Wall clock time and date at job start Mon Mar 30 2020 05:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48495 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46720 * 299.99697 * 3 2 1 6 6 H 1.48502 * 109.47232 * 59.99073 * 3 2 1 7 7 C 1.38700 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00214 * 180.02562 * 7 2 1 9 9 O 1.34816 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.35507 * 116.99874 * 185.05330 * 9 7 2 11 11 C 1.38794 * 120.15797 * 354.38563 * 10 9 7 12 12 C 1.38069 * 120.11102 * 179.70761 * 11 10 9 13 13 C 1.38516 * 120.43992 * 359.97438 * 12 11 10 14 14 C 1.37981 * 120.31598 * 0.05101 * 13 12 11 15 15 Cl 1.73604 * 120.06172 * 179.97438 * 14 13 12 16 16 C 1.39862 * 119.87657 * 359.93222 * 14 13 12 17 17 C 1.47322 * 120.21546 * 180.02562 * 16 14 13 18 18 O 1.21518 * 119.99877 * 269.97700 * 17 16 14 19 19 O 1.34762 * 120.00191 * 89.97329 * 17 16 14 20 20 H 0.97006 * 119.99869 * 0.02562 * 1 2 3 21 21 H 1.07995 * 119.94549 * 359.71997 * 11 10 9 22 22 H 1.08004 * 119.77780 * 180.02562 * 12 11 10 23 23 H 1.08000 * 119.84252 * 180.02562 * 13 12 11 24 24 H 0.96696 * 117.00325 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0087 -1.2012 0.0005 8 1 3.0886 -1.2012 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0685 -3.5028 0.1074 11 6 3.4549 -3.4400 0.0935 12 6 4.2018 -4.5955 0.2085 13 6 3.5770 -5.8249 0.3391 14 6 2.1998 -5.9081 0.3546 15 17 1.4236 -7.4523 0.5179 16 6 1.4303 -4.7459 0.2393 17 6 -0.0407 -4.8260 0.2555 18 8 -0.6530 -4.9662 -0.7847 19 8 -0.7071 -4.7439 1.4239 20 1 -0.4850 0.8401 -0.0004 21 1 3.9504 -2.4857 -0.0073 22 1 5.2804 -4.5404 0.1974 23 1 4.1707 -6.7226 0.4288 24 1 -1.6715 -4.8019 1.3843 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128040221.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:19 Heat of formation + Delta-G solvation = -123.079108 kcal Electronic energy + Delta-G solvation = -14879.923314 eV Core-core repulsion = 11977.137502 eV Total energy + Delta-G solvation = -2902.785812 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.018 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.61856 -40.40493 -38.62220 -37.32634 -37.08105 -34.42895 -32.33962 -30.80179 -27.55496 -25.69267 -23.51237 -22.44843 -20.11997 -19.57987 -18.92743 -17.86507 -17.21811 -16.64333 -15.95502 -15.86269 -15.69726 -15.61229 -14.76045 -14.40500 -14.03307 -13.68808 -13.09387 -12.85227 -12.76049 -12.59113 -12.23495 -12.16669 -12.07951 -11.92528 -11.35976 -10.89907 -9.93804 -9.27739 -8.55602 -6.26716 -0.03327 0.39388 0.87606 1.04457 1.37328 1.45418 1.56458 2.12698 2.13118 2.56980 2.99505 3.21581 4.02015 4.12567 4.19145 4.42701 4.53071 4.69343 4.98857 5.12728 5.35798 5.44162 5.45682 5.79813 5.87778 6.86743 6.88125 7.55629 8.66315 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.007974 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.678300 B = 3510.499622 C = 4223.181907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.025 2.975 4 H -0.241 1.241 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.420 4.420 8 H 0.120 0.880 9 O -0.215 6.215 10 C 0.160 3.840 11 C -0.230 4.230 12 C -0.023 4.023 13 C -0.178 4.178 14 C 0.039 3.961 15 Cl -0.057 7.057 16 C -0.218 4.218 17 C 0.556 3.444 18 O -0.542 6.542 19 O -0.503 6.503 20 H 0.275 0.725 21 H 0.147 0.853 22 H 0.181 0.819 23 H 0.172 0.828 24 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.455 -8.057 2.958 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.218 4.218 3 Si 0.844 3.156 4 H -0.163 1.163 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.495 4.495 8 H 0.137 0.863 9 O -0.119 6.119 10 C 0.106 3.894 11 C -0.249 4.249 12 C -0.041 4.041 13 C -0.196 4.196 14 C 0.012 3.988 15 Cl -0.028 7.028 16 C -0.222 4.222 17 C 0.400 3.600 18 O -0.432 6.432 19 O -0.316 6.316 20 H 0.085 0.915 21 H 0.165 0.835 22 H 0.198 0.802 23 H 0.190 0.810 24 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 8.201 -8.023 2.700 11.786 hybrid contribution -1.172 0.630 -0.127 1.337 sum 7.028 -7.393 2.573 10.520 Atomic orbital electron populations 1.70196 1.08418 1.29239 1.47091 1.26765 0.96826 1.03132 0.95075 0.84438 0.78712 0.74092 0.78394 1.16336 1.19696 1.19448 1.22101 0.93172 0.80353 1.53883 0.86324 1.83898 1.36450 1.12781 1.78797 1.19481 0.91937 0.85810 0.92178 1.21467 0.91383 1.01848 1.10187 1.21461 1.01715 0.89509 0.91378 1.21062 0.90240 1.00423 1.07919 1.20595 0.93402 0.84069 1.00722 1.98346 1.81671 1.26855 1.95919 1.18011 0.89185 0.92804 1.22163 1.20730 0.88949 0.69503 0.80827 1.90807 1.70483 1.47050 1.34890 1.84657 1.28096 1.84293 1.34536 0.91543 0.83517 0.80193 0.81037 0.71534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.62 13.67 21.62 0.30 -54.32 14 2 C -0.02 -1.02 5.49 84.85 0.47 -0.55 14 3 Si 1.03 40.19 29.55 68.60 2.03 42.22 14 4 H -0.24 -8.35 7.11 99.48 0.71 -7.65 14 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 14 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 14 7 C -0.42 -22.93 9.49 67.93 0.64 -22.29 14 8 H 0.12 5.64 5.21 -2.91 -0.02 5.62 14 9 O -0.21 -12.48 9.21 -19.94 -0.18 -12.66 14 10 C 0.16 7.65 6.66 22.92 0.15 7.80 14 11 C -0.23 -8.67 9.16 22.36 0.20 -8.46 14 12 C -0.02 -0.62 10.03 22.30 0.22 -0.40 14 13 C -0.18 -4.93 9.81 22.27 0.22 -4.71 14 14 C 0.04 1.39 6.35 22.60 0.14 1.53 14 15 Cl -0.06 -1.77 28.04 -2.72 -0.08 -1.84 14 16 C -0.22 -9.73 5.77 -19.98 -0.12 -9.84 14 17 C 0.56 25.80 6.36 70.21 0.45 26.25 14 18 O -0.54 -27.65 17.89 19.78 0.35 -27.30 14 19 O -0.50 -19.94 13.44 -56.73 -0.76 -20.70 14 20 H 0.28 15.05 8.31 -92.70 -0.77 14.28 14 21 H 0.15 5.30 5.64 -2.91 -0.02 5.29 14 22 H 0.18 3.10 8.06 -2.91 -0.02 3.07 14 23 H 0.17 3.35 8.06 -2.91 -0.02 3.32 14 24 H 0.42 12.20 9.11 -74.06 -0.67 11.53 14 Total: -1.00 -73.70 246.62 4.64 -69.06 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.60 Total: 16.23 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 2.38 Total: -10.68 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.30 Total: -54.32 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -0.59 Total: -60.66 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.84 kcal Total: -73.70 4.64 -69.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128040221.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.019 kcal (2) G-P(sol) polarization free energy of solvation -73.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds