Wall clock time and date at job start Mon Mar 30 2020 03:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 H 1.09001 * 109.47149 * 53.59852 * 3 2 1 5 5 C 1.50696 * 109.47548 * 173.60407 * 3 2 1 6 6 H 1.08002 * 119.99879 * 119.99837 * 5 3 2 7 7 C 1.37874 * 120.00103 * 300.00233 * 5 3 2 8 8 N 1.31519 * 119.99916 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00289 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46961 * 89.99734 * 9 7 5 11 11 H 1.48496 * 109.47376 * 209.99649 * 9 7 5 12 12 H 1.48501 * 109.47043 * 329.99965 * 9 7 5 13 13 N 1.46910 * 109.46959 * 293.60651 * 3 2 1 14 14 C 1.46949 * 110.99806 * 321.09799 * 13 3 2 15 15 C 1.53057 * 109.36537 * 183.18885 * 14 13 3 16 16 N 1.46955 * 109.36023 * 301.60239 * 15 14 13 17 17 C 1.46900 * 110.99785 * 183.18740 * 16 15 14 18 18 C 1.46958 * 110.88363 * 59.32042 * 16 15 14 19 19 C 1.46955 * 110.99749 * 84.90032 * 13 3 2 20 20 H 1.08996 * 109.49137 * 296.77385 * 19 13 3 21 21 C 1.53002 * 109.49306 * 56.84629 * 19 13 3 22 22 N 1.46900 * 109.46950 * 282.70178 * 21 19 13 23 23 H 1.09000 * 109.46937 * 194.80790 * 1 2 3 24 24 H 1.09000 * 109.47353 * 314.80916 * 1 2 3 25 25 H 1.09005 * 109.47122 * 74.81498 * 1 2 3 26 26 H 1.09004 * 109.47654 * 240.00055 * 2 1 3 27 27 H 1.08997 * 109.47314 * 119.99397 * 2 1 3 28 28 H 0.97000 * 119.99947 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.49145 * 63.22221 * 14 13 3 30 30 H 1.09000 * 109.49012 * 303.15806 * 14 13 3 31 31 H 1.08991 * 109.48674 * 181.63184 * 15 14 13 32 32 H 1.09004 * 109.50087 * 61.57655 * 15 14 13 33 33 H 1.09003 * 109.46925 * 296.20300 * 17 16 15 34 34 H 1.08998 * 109.47332 * 56.19555 * 17 16 15 35 35 H 1.09002 * 109.47564 * 176.20296 * 17 16 15 36 36 H 1.09000 * 109.48939 * 60.64517 * 18 16 15 37 37 H 1.09000 * 109.48870 * 180.70843 * 18 16 15 38 38 H 1.09001 * 109.47060 * 42.69523 * 21 19 13 39 39 H 1.08998 * 109.47220 * 162.70001 * 21 19 13 40 40 H 1.00900 * 111.00163 * 171.10306 * 22 21 19 41 41 H 1.00906 * 110.99663 * 295.05584 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5861 1.9884 0.8271 5 6 3.5386 1.4456 0.1583 6 1 4.1615 1.8839 -0.6074 7 6 4.1144 0.8887 1.2804 8 7 3.3558 0.3553 2.2130 9 14 5.9721 0.8919 1.4763 10 1 6.3936 2.1305 2.1787 11 1 6.3883 -0.2927 2.2692 12 1 6.6112 0.8404 0.1369 13 7 1.6802 2.0891 -1.2692 14 6 1.8257 1.1561 -2.3952 15 6 1.5192 1.8884 -3.7038 16 7 0.1560 2.4345 -3.6488 17 6 -0.2037 3.0810 -4.9179 18 6 0.0106 3.3675 -2.5227 19 6 0.3170 2.6352 -1.2141 20 1 -0.3954 1.8218 -1.0772 21 6 0.2061 3.6140 -0.0434 22 7 0.0892 2.8628 1.2135 23 1 -0.3633 -0.9935 0.2627 24 1 -0.3634 0.7242 0.7291 25 1 -0.3634 0.2692 -0.9918 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.7609 -0.0361 3.0027 29 1 1.1304 0.3257 -2.2717 30 1 2.8465 0.7750 -2.4222 31 1 1.5983 1.1911 -4.5378 32 1 2.2317 2.7019 -3.8411 33 1 0.4490 3.9375 -5.0871 34 1 -0.0871 2.3685 -5.7344 35 1 -1.2397 3.4169 -4.8738 36 1 0.7059 4.1979 -2.6463 37 1 -1.0102 3.7486 -2.4957 38 1 1.0961 4.2424 -0.0096 39 1 -0.6761 4.2403 -0.1758 40 1 0.1601 3.4778 2.0103 41 1 -0.7698 2.3340 1.2402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087613777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:46 Heat of formation + Delta-G solvation = 39.690475 kcal Electronic energy + Delta-G solvation = -19451.475233 eV Core-core repulsion = 16788.382266 eV Total energy + Delta-G solvation = -2663.092966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.27046 -36.05782 -34.03684 -32.27962 -30.72509 -30.00785 -28.10432 -25.94440 -24.58336 -23.29255 -22.62352 -20.78933 -19.58596 -18.56407 -16.08711 -15.75429 -15.22843 -14.86050 -14.64954 -14.47649 -14.16193 -13.86777 -13.33877 -13.03186 -12.45961 -12.37035 -11.90609 -11.70447 -11.47283 -11.21044 -11.13828 -10.94063 -10.65713 -10.55824 -10.36099 -10.27904 -10.17768 -9.80280 -9.42435 -9.27518 -8.85239 -8.22974 -8.03995 -7.27121 -6.77405 -5.73380 -3.72676 3.42651 3.48924 3.52837 4.23491 4.59793 4.99603 5.06088 5.33522 5.46905 5.56302 5.64278 5.67054 5.71976 5.84479 5.90755 5.94883 6.01822 6.05151 6.19099 6.34310 6.40888 6.46835 6.59628 6.69906 6.82823 6.85633 7.17442 7.33378 7.35700 7.42554 7.60942 7.69532 7.92208 7.95815 8.02782 8.12068 8.70026 8.83206 8.97236 9.36684 9.87525 11.31800 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.008548 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.395889 B = 3274.991495 C = 3662.669971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.144 4.144 3 C 0.170 3.830 4 H 0.131 0.869 5 C -0.486 4.486 6 H 0.051 0.949 7 C 0.055 3.945 8 N -0.891 5.891 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.520 5.520 14 C 0.060 3.940 15 C 0.055 3.945 16 N -0.544 5.544 17 C 0.027 3.973 18 C 0.063 3.937 19 C 0.071 3.929 20 H 0.060 0.940 21 C 0.073 3.927 22 N -0.818 5.818 23 H 0.021 0.979 24 H 0.060 0.940 25 H 0.037 0.963 26 H 0.025 0.975 27 H 0.092 0.908 28 H 0.253 0.747 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.017 0.983 40 H 0.335 0.665 41 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 4.964 -7.413 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.183 4.183 3 C 0.064 3.936 4 H 0.147 0.853 5 C -0.525 4.525 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.245 5.245 14 C -0.069 4.069 15 C -0.073 4.073 16 N -0.268 5.268 17 C -0.122 4.122 18 C -0.066 4.066 19 C -0.039 4.039 20 H 0.078 0.922 21 C -0.059 4.059 22 N -0.348 5.348 23 H 0.041 0.959 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.110 0.890 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.035 0.965 40 H 0.148 0.852 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.829 4.516 -7.470 11.726 hybrid contribution 0.320 0.412 0.118 0.535 sum -7.509 4.929 -7.352 11.607 Atomic orbital electron populations 1.22242 1.00059 0.99180 0.99607 1.22136 0.91447 1.02926 1.01815 1.20565 0.95217 0.89799 0.88008 0.85280 1.21258 0.92134 1.35380 1.03735 0.93103 1.24840 0.96986 0.96310 0.96271 1.69908 1.33762 1.40287 1.09239 0.86727 0.87114 0.77085 0.77708 1.21145 1.21711 1.20391 1.62586 1.19727 1.36248 1.05971 1.22075 1.01018 0.94294 0.89517 1.22296 0.87705 0.98290 0.98988 1.62131 1.26325 1.35397 1.02948 1.22316 1.00239 0.97525 0.92105 1.22183 0.99494 0.93799 0.91076 1.21896 0.93699 0.96738 0.91538 0.92228 1.21729 0.99583 0.94819 0.89726 1.58997 1.41989 1.30074 1.03768 0.95940 0.92151 0.94436 0.95679 0.88967 0.93655 0.94364 0.90490 0.91637 0.94671 0.96075 0.91833 0.91963 0.94624 0.91820 0.90188 0.96504 0.85161 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.16 37.15 0.30 -2.84 16 2 C -0.14 -3.48 4.73 -26.73 -0.13 -3.60 16 3 C 0.17 4.15 1.65 -68.86 -0.11 4.03 16 4 H 0.13 3.22 3.96 -54.29 -0.22 3.01 16 5 C -0.49 -13.54 8.36 -34.44 -0.29 -13.83 16 6 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 8 N -0.89 -25.58 11.29 55.43 0.63 -24.95 16 9 Si 0.88 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.52 -11.08 4.36 -219.94 -0.96 -12.04 16 14 C 0.06 1.20 4.23 -3.77 -0.02 1.19 16 15 C 0.06 0.93 5.62 -3.76 -0.02 0.91 16 16 N -0.54 -8.55 4.97 -242.75 -1.21 -9.76 16 17 C 0.03 0.33 9.60 60.06 0.58 0.91 16 18 C 0.06 1.00 4.83 -3.76 -0.02 0.98 16 19 C 0.07 1.28 1.88 -67.65 -0.13 1.15 16 20 H 0.06 1.13 4.30 -51.93 -0.22 0.91 16 21 C 0.07 1.20 5.96 -3.82 -0.02 1.17 16 22 N -0.82 -13.64 5.46 -10.37 -0.06 -13.69 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 1.17 4.71 -51.93 -0.24 0.93 16 25 H 0.04 0.74 4.86 -51.93 -0.25 0.49 16 26 H 0.02 0.61 6.02 -51.93 -0.31 0.30 16 27 H 0.09 2.54 5.93 -51.93 -0.31 2.23 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.04 0.80 5.12 -51.93 -0.27 0.54 16 30 H 0.08 1.68 7.76 -51.93 -0.40 1.28 16 31 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.02 0.23 8.02 -51.93 -0.42 -0.18 16 40 H 0.34 4.99 9.08 -39.29 -0.36 4.63 16 41 H 0.33 5.01 7.22 -39.29 -0.28 4.73 16 LS Contribution 293.59 15.07 4.42 4.42 Total: -1.00 -29.32 293.59 -8.77 -38.08 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.63 Total: 9.45 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 0.05 Total: -8.46 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -1.60 Total: -60.44 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.32 -8.77 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087613777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.775 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds