Wall clock time and date at job start Mon Mar 30 2020 05:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00256 * 2 1 4 4 H 1.48493 * 109.47197 * 240.00294 * 3 2 1 5 5 H 1.48503 * 109.46507 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47094 * 119.99679 * 3 2 1 7 7 C 1.37881 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47233 * 179.97438 * 9 7 2 11 11 C 1.38238 * 119.99361 * 90.00415 * 10 9 7 12 12 C 1.38238 * 119.99679 * 180.02562 * 11 10 9 13 13 C 1.38232 * 120.00003 * 0.02562 * 12 11 10 14 14 S 1.76205 * 119.99989 * 179.97438 * 13 12 11 15 15 O 1.42096 * 106.40158 * 336.45862 * 14 13 12 16 16 O 1.42102 * 106.40192 * 203.53776 * 14 13 12 17 17 O 1.52197 * 107.21747 * 90.00223 * 14 13 12 18 18 C 1.38236 * 120.00160 * 0.25052 * 13 12 11 19 19 C 1.38232 * 120.00321 * 270.02477 * 10 9 7 20 20 H 0.96995 * 119.99788 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.46923 * 60.00072 * 9 7 2 22 22 H 1.09000 * 109.47505 * 300.00237 * 9 7 2 23 23 H 1.07999 * 120.00406 * 359.97438 * 11 10 9 24 24 H 1.08000 * 119.99898 * 179.97438 * 12 11 10 25 25 H 0.96700 * 114.00082 * 180.02562 * 17 14 13 26 26 H 1.07998 * 120.00051 * 179.72903 * 18 13 12 27 27 H 1.07999 * 120.00049 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6803 -4.1704 1.1949 12 6 3.5790 -5.2208 1.1938 13 6 4.0282 -5.7449 -0.0039 14 16 5.1743 -7.0833 -0.0053 15 8 5.8492 -7.0349 1.2442 16 8 5.8483 -7.0331 -1.2552 17 8 4.3630 -8.3711 -0.0060 18 6 3.5826 -5.2153 -1.2005 19 6 2.6790 -4.1691 -1.1995 20 1 -0.4849 0.8400 -0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6247 -2.5572 0.8896 23 1 2.3304 -3.7602 2.1306 24 1 3.9309 -5.6314 2.1287 25 1 4.9008 -9.1747 -0.0064 26 1 3.9369 -5.6219 -2.1362 27 1 2.3274 -3.7583 -2.1343 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117669174.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:11 Heat of formation + Delta-G solvation = -138.117297 kcal Electronic energy + Delta-G solvation = -14757.143779 eV Core-core repulsion = 11991.582663 eV Total energy + Delta-G solvation = -2765.561116 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24719 -39.15773 -38.31333 -36.98593 -35.60595 -33.34117 -31.96482 -29.28127 -25.64433 -23.74773 -22.81972 -21.72519 -19.33697 -19.12440 -18.57471 -17.38677 -16.98824 -16.36259 -16.09732 -15.91289 -15.04767 -14.63135 -14.45229 -14.06837 -13.94112 -13.42398 -13.40979 -13.30423 -13.21404 -13.09703 -12.67706 -12.65317 -12.15274 -12.03871 -11.70368 -11.42090 -10.65422 -9.98772 -9.96648 -8.27318 -6.40462 -0.53418 -0.07256 0.39698 1.38876 1.40724 1.49195 2.16446 2.36753 2.41890 2.76165 3.05306 3.51859 3.94769 3.98779 4.15332 4.47243 4.52183 4.81062 4.91448 5.08985 5.24245 5.25101 5.31696 5.39799 5.66404 5.85283 5.91873 6.09049 6.71173 7.28681 8.82715 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.050619 B = 0.005209 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.022256 B = 5374.100707 C = 5456.659098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.004 4.004 11 C -0.159 4.159 12 C -0.019 4.019 13 C -0.701 4.701 14 S 2.776 3.224 15 O -0.995 6.995 16 O -0.995 6.995 17 O -0.883 6.883 18 C -0.019 4.019 19 C -0.159 4.159 20 H 0.268 0.732 21 H 0.013 0.987 22 H 0.013 0.987 23 H 0.131 0.869 24 H 0.162 0.838 25 H 0.480 0.520 26 H 0.162 0.838 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.490 -16.016 -0.013 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.011 3.989 10 C -0.005 4.005 11 C -0.178 4.178 12 C -0.038 4.038 13 C -0.788 4.788 14 S 2.865 3.135 15 O -0.994 6.994 16 O -0.994 6.994 17 O -0.757 6.757 18 C -0.038 4.038 19 C -0.178 4.178 20 H 0.076 0.924 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.149 0.851 24 H 0.179 0.821 25 H 0.354 0.646 26 H 0.179 0.821 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.473 -15.957 -0.012 18.067 hybrid contribution -0.359 1.427 0.002 1.471 sum 8.114 -14.530 -0.010 16.642 Atomic orbital electron populations 1.70049 1.07596 1.28252 1.50634 1.25889 0.95777 1.03044 0.94292 0.85485 0.78304 0.78034 0.79171 1.19307 1.20426 1.19319 1.21271 0.93121 0.90973 1.51959 0.92658 1.18273 0.93005 0.90795 0.96877 1.20880 0.93198 0.92294 0.94080 1.21341 1.00007 0.98236 0.98234 1.21142 0.91812 0.93297 0.97523 1.30525 1.24692 1.24088 0.99452 0.98914 0.69922 0.72703 0.71992 1.93579 1.72601 1.86735 1.46495 1.93580 1.72636 1.86736 1.46456 1.85513 1.61066 1.34249 1.94834 1.21143 0.91815 0.93273 0.97542 1.21339 0.99951 0.98299 0.98221 0.92354 0.96861 0.96858 0.85131 0.82060 0.64642 0.82059 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 13.29 21.45 0.28 -54.23 15 2 C 0.01 0.50 5.46 84.66 0.46 0.97 15 3 Si 0.97 43.58 29.54 68.60 2.03 45.60 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.54 -29.93 9.09 25.60 0.23 -29.69 15 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 15 9 C 0.05 2.45 5.10 29.10 0.15 2.60 15 10 C 0.00 -0.18 5.07 -19.87 -0.10 -0.28 15 11 C -0.16 -5.98 9.70 22.27 0.22 -5.76 15 12 C -0.02 -0.58 9.52 22.27 0.21 -0.37 15 13 C -0.70 -20.01 5.96 22.27 0.13 -19.88 15 14 S 2.78 56.46 5.96 -56.49 -0.34 56.12 15 15 O -1.00 -25.00 17.27 -118.78 -2.05 -27.05 15 16 O -1.00 -25.00 17.27 -118.78 -2.05 -27.05 15 17 O -0.88 -11.04 13.45 -118.26 -1.59 -12.63 15 18 C -0.02 -0.58 9.52 22.27 0.21 -0.37 15 19 C -0.16 -5.97 9.70 22.27 0.22 -5.76 15 20 H 0.27 14.80 8.31 -92.71 -0.77 14.03 15 21 H 0.01 0.72 8.09 -2.38 -0.02 0.70 15 22 H 0.01 0.72 8.09 -2.39 -0.02 0.70 15 23 H 0.13 4.71 8.06 -2.91 -0.02 4.69 15 24 H 0.16 3.97 7.62 -2.91 -0.02 3.95 15 25 H 0.48 0.03 9.03 -87.93 -0.79 -0.76 15 26 H 0.16 3.97 7.61 -2.91 -0.02 3.95 15 27 H 0.13 4.71 8.06 -2.91 -0.02 4.69 15 Total: -1.00 -74.77 259.83 -1.58 -76.35 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 0.40 Total: 1.43 kcal Atomic # 6 Polarization: -60.28 SS G_CDS: 1.73 Total: -58.54 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.28 Total: -54.23 kcal Atomic # 8 Polarization: -61.03 SS G_CDS: -5.69 Total: -66.73 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 56.46 SS G_CDS: -0.34 Total: 56.12 kcal Total: -74.77 -1.58 -76.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117669174.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.767 kcal (2) G-P(sol) polarization free energy of solvation -74.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds