Wall clock time and date at job start Mon Mar 30 2020 05:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00256 * 2 1 4 4 H 1.48493 * 109.47197 * 240.00294 * 3 2 1 5 5 H 1.48503 * 109.46507 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47094 * 119.99679 * 3 2 1 7 7 C 1.37881 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47233 * 179.97438 * 9 7 2 11 11 C 1.38238 * 119.99361 * 90.00415 * 10 9 7 12 12 C 1.38238 * 119.99679 * 180.02562 * 11 10 9 13 13 C 1.38232 * 120.00003 * 0.02562 * 12 11 10 14 14 S 1.76205 * 119.99989 * 179.97438 * 13 12 11 15 15 O 1.42096 * 106.40158 * 336.45862 * 14 13 12 16 16 O 1.42102 * 106.40192 * 203.53776 * 14 13 12 17 17 O 1.52197 * 107.21747 * 90.00223 * 14 13 12 18 18 C 1.38236 * 120.00160 * 0.25052 * 13 12 11 19 19 C 1.38232 * 120.00321 * 270.02477 * 10 9 7 20 20 H 0.96995 * 119.99788 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.46923 * 60.00072 * 9 7 2 22 22 H 1.09000 * 109.47505 * 300.00237 * 9 7 2 23 23 H 1.07999 * 120.00406 * 359.97438 * 11 10 9 24 24 H 1.08000 * 119.99898 * 179.97438 * 12 11 10 25 25 H 0.96700 * 114.00082 * 180.02562 * 17 14 13 26 26 H 1.07998 * 120.00051 * 179.72903 * 18 13 12 27 27 H 1.07999 * 120.00049 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6803 -4.1704 1.1949 12 6 3.5790 -5.2208 1.1938 13 6 4.0282 -5.7449 -0.0039 14 16 5.1743 -7.0833 -0.0053 15 8 5.8492 -7.0349 1.2442 16 8 5.8483 -7.0331 -1.2552 17 8 4.3630 -8.3711 -0.0060 18 6 3.5826 -5.2153 -1.2005 19 6 2.6790 -4.1691 -1.1995 20 1 -0.4849 0.8400 -0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6247 -2.5572 0.8896 23 1 2.3304 -3.7602 2.1306 24 1 3.9309 -5.6314 2.1287 25 1 4.9008 -9.1747 -0.0064 26 1 3.9369 -5.6219 -2.1362 27 1 2.3274 -3.7583 -2.1343 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117669174.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:11 Heat of formation + Delta-G solvation = -111.468665 kcal Electronic energy + Delta-G solvation = -14755.988207 eV Core-core repulsion = 11991.582663 eV Total energy + Delta-G solvation = -2764.405544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.85705 -38.38051 -37.24282 -35.91429 -33.70400 -31.59959 -30.60617 -27.48880 -23.82578 -22.38432 -21.58926 -20.49127 -18.42578 -17.98159 -16.47115 -16.37831 -15.64192 -14.92596 -14.73130 -14.38629 -13.71374 -13.24466 -13.12356 -12.88685 -12.41193 -12.22531 -12.14547 -12.00282 -11.74111 -11.49909 -11.00447 -10.91458 -10.54239 -10.49346 -9.77883 -9.66426 -8.61374 -8.54416 -8.43500 -6.17790 -4.23093 0.46280 1.26690 1.77630 3.07862 3.25810 3.30020 3.33478 3.42111 4.08143 4.36703 4.60150 5.15694 5.22009 5.22874 5.68897 5.76232 5.80614 5.88848 6.21418 6.30310 6.47898 6.81056 6.88656 7.27348 7.40761 7.57245 7.76955 8.11953 8.81375 9.41862 10.92248 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.050619 B = 0.005209 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.022256 B = 5374.100707 C = 5456.659098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.030 3.970 11 C -0.147 4.147 12 C -0.020 4.020 13 C -0.697 4.697 14 S 2.720 3.280 15 O -0.978 6.978 16 O -0.978 6.978 17 O -0.893 6.893 18 C -0.020 4.020 19 C -0.147 4.147 20 H 0.265 0.735 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.131 0.869 24 H 0.133 0.867 25 H 0.454 0.546 26 H 0.133 0.867 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -14.597 -0.011 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.002 3.998 10 C 0.029 3.971 11 C -0.166 4.166 12 C -0.040 4.040 13 C -0.787 4.787 14 S 2.813 3.187 15 O -0.976 6.976 16 O -0.976 6.976 17 O -0.761 6.761 18 C -0.039 4.039 19 C -0.166 4.166 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.149 0.851 24 H 0.151 0.849 25 H 0.321 0.679 26 H 0.151 0.849 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.559 -14.535 -0.011 15.946 hybrid contribution 0.199 1.187 0.002 1.203 sum 6.758 -13.348 -0.010 14.961 Atomic orbital electron populations 1.69933 1.06081 1.27270 1.49672 1.25005 0.94936 0.99402 0.94774 0.86521 0.79497 0.82379 0.78885 1.20027 1.21107 1.20035 1.20930 0.93080 0.89443 1.52251 0.92295 1.18552 0.92645 0.89462 0.99134 1.21172 0.91957 0.91857 0.92089 1.21264 0.99108 0.97241 0.98990 1.20833 0.92904 0.94424 0.95796 1.29808 1.25558 1.23156 1.00141 1.00381 0.71713 0.73497 0.73112 1.93598 1.72247 1.86403 1.45377 1.93599 1.72284 1.86403 1.45338 1.85597 1.61542 1.33823 1.95125 1.20834 0.92904 0.94397 0.95814 1.21263 0.99048 0.97312 0.98979 0.92545 0.94629 0.94628 0.85148 0.84915 0.67878 0.84907 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 15 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.52 -14.05 9.09 -34.44 -0.31 -14.36 15 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 15 9 C 0.04 0.95 5.10 -29.04 -0.15 0.80 15 10 C 0.03 0.61 5.07 -104.62 -0.53 0.08 15 11 C -0.15 -2.74 9.70 -39.58 -0.38 -3.12 15 12 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 15 13 C -0.70 -10.82 5.96 -39.58 -0.24 -11.05 15 14 S 2.72 32.69 5.96 -107.50 -0.64 32.05 15 15 O -0.98 -14.07 17.27 -66.81 -1.15 -15.22 15 16 O -0.98 -14.07 17.27 -66.81 -1.15 -15.22 15 17 O -0.89 -7.55 13.45 -67.36 -0.91 -8.45 15 18 C -0.02 -0.33 9.52 -39.58 -0.38 -0.70 15 19 C -0.15 -2.74 9.70 -39.58 -0.38 -3.12 15 20 H 0.26 7.17 8.31 -40.82 -0.34 6.84 15 21 H 0.04 0.90 8.09 -51.92 -0.42 0.48 15 22 H 0.04 0.91 8.09 -51.93 -0.42 0.49 15 23 H 0.13 2.29 8.06 -52.49 -0.42 1.86 15 24 H 0.13 1.82 7.62 -52.49 -0.40 1.42 15 25 H 0.45 1.10 9.03 67.38 0.61 1.71 15 26 H 0.13 1.83 7.61 -52.49 -0.40 1.43 15 27 H 0.13 2.29 8.06 -52.49 -0.42 1.86 15 LS Contribution 259.83 15.07 3.92 3.92 Total: -1.00 -34.61 259.83 -8.49 -43.10 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -1.42 Total: -0.84 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: -2.85 Total: -30.61 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.74 Total: -24.77 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -3.21 Total: -38.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 32.69 SS G_CDS: -0.64 Total: 32.05 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.61 -8.49 -43.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117669174.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.368 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds