Wall clock time and date at job start Mon Mar 30 2020 03:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47129 * 2 1 4 4 H 1.08996 * 109.46764 * 305.00101 * 3 2 1 5 5 C 1.50697 * 109.47081 * 184.99533 * 3 2 1 6 6 H 1.07998 * 119.99952 * 240.00284 * 5 3 2 7 7 C 1.37879 * 119.99934 * 60.00256 * 5 3 2 8 8 N 1.31521 * 119.99757 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00003 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47511 * 90.00100 * 9 7 5 11 11 H 1.48506 * 109.47070 * 209.99992 * 9 7 5 12 12 H 1.48505 * 109.47034 * 329.99423 * 9 7 5 13 13 N 1.46905 * 109.46863 * 64.99747 * 3 2 1 14 14 C 1.46954 * 110.99841 * 53.35834 * 13 3 2 15 15 C 1.53058 * 109.36304 * 183.18706 * 14 13 3 16 16 N 1.46962 * 109.36267 * 301.59805 * 15 14 13 17 17 C 1.46900 * 110.99777 * 183.18411 * 16 15 14 18 18 C 1.46959 * 110.87640 * 59.32148 * 16 15 14 19 19 C 1.46952 * 110.99661 * 177.15513 * 13 3 2 20 20 H 1.08994 * 109.49105 * 296.77776 * 19 13 3 21 21 C 1.53004 * 109.49040 * 56.82619 * 19 13 3 22 22 N 1.46901 * 109.47043 * 293.25265 * 21 19 13 23 23 H 1.08995 * 109.47417 * 300.00239 * 1 2 3 24 24 H 1.09002 * 109.47006 * 59.99753 * 1 2 3 25 25 H 1.08996 * 109.46857 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47417 * 239.99760 * 2 1 3 27 27 H 1.08998 * 109.47107 * 119.99740 * 2 1 3 28 28 H 0.96995 * 119.99447 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.49348 * 303.14964 * 14 13 3 30 30 H 1.09001 * 109.49411 * 63.22255 * 14 13 3 31 31 H 1.09002 * 109.48790 * 181.63305 * 15 14 13 32 32 H 1.08998 * 109.50340 * 61.57514 * 15 14 13 33 33 H 1.08994 * 109.47442 * 296.20470 * 17 16 15 34 34 H 1.09010 * 109.46521 * 56.20688 * 17 16 15 35 35 H 1.09003 * 109.46832 * 176.19728 * 17 16 15 36 36 H 1.09000 * 109.48322 * 180.71411 * 18 16 15 37 37 H 1.08997 * 109.49137 * 60.64599 * 18 16 15 38 38 H 1.09001 * 109.47229 * 53.24892 * 21 19 13 39 39 H 1.08997 * 109.47309 * 173.25246 * 21 19 13 40 40 H 1.00897 * 111.00220 * 179.97438 * 22 21 19 41 41 H 1.00902 * 111.00135 * 303.95679 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8889 0.6525 7 6 4.1433 0.8784 -1.2278 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3809 10 1 6.5539 -0.3520 -0.7596 11 1 6.3837 0.9214 -2.8162 12 1 6.5576 2.0720 -0.6886 13 7 1.6513 2.0993 1.2553 14 6 2.0865 1.3128 2.4178 15 6 1.5945 1.9880 3.7003 16 7 2.1260 3.3567 3.7651 17 6 1.7372 4.0134 5.0203 18 6 1.6907 4.1431 2.6024 19 6 2.1828 3.4678 1.3201 20 1 3.2722 3.4352 1.3212 21 6 1.6971 4.2621 0.1059 22 7 2.2990 3.7081 -1.1143 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8294 -0.0618 -2.9493 29 1 1.6700 0.3076 2.3534 30 1 3.1749 1.2557 2.4315 31 1 1.9408 1.4221 4.5651 32 1 0.5050 2.0207 3.6995 33 1 0.6529 4.1178 5.0551 34 1 2.0716 3.4103 5.8645 35 1 2.1991 4.9994 5.0726 36 1 2.1073 5.1483 2.6669 37 1 0.6024 4.2002 2.5888 38 1 0.6113 4.1947 0.0382 39 1 1.9904 5.3063 0.2138 40 1 1.9933 4.2157 -1.9309 41 1 3.3059 3.6998 -1.0492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087613778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:49 Heat of formation + Delta-G solvation = 29.528228 kcal Electronic energy + Delta-G solvation = -19478.161120 eV Core-core repulsion = 16814.627485 eV Total energy + Delta-G solvation = -2663.533635 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.01226 -35.89758 -33.85677 -32.24662 -30.87165 -29.80693 -27.98769 -25.72197 -24.37967 -23.19856 -22.57912 -20.69979 -19.55487 -18.58513 -15.96664 -15.63269 -15.02792 -14.70527 -14.48280 -14.41958 -13.86717 -13.59338 -13.28621 -12.96677 -12.64596 -12.00445 -11.81113 -11.77829 -11.41853 -11.40542 -11.14969 -10.96760 -10.71962 -10.52918 -10.38408 -10.21004 -10.12789 -9.52134 -9.49011 -9.21057 -8.81001 -8.19091 -7.98774 -7.09917 -6.80232 -5.72263 -3.78787 3.35901 3.43755 3.46677 4.29385 4.56848 5.11606 5.25252 5.40533 5.51314 5.60530 5.69261 5.74483 5.85227 5.94446 6.02059 6.04478 6.10911 6.12341 6.29017 6.39778 6.52577 6.60615 6.66513 6.83043 6.91005 7.03822 7.24449 7.39209 7.41496 7.49559 7.57837 7.94173 8.01258 8.11389 8.36370 8.44722 8.51119 8.68436 8.85767 9.33460 9.81899 11.27112 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.009311 C = 0.008700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.172573 B = 3006.396679 C = 3217.691514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C 0.197 3.803 4 H 0.110 0.890 5 C -0.510 4.510 6 H 0.045 0.955 7 C 0.071 3.929 8 N -0.882 5.882 9 Si 0.870 3.130 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.525 5.525 14 C 0.056 3.944 15 C 0.058 3.942 16 N -0.543 5.543 17 C 0.027 3.973 18 C 0.064 3.936 19 C 0.094 3.906 20 H 0.052 0.948 21 C 0.079 3.921 22 N -0.807 5.807 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.019 0.981 26 H 0.090 0.910 27 H 0.024 0.976 28 H 0.254 0.746 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.020 0.980 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.008 0.992 40 H 0.316 0.684 41 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 6.341 7.556 10.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.091 3.909 4 H 0.127 0.873 5 C -0.550 4.550 6 H 0.063 0.937 7 C -0.130 4.130 8 N -0.521 5.521 9 Si 0.699 3.301 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.250 5.250 14 C -0.072 4.072 15 C -0.070 4.070 16 N -0.267 5.267 17 C -0.121 4.121 18 C -0.065 4.065 19 C -0.016 4.016 20 H 0.070 0.930 21 C -0.053 4.053 22 N -0.337 5.337 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.109 0.891 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.026 0.974 40 H 0.127 0.873 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.545 5.587 7.559 10.441 hybrid contribution 1.702 0.815 -0.055 1.888 sum -2.843 6.403 7.503 10.265 Atomic orbital electron populations 1.21691 0.99347 0.97858 1.00346 1.21816 0.91882 1.00884 1.01431 1.20075 0.93180 0.89967 0.87630 0.87307 1.21595 0.93229 1.36133 1.04046 0.93732 1.24745 0.96079 0.96033 0.96131 1.69875 1.33721 1.39147 1.09381 0.86981 0.88257 0.78065 0.76771 1.21311 1.21671 1.20530 1.62774 1.57627 1.00548 1.04065 1.22035 0.98872 0.97027 0.89314 1.22270 0.97006 0.88780 0.98990 1.62109 1.59825 1.02982 1.01825 1.22314 0.97910 0.99378 0.92531 1.22192 0.97721 0.96028 0.90575 1.21404 0.98162 0.90919 0.91074 0.93003 1.21618 0.99392 0.93200 0.91134 1.59104 1.14769 1.57700 1.02147 0.93911 0.94159 0.96160 0.89128 0.95743 0.93618 0.90731 0.94130 0.91761 0.94997 0.96190 0.91898 0.91976 0.91831 0.94848 0.91715 0.97447 0.87253 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.80 37.16 0.36 -2.45 16 2 C -0.12 -2.89 4.85 -26.73 -0.13 -3.02 16 3 C 0.20 4.63 1.25 -68.86 -0.09 4.54 16 4 H 0.11 2.77 5.32 -51.93 -0.28 2.49 16 5 C -0.51 -12.99 5.11 -34.44 -0.18 -13.16 16 6 H 0.04 1.19 5.80 -52.49 -0.30 0.89 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -24.17 11.29 55.43 0.63 -23.55 16 9 Si 0.87 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 N -0.52 -10.86 4.03 -219.94 -0.89 -11.74 16 14 C 0.06 1.12 4.89 -3.76 -0.02 1.10 16 15 C 0.06 0.97 5.62 -3.76 -0.02 0.94 16 16 N -0.54 -8.86 4.97 -242.74 -1.21 -10.07 16 17 C 0.03 0.35 9.60 60.06 0.58 0.93 16 18 C 0.06 1.05 4.90 -3.76 -0.02 1.03 16 19 C 0.09 1.80 1.96 -67.65 -0.13 1.67 16 20 H 0.05 1.14 6.42 -51.93 -0.33 0.81 16 21 C 0.08 1.37 6.12 -3.82 -0.02 1.35 16 22 N -0.81 -15.41 5.60 -10.37 -0.06 -15.47 16 23 H 0.04 0.86 7.75 -51.93 -0.40 0.45 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 27 H 0.02 0.57 5.96 -51.93 -0.31 0.27 16 28 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.07 1.51 5.91 -51.93 -0.31 1.20 16 30 H 0.04 0.91 6.99 -51.93 -0.36 0.55 16 31 H 0.06 0.98 8.13 -51.93 -0.42 0.55 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.74 8.13 -51.92 -0.42 0.31 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 40 H 0.32 5.31 9.08 -39.29 -0.36 4.95 16 41 H 0.35 7.18 7.69 -39.29 -0.30 6.88 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -26.83 300.86 -8.82 -35.64 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.05 Total: 10.04 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 0.24 Total: -5.29 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -1.52 Total: -60.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.83 -8.82 -35.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087613778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.171 kcal (2) G-P(sol) polarization free energy of solvation -26.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds