Wall clock time and date at job start Mon Mar 30 2020 03:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 H 1.09001 * 109.47149 * 53.59852 * 3 2 1 5 5 C 1.50696 * 109.47548 * 173.60407 * 3 2 1 6 6 H 1.08002 * 119.99879 * 119.99837 * 5 3 2 7 7 C 1.37874 * 120.00103 * 300.00233 * 5 3 2 8 8 N 1.31519 * 119.99916 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00289 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46961 * 89.99734 * 9 7 5 11 11 H 1.48496 * 109.47376 * 209.99649 * 9 7 5 12 12 H 1.48501 * 109.47043 * 329.99965 * 9 7 5 13 13 N 1.46910 * 109.46959 * 293.60651 * 3 2 1 14 14 C 1.46949 * 110.99806 * 321.09799 * 13 3 2 15 15 C 1.53057 * 109.36537 * 183.18885 * 14 13 3 16 16 N 1.46955 * 109.36023 * 301.60239 * 15 14 13 17 17 C 1.46900 * 110.99785 * 183.18740 * 16 15 14 18 18 C 1.46958 * 110.88363 * 59.32042 * 16 15 14 19 19 C 1.46955 * 110.99749 * 84.90032 * 13 3 2 20 20 H 1.08996 * 109.49137 * 296.77385 * 19 13 3 21 21 C 1.53002 * 109.49306 * 56.84629 * 19 13 3 22 22 N 1.46900 * 109.46950 * 282.70178 * 21 19 13 23 23 H 1.09000 * 109.46937 * 194.80790 * 1 2 3 24 24 H 1.09000 * 109.47353 * 314.80916 * 1 2 3 25 25 H 1.09005 * 109.47122 * 74.81498 * 1 2 3 26 26 H 1.09004 * 109.47654 * 240.00055 * 2 1 3 27 27 H 1.08997 * 109.47314 * 119.99397 * 2 1 3 28 28 H 0.97000 * 119.99947 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.49145 * 63.22221 * 14 13 3 30 30 H 1.09000 * 109.49012 * 303.15806 * 14 13 3 31 31 H 1.08991 * 109.48674 * 181.63184 * 15 14 13 32 32 H 1.09004 * 109.50087 * 61.57655 * 15 14 13 33 33 H 1.09003 * 109.46925 * 296.20300 * 17 16 15 34 34 H 1.08998 * 109.47332 * 56.19555 * 17 16 15 35 35 H 1.09002 * 109.47564 * 176.20296 * 17 16 15 36 36 H 1.09000 * 109.48939 * 60.64517 * 18 16 15 37 37 H 1.09000 * 109.48870 * 180.70843 * 18 16 15 38 38 H 1.09001 * 109.47060 * 42.69523 * 21 19 13 39 39 H 1.08998 * 109.47220 * 162.70001 * 21 19 13 40 40 H 1.00900 * 111.00163 * 171.10306 * 22 21 19 41 41 H 1.00906 * 110.99663 * 295.05584 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5861 1.9884 0.8271 5 6 3.5386 1.4456 0.1583 6 1 4.1615 1.8839 -0.6074 7 6 4.1144 0.8887 1.2804 8 7 3.3558 0.3553 2.2130 9 14 5.9721 0.8919 1.4763 10 1 6.3936 2.1305 2.1787 11 1 6.3883 -0.2927 2.2692 12 1 6.6112 0.8404 0.1369 13 7 1.6802 2.0891 -1.2692 14 6 1.8257 1.1561 -2.3952 15 6 1.5192 1.8884 -3.7038 16 7 0.1560 2.4345 -3.6488 17 6 -0.2037 3.0810 -4.9179 18 6 0.0106 3.3675 -2.5227 19 6 0.3170 2.6352 -1.2141 20 1 -0.3954 1.8218 -1.0772 21 6 0.2061 3.6140 -0.0434 22 7 0.0892 2.8628 1.2135 23 1 -0.3633 -0.9935 0.2627 24 1 -0.3634 0.7242 0.7291 25 1 -0.3634 0.2692 -0.9918 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.7609 -0.0361 3.0027 29 1 1.1304 0.3257 -2.2717 30 1 2.8465 0.7750 -2.4222 31 1 1.5983 1.1911 -4.5378 32 1 2.2317 2.7019 -3.8411 33 1 0.4490 3.9375 -5.0871 34 1 -0.0871 2.3685 -5.7344 35 1 -1.2397 3.4169 -4.8738 36 1 0.7059 4.1979 -2.6463 37 1 -1.0102 3.7486 -2.4957 38 1 1.0961 4.2424 -0.0096 39 1 -0.6761 4.2403 -0.1758 40 1 0.1601 3.4778 2.0103 41 1 -0.7698 2.3340 1.2402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087613777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:46 Heat of formation + Delta-G solvation = 17.064284 kcal Electronic energy + Delta-G solvation = -19452.456378 eV Core-core repulsion = 16788.382266 eV Total energy + Delta-G solvation = -2664.074112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76229 -37.47980 -35.56666 -34.17368 -32.43385 -31.40898 -29.72719 -27.60173 -25.93777 -24.81408 -24.37555 -22.14978 -21.28252 -20.16798 -18.10621 -17.24377 -16.70800 -16.40038 -16.17673 -15.91217 -15.69490 -15.27742 -14.71997 -14.69622 -14.25651 -13.69028 -13.21911 -13.06233 -13.01825 -12.91444 -12.71466 -12.65116 -12.47857 -12.36134 -12.05761 -11.88546 -11.77552 -11.48782 -11.21792 -11.05998 -10.71648 -10.27668 -9.26639 -8.79762 -8.47058 -7.87426 -5.92125 1.42558 1.43899 1.52749 2.53194 3.04180 3.37649 3.54258 3.74695 4.13886 4.24653 4.31280 4.46081 4.47900 4.58617 4.61895 4.68110 4.73205 4.78505 4.81516 4.87464 4.95075 4.96466 5.02999 5.11203 5.19184 5.29760 5.47802 5.62371 5.75093 5.84373 6.06106 6.07348 6.20289 6.29803 6.41517 6.62439 6.73836 6.97098 7.13675 7.30375 7.71539 9.14855 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.008548 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.395889 B = 3274.991495 C = 3662.669971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.172 3.828 4 H 0.130 0.870 5 C -0.503 4.503 6 H 0.031 0.969 7 C 0.013 3.987 8 N -0.910 5.910 9 Si 0.938 3.062 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.280 1.280 13 N -0.532 5.532 14 C 0.063 3.937 15 C 0.065 3.935 16 N -0.552 5.552 17 C 0.027 3.973 18 C 0.068 3.932 19 C 0.069 3.931 20 H 0.055 0.945 21 C 0.078 3.922 22 N -0.837 5.837 23 H 0.030 0.970 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.009 0.991 27 H 0.056 0.944 28 H 0.253 0.747 29 H 0.029 0.971 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.027 0.973 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.345 0.655 41 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 5.929 -8.372 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.065 3.935 4 H 0.146 0.854 5 C -0.543 4.543 6 H 0.049 0.951 7 C -0.185 4.185 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.206 1.206 13 N -0.257 5.257 14 C -0.065 4.065 15 C -0.063 4.063 16 N -0.277 5.277 17 C -0.120 4.120 18 C -0.061 4.061 19 C -0.041 4.041 20 H 0.073 0.927 21 C -0.053 4.053 22 N -0.370 5.370 23 H 0.049 0.951 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.028 0.972 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.159 0.841 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.313 5.495 -8.442 13.719 hybrid contribution 0.764 0.118 0.385 0.864 sum -8.549 5.613 -8.057 13.020 Atomic orbital electron populations 1.22081 0.97012 1.00082 1.00509 1.21959 0.94113 1.02291 0.99208 1.20435 0.93216 0.90068 0.89779 0.85361 1.21582 0.94257 1.35165 1.03257 0.95058 1.25434 1.00547 0.96267 0.96217 1.70025 1.34951 1.40722 1.09406 0.85875 0.82928 0.77177 0.77397 1.20608 1.21317 1.20566 1.62467 1.22442 1.35944 1.04838 1.21967 0.99017 0.94419 0.91147 1.22130 0.88622 0.98139 0.97394 1.62135 1.24941 1.36119 1.04503 1.22396 1.01304 0.97738 0.90595 1.22162 1.00896 0.93128 0.89879 1.22016 0.91321 0.96996 0.93717 0.92726 1.21655 1.00181 0.94436 0.89019 1.58784 1.42825 1.30966 1.04414 0.95120 0.91108 0.93488 0.97190 0.92519 0.93804 0.95330 0.93518 0.89777 0.95512 0.95777 0.90674 0.90063 0.95301 0.88947 0.92323 0.92858 0.84079 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 8.16 71.98 0.59 -5.00 16 2 C -0.14 -6.70 4.73 30.59 0.14 -6.56 16 3 C 0.17 8.52 1.65 44.17 0.07 8.60 16 4 H 0.13 6.46 3.96 -7.06 -0.03 6.43 16 5 C -0.50 -28.81 8.36 25.60 0.21 -28.60 16 6 H 0.03 1.86 7.81 -2.91 -0.02 1.84 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.91 -53.09 11.29 21.45 0.24 -52.85 16 9 Si 0.94 45.86 29.54 68.60 2.03 47.89 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 13 N -0.53 -22.71 4.36 -849.75 -3.71 -26.42 16 14 C 0.06 2.58 4.23 86.31 0.36 2.94 16 15 C 0.07 2.13 5.62 86.31 0.49 2.62 16 16 N -0.55 -15.88 4.97 -921.92 -4.58 -20.46 16 17 C 0.03 0.58 9.60 127.69 1.23 1.81 16 18 C 0.07 1.96 4.83 86.31 0.42 2.38 16 19 C 0.07 2.36 1.88 44.92 0.08 2.44 16 20 H 0.06 1.95 4.30 -2.39 -0.01 1.94 16 21 C 0.08 2.43 5.96 86.30 0.51 2.94 16 22 N -0.84 -26.85 5.46 -186.72 -1.02 -27.86 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 2.66 4.71 -2.39 -0.01 2.65 16 25 H 0.05 1.79 4.86 -2.38 -0.01 1.78 16 26 H 0.01 0.48 6.02 -2.38 -0.01 0.47 16 27 H 0.06 3.20 5.93 -2.39 -0.01 3.19 16 28 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.03 1.21 5.12 -2.38 -0.01 1.19 16 30 H 0.05 2.13 7.76 -2.39 -0.02 2.11 16 31 H 0.08 2.40 8.13 -2.39 -0.02 2.38 16 32 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.28 8.02 -2.39 -0.02 1.26 16 40 H 0.34 9.86 9.08 -89.69 -0.81 9.04 16 41 H 0.34 9.67 7.22 -89.69 -0.65 9.02 16 Total: -1.00 -63.59 293.59 -2.93 -66.51 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.45 Total: 28.45 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.56 Total: -15.26 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -9.06 Total: -127.59 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -63.59 -2.93 -66.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087613777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.576 kcal (2) G-P(sol) polarization free energy of solvation -63.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds