Wall clock time and date at job start Mon Mar 30 2020 03:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.46969 * 2 1 4 4 C 1.46906 * 110.99591 * 194.77287 * 3 2 1 5 5 C 1.50701 * 109.47301 * 66.05064 * 4 3 2 6 6 H 1.08002 * 119.99644 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99960 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00170 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99637 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47260 * 269.99921 * 9 7 5 11 11 H 1.48495 * 109.47416 * 30.00187 * 9 7 5 12 12 H 1.48506 * 109.46889 * 150.00248 * 9 7 5 13 13 C 1.46898 * 111.00009 * 70.82313 * 3 2 1 14 14 H 1.08997 * 108.84867 * 309.15197 * 13 3 2 15 15 C 1.54067 * 108.88108 * 67.70995 * 13 3 2 16 16 C 1.53998 * 112.85475 * 162.59138 * 15 13 3 17 17 C 1.50472 * 112.54531 * 41.55947 * 16 15 13 18 18 C 1.54239 * 108.53179 * 265.92792 * 17 16 15 19 19 C 1.45541 * 112.40190 * 79.97950 * 18 17 16 20 20 C 1.50473 * 108.87683 * 190.59504 * 13 3 2 21 21 H 1.08998 * 109.62659 * 264.77089 * 20 13 3 22 22 O 1.42900 * 109.62851 * 25.15664 * 20 13 3 23 23 H 1.08999 * 109.47113 * 54.31289 * 1 2 3 24 24 H 1.08997 * 109.46992 * 174.30726 * 1 2 3 25 25 H 1.09003 * 109.46859 * 294.30539 * 1 2 3 26 26 H 1.09000 * 109.47165 * 240.00089 * 2 1 3 27 27 H 1.08997 * 109.47293 * 120.00106 * 2 1 3 28 28 H 1.08998 * 109.47489 * 306.04218 * 4 3 2 29 29 H 1.09006 * 109.46776 * 186.04840 * 4 3 2 30 30 H 0.96994 * 120.00123 * 180.02562 * 8 7 5 31 31 H 1.09001 * 108.80916 * 283.36012 * 15 13 3 32 32 H 1.09005 * 108.81117 * 41.63313 * 15 13 3 33 33 H 1.09002 * 108.79205 * 280.81097 * 16 15 13 34 34 H 1.08995 * 108.83045 * 162.34108 * 16 15 13 35 35 H 1.09004 * 109.62163 * 146.21926 * 17 16 15 36 36 H 1.08999 * 109.79295 * 25.74179 * 17 16 15 37 37 H 1.09008 * 108.89215 * 319.23009 * 18 17 16 38 38 H 1.08998 * 108.89950 * 200.73801 * 18 17 16 39 39 H 1.08996 * 108.89812 * 177.31374 * 19 18 17 40 40 H 1.09003 * 108.81390 * 58.76597 * 19 18 17 41 41 H 0.96705 * 113.99576 * 177.25098 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4454 1.4392 -0.3497 5 6 3.6298 0.9938 -1.7776 6 1 2.7734 0.6995 -2.3662 7 6 4.8916 0.9622 -2.3324 8 7 5.9342 1.3210 -1.6157 9 14 5.1201 0.4094 -4.1020 10 1 5.3379 -1.0590 -4.1378 11 1 3.9064 0.7490 -4.8874 12 1 6.2977 1.0989 -4.6878 13 6 1.7704 2.0315 1.2953 14 1 0.7234 1.8906 1.5635 15 6 2.6535 1.3613 2.3652 16 6 2.7973 2.2120 3.6407 17 6 1.5010 2.8536 4.0555 18 6 1.4436 4.2741 3.4573 19 6 1.0469 4.2706 2.0570 20 6 2.0455 3.5051 1.1649 21 1 3.0640 3.7175 1.4896 22 8 1.8826 3.9051 -0.1973 23 1 -0.3633 0.5995 -0.8347 24 1 -0.3633 -1.0226 -0.1019 25 1 -0.3633 0.4230 0.9366 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.0072 0.7800 0.3120 29 1 3.8083 2.4610 -0.2381 30 1 6.8219 1.2991 -2.0062 31 1 2.2132 0.4008 2.6330 32 1 3.6438 1.1865 1.9444 33 1 3.5356 2.9933 3.4603 34 1 3.1503 1.5742 4.4511 35 1 1.4529 2.9121 5.1429 36 1 0.6623 2.2654 3.6832 37 1 2.4283 4.7337 3.5441 38 1 0.7277 4.8679 4.0255 39 1 0.9786 5.3005 1.7068 40 1 0.0661 3.8030 1.9706 41 1 2.0041 4.8529 -0.3461 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084082483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:18 Heat of formation + Delta-G solvation = -75.566716 kcal Electronic energy + Delta-G solvation = -19131.884793 eV Core-core repulsion = 16431.501149 eV Total energy + Delta-G solvation = -2700.383644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.90877 -37.64755 -36.61235 -34.72639 -32.86058 -31.78632 -30.70122 -27.92318 -25.76486 -24.77892 -24.18764 -22.22554 -21.47612 -19.51338 -18.47937 -18.22789 -16.93669 -16.55698 -16.02470 -15.47802 -15.30081 -15.22299 -14.86181 -14.54497 -14.19225 -14.06724 -13.82506 -13.57639 -13.04082 -12.87274 -12.68891 -12.59988 -12.44086 -12.36519 -12.01026 -11.78665 -11.66105 -11.55061 -11.51469 -11.25035 -11.11683 -10.91055 -10.54363 -10.43867 -8.71644 -8.15031 -6.22729 1.38819 1.40631 1.52497 2.42333 3.16385 3.25026 3.52772 3.74344 3.94661 4.09115 4.14115 4.22501 4.26394 4.35488 4.38666 4.52528 4.59763 4.70755 4.76030 4.80046 4.91806 5.06751 5.07211 5.16347 5.19279 5.23089 5.27113 5.29205 5.32179 5.37165 5.41586 5.47580 5.54422 5.59867 5.71424 6.17848 6.53805 6.79472 6.94839 7.19924 7.45372 8.95438 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.007344 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.031108 B = 3811.543167 C = 4022.454624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.047 3.953 3 N -0.520 5.520 4 C 0.223 3.777 5 C -0.515 4.515 6 H 0.054 0.946 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.268 1.268 12 H -0.281 1.281 13 C 0.092 3.908 14 H 0.086 0.914 15 C -0.151 4.151 16 C -0.110 4.110 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.136 4.136 20 C 0.118 3.882 21 H 0.027 0.973 22 O -0.555 6.555 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.019 0.981 28 H -0.044 1.044 29 H 0.007 0.993 30 H 0.262 0.738 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 4.249 11.077 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 N -0.243 5.243 4 C 0.097 3.903 5 C -0.553 4.553 6 H 0.072 0.928 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.193 1.193 12 H -0.206 1.206 13 C -0.017 4.017 14 H 0.104 0.896 15 C -0.190 4.190 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.174 4.174 20 C 0.059 3.941 21 H 0.045 0.955 22 O -0.359 6.359 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.037 0.963 28 H -0.026 1.026 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.723 3.881 10.608 15.575 hybrid contribution 1.430 -0.246 -0.350 1.493 sum -9.293 3.635 10.258 14.311 Atomic orbital electron populations 1.21671 0.93564 1.01735 1.01712 1.22059 0.96638 0.90043 0.99394 1.62313 1.18832 1.15699 1.27448 1.19203 0.83396 0.94041 0.93699 1.21504 0.92516 1.42834 0.98456 0.92820 1.25847 0.95614 0.95866 1.02404 1.70086 0.99091 1.50043 1.38477 0.85456 0.77686 0.78337 0.79564 1.19877 1.19294 1.20639 1.21652 0.99249 0.92877 0.87938 0.89642 1.22583 0.99855 0.99858 0.96738 1.21265 0.98900 0.98968 0.95668 1.21362 0.96821 0.95818 1.01132 1.20447 1.02299 0.97353 0.95149 1.21104 0.99271 1.00915 0.96074 1.21456 0.96482 0.93881 0.82290 0.95488 1.86881 1.94249 1.28614 1.26165 0.93120 0.91116 0.92323 0.92863 0.96253 1.02622 0.97453 0.92970 0.92061 0.94662 0.93084 0.91438 0.89803 0.91660 0.92420 0.89806 0.90527 0.91436 0.78077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.83 71.98 0.71 -3.43 16 2 C 0.05 1.94 5.42 86.30 0.47 2.41 16 3 N -0.52 -23.76 3.61 -878.20 -3.17 -26.93 16 4 C 0.22 12.44 3.53 85.56 0.30 12.74 16 5 C -0.51 -30.90 8.30 25.60 0.21 -30.69 16 6 H 0.05 3.22 7.24 -2.91 -0.02 3.20 16 7 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 8 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 9 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 C 0.09 3.37 1.53 44.46 0.07 3.44 16 14 H 0.09 2.83 4.90 -2.39 -0.01 2.82 16 15 C -0.15 -5.28 4.50 31.29 0.14 -5.14 16 16 C -0.11 -2.93 5.31 30.11 0.16 -2.77 16 17 C -0.11 -2.35 5.60 30.20 0.17 -2.18 16 18 C -0.12 -2.30 5.26 28.74 0.15 -2.15 16 19 C -0.14 -3.26 4.94 28.74 0.14 -3.12 16 20 C 0.12 4.07 2.07 30.20 0.06 4.13 16 21 H 0.03 1.03 6.84 -2.39 -0.02 1.01 16 22 O -0.55 -21.76 11.47 -148.98 -1.71 -23.47 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.66 6.77 -2.39 -0.02 1.64 16 26 H 0.05 2.48 6.59 -2.39 -0.02 2.46 16 27 H 0.02 0.78 6.45 -2.39 -0.02 0.76 16 28 H -0.04 -2.64 6.38 -2.39 -0.02 -2.66 16 29 H 0.01 0.45 6.43 -2.38 -0.02 0.43 16 30 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.06 2.02 7.14 -2.39 -0.02 2.01 16 32 H 0.03 1.53 5.59 -2.38 -0.01 1.52 16 33 H 0.05 1.45 6.63 -2.39 -0.02 1.43 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 1.38 6.99 -2.39 -0.02 1.36 16 37 H 0.06 1.20 7.47 -2.38 -0.02 1.18 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.60 8.04 -2.39 -0.02 1.58 16 40 H 0.07 1.61 7.47 -2.39 -0.02 1.59 16 41 H 0.37 11.07 9.00 -74.05 -0.67 10.40 16 Total: -1.00 -70.33 299.92 0.82 -69.51 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.34 Total: 16.85 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 3.04 Total: -26.32 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -2.89 Total: -85.05 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.71 Total: -23.47 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -70.33 0.82 -69.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084082483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.054 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds