0.97762 1.69956 0.98601 1.49291 1.36469 0.86565 0.77576 0.78415 0.85252 1.20967 1.19858 1.21420 1.21475 0.98272 0.92346 0.89511 0.91397 1.22689 1.02685 0.98842 0.95484 1.21286 0.97390 0.99422 0.97270 1.21360 0.98616 0.95996 0.99514 1.20431 1.01575 0.97111 0.96088 1.21239 1.00839 1.00736 0.95940 1.21374 0.96125 0.94005 0.82268 0.93392 1.86958 1.94147 1.26759 1.24555 0.92142 0.93680 0.94105 0.89957 0.96516 0.99587 0.94546 0.93232 0.92551 0.90311 0.92185 0.92778 0.92360 0.91681 0.92228 0.92603 0.92199 0.91770 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.83 37.16 0.37 -2.03 16 2 C 0.05 1.01 5.42 -3.82 -0.02 0.99 16 3 N -0.51 -11.31 3.61 -228.93 -0.83 -12.13 16 4 C 0.20 5.22 3.53 -4.97 -0.02 5.20 16 5 C -0.49 -14.32 8.30 -34.44 -0.29 -14.60 16 6 H 0.06 1.76 7.24 -52.49 -0.38 1.38 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 C 0.09 1.71 1.53 -68.42 -0.10 1.61 16 14 H 0.07 1.18 4.90 -51.93 -0.25 0.93 16 15 C -0.16 -2.71 4.50 -25.65 -0.12 -2.82 16 16 C -0.12 -1.60 5.31 -27.47 -0.15 -1.74 16 17 C -0.12 -1.39 5.60 -27.35 -0.15 -1.55 16 18 C -0.11 -1.32 5.26 -29.60 -0.16 -1.48 16 19 C -0.15 -1.97 4.94 -29.60 -0.15 -2.11 16 20 C 0.12 2.09 2.07 -27.34 -0.06 2.04 16 21 H 0.05 0.87 6.84 -51.93 -0.36 0.52 16 22 O -0.52 -10.09 11.47 -35.23 -0.40 -10.49 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.63 6.77 -51.93 -0.35 0.28 16 26 H 0.08 1.85 6.59 -51.93 -0.34 1.51 16 27 H 0.02 0.33 6.45 -51.93 -0.33 0.00 16 28 H -0.01 -0.38 6.38 -51.93 -0.33 -0.71 16 29 H 0.04 1.04 6.43 -51.93 -0.33 0.71 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 0.93 7.14 -51.93 -0.37 0.56 16 32 H 0.08 1.61 5.59 -51.93 -0.29 1.32 16 33 H 0.06 0.85 6.63 -51.93 -0.34 0.51 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.80 6.99 -51.93 -0.36 0.44 16 37 H 0.06 0.69 7.47 -51.92 -0.39 0.30 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 40 H 0.06 0.86 7.47 -51.93 -0.39 0.48 16 41 H 0.36 5.22 9.00 45.56 0.41 5.63 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -31.44 299.92 -8.01 -39.46 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.08 Total: 3.04 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -0.93 Total: -15.07 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.09 Total: -38.71 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.40 Total: -10.49 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.44 -8.01 -39.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084082483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.016 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds