Wall clock time and date at job start Mon Mar 30 2020 03:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47129 * 2 1 4 4 H 1.08996 * 109.46764 * 305.00101 * 3 2 1 5 5 C 1.50697 * 109.47081 * 184.99533 * 3 2 1 6 6 H 1.07998 * 119.99952 * 240.00284 * 5 3 2 7 7 C 1.37879 * 119.99934 * 60.00256 * 5 3 2 8 8 N 1.31521 * 119.99757 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00003 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47511 * 90.00100 * 9 7 5 11 11 H 1.48506 * 109.47070 * 209.99992 * 9 7 5 12 12 H 1.48505 * 109.47034 * 329.99423 * 9 7 5 13 13 N 1.46905 * 109.46863 * 64.99747 * 3 2 1 14 14 C 1.46954 * 110.99841 * 53.35834 * 13 3 2 15 15 C 1.53058 * 109.36304 * 183.18706 * 14 13 3 16 16 N 1.46962 * 109.36267 * 301.59805 * 15 14 13 17 17 C 1.46900 * 110.99777 * 183.18411 * 16 15 14 18 18 C 1.46959 * 110.87640 * 59.32148 * 16 15 14 19 19 C 1.46952 * 110.99661 * 177.15513 * 13 3 2 20 20 H 1.08994 * 109.49105 * 296.77776 * 19 13 3 21 21 C 1.53004 * 109.49040 * 56.82619 * 19 13 3 22 22 N 1.46901 * 109.47043 * 293.25265 * 21 19 13 23 23 H 1.08995 * 109.47417 * 300.00239 * 1 2 3 24 24 H 1.09002 * 109.47006 * 59.99753 * 1 2 3 25 25 H 1.08996 * 109.46857 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47417 * 239.99760 * 2 1 3 27 27 H 1.08998 * 109.47107 * 119.99740 * 2 1 3 28 28 H 0.96995 * 119.99447 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.49348 * 303.14964 * 14 13 3 30 30 H 1.09001 * 109.49411 * 63.22255 * 14 13 3 31 31 H 1.09002 * 109.48790 * 181.63305 * 15 14 13 32 32 H 1.08998 * 109.50340 * 61.57514 * 15 14 13 33 33 H 1.08994 * 109.47442 * 296.20470 * 17 16 15 34 34 H 1.09010 * 109.46521 * 56.20688 * 17 16 15 35 35 H 1.09003 * 109.46832 * 176.19728 * 17 16 15 36 36 H 1.09000 * 109.48322 * 180.71411 * 18 16 15 37 37 H 1.08997 * 109.49137 * 60.64599 * 18 16 15 38 38 H 1.09001 * 109.47229 * 53.24892 * 21 19 13 39 39 H 1.08997 * 109.47309 * 173.25246 * 21 19 13 40 40 H 1.00897 * 111.00220 * 179.97438 * 22 21 19 41 41 H 1.00902 * 111.00135 * 303.95679 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8889 0.6525 7 6 4.1433 0.8784 -1.2278 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3809 10 1 6.5539 -0.3520 -0.7596 11 1 6.3837 0.9214 -2.8162 12 1 6.5576 2.0720 -0.6886 13 7 1.6513 2.0993 1.2553 14 6 2.0865 1.3128 2.4178 15 6 1.5945 1.9880 3.7003 16 7 2.1260 3.3567 3.7651 17 6 1.7372 4.0134 5.0203 18 6 1.6907 4.1431 2.6024 19 6 2.1828 3.4678 1.3201 20 1 3.2722 3.4352 1.3212 21 6 1.6971 4.2621 0.1059 22 7 2.2990 3.7081 -1.1143 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8294 -0.0618 -2.9493 29 1 1.6700 0.3076 2.3534 30 1 3.1749 1.2557 2.4315 31 1 1.9408 1.4221 4.5651 32 1 0.5050 2.0207 3.6995 33 1 0.6529 4.1178 5.0551 34 1 2.0716 3.4103 5.8645 35 1 2.1991 4.9994 5.0726 36 1 2.1073 5.1483 2.6669 37 1 0.6024 4.2002 2.5888 38 1 0.6113 4.1947 0.0382 39 1 1.9904 5.3063 0.2138 40 1 1.9933 4.2157 -1.9309 41 1 3.3059 3.6998 -1.0492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087613778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:48 Heat of formation + Delta-G solvation = 9.815905 kcal Electronic energy + Delta-G solvation = -19479.015910 eV Core-core repulsion = 16814.627485 eV Total energy + Delta-G solvation = -2664.388425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52304 -37.38835 -35.45085 -34.08232 -32.62181 -31.26440 -29.54139 -27.39403 -25.82944 -24.73358 -24.29265 -22.11639 -21.18820 -20.34810 -17.86406 -17.25392 -16.42445 -16.34398 -16.10379 -15.76667 -15.32267 -15.21109 -14.90225 -14.46572 -14.37248 -13.55586 -13.17747 -13.12788 -12.98662 -12.97436 -12.87408 -12.68301 -12.47560 -12.27287 -12.00734 -11.79975 -11.78206 -11.42097 -11.19070 -10.96502 -10.66606 -10.19893 -9.21782 -8.74497 -8.51325 -7.74217 -5.86396 1.39860 1.45600 1.50263 2.55508 3.07800 3.44278 3.56265 3.91553 4.18552 4.29283 4.37205 4.53623 4.57682 4.64087 4.69113 4.71713 4.74864 4.81238 4.85530 4.89089 4.97803 5.02906 5.03794 5.18001 5.28389 5.45414 5.48070 5.65000 5.71795 5.87589 6.09008 6.16281 6.24198 6.50423 6.59559 6.64193 6.71587 6.96916 7.04267 7.36394 7.76305 9.20675 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.009311 C = 0.008700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.172573 B = 3006.396679 C = 3217.691514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.205 3.795 4 H 0.096 0.904 5 C -0.498 4.498 6 H 0.027 0.973 7 C 0.034 3.966 8 N -0.903 5.903 9 Si 0.918 3.082 10 H -0.294 1.294 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.521 5.521 14 C 0.060 3.940 15 C 0.068 3.932 16 N -0.562 5.562 17 C 0.029 3.971 18 C 0.072 3.928 19 C 0.094 3.906 20 H 0.018 0.982 21 C 0.084 3.916 22 N -0.824 5.824 23 H 0.051 0.949 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.017 0.983 28 H 0.250 0.750 29 H 0.067 0.933 30 H 0.007 0.993 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.328 0.672 41 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 7.537 8.971 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.098 3.902 4 H 0.113 0.887 5 C -0.538 4.538 6 H 0.045 0.955 7 C -0.164 4.164 8 N -0.544 5.544 9 Si 0.748 3.252 10 H -0.221 1.221 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.246 5.246 14 C -0.069 4.069 15 C -0.061 4.061 16 N -0.287 5.287 17 C -0.119 4.119 18 C -0.057 4.057 19 C -0.016 4.016 20 H 0.036 0.964 21 C -0.048 4.048 22 N -0.354 5.354 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.141 0.859 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.376 6.805 8.991 12.492 hybrid contribution 1.969 0.461 -0.454 2.073 sum -3.406 7.267 8.537 11.717 Atomic orbital electron populations 1.21522 0.96864 0.99025 1.00418 1.21705 0.94081 1.00613 0.99493 1.19844 0.91708 0.89889 0.88727 0.88716 1.21652 0.94317 1.34824 1.03013 0.95500 1.25185 0.98676 0.96338 0.96242 1.69986 1.34589 1.40147 1.09689 0.86217 0.85103 0.77476 0.76428 1.22072 1.21603 1.20412 1.62736 1.57331 1.01344 1.03183 1.21992 0.96759 0.97290 0.90898 1.22128 0.97138 0.89322 0.97477 1.62091 1.60454 1.02909 1.03214 1.22369 0.98660 0.99906 0.90919 1.22100 0.97949 0.96471 0.89199 1.21479 0.96158 0.90389 0.93592 0.96415 1.21600 0.99192 0.94206 0.89794 1.59008 1.14031 1.58875 1.03495 0.93034 0.94683 0.94490 0.92245 0.96416 0.94014 0.91464 0.97439 0.90037 0.94427 0.95246 0.90757 0.90670 0.89927 0.94282 0.91491 0.94811 0.85905 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.80 71.98 0.71 -4.21 16 2 C -0.12 -5.77 4.85 30.60 0.15 -5.62 16 3 C 0.21 9.72 1.25 44.17 0.06 9.77 16 4 H 0.10 4.85 5.32 -2.39 -0.01 4.84 16 5 C -0.50 -25.85 5.11 25.60 0.13 -25.72 16 6 H 0.03 1.48 5.80 -2.91 -0.02 1.46 16 7 C 0.03 1.82 5.29 84.65 0.45 2.27 16 8 N -0.90 -50.41 11.29 21.45 0.24 -50.16 16 9 Si 0.92 43.75 29.54 68.60 2.03 45.77 16 10 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 N -0.52 -21.33 4.03 -849.75 -3.42 -24.76 16 14 C 0.06 2.36 4.89 86.31 0.42 2.78 16 15 C 0.07 2.12 5.62 86.31 0.49 2.61 16 16 N -0.56 -16.95 4.97 -921.90 -4.58 -21.53 16 17 C 0.03 0.64 9.60 127.69 1.23 1.87 16 18 C 0.07 2.17 4.90 86.31 0.42 2.59 16 19 C 0.09 3.49 1.96 44.92 0.09 3.57 16 20 H 0.02 0.79 6.42 -2.39 -0.02 0.78 16 21 C 0.08 2.81 6.12 86.30 0.53 3.34 16 22 N -0.82 -31.26 5.60 -186.71 -1.05 -32.30 16 23 H 0.05 1.98 7.75 -2.39 -0.02 1.96 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 3.24 5.95 -2.39 -0.01 3.23 16 27 H 0.02 0.84 5.96 -2.39 -0.01 0.82 16 28 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 29 H 0.07 2.72 5.91 -2.39 -0.01 2.70 16 30 H 0.01 0.34 6.99 -2.39 -0.02 0.32 16 31 H 0.08 2.28 8.13 -2.39 -0.02 2.26 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 1.48 8.13 -2.38 -0.02 1.46 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.33 10.86 9.08 -89.70 -0.81 10.04 16 41 H 0.34 14.07 7.69 -89.69 -0.69 13.38 16 Total: -1.00 -57.50 300.86 -2.61 -60.12 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.49 Total: 29.61 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 4.66 Total: -6.75 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -8.81 Total: -128.75 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -57.50 -2.61 -60.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087613778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.931 kcal (2) G-P(sol) polarization free energy of solvation -57.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds