Wall clock time and date at job start Mon Mar 30 2020 03:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00398 * 2 1 4 4 C 1.53002 * 109.46832 * 293.95866 * 3 2 1 5 5 C 1.53001 * 109.47002 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47406 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99464 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00257 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99835 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99906 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47545 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47333 * 119.99510 * 10 8 6 13 13 H 1.48505 * 109.46831 * 239.99137 * 10 8 6 14 14 C 1.46899 * 111.00118 * 123.95737 * 2 1 3 15 15 H 1.09002 * 109.47043 * 296.04347 * 14 2 1 16 16 C 1.52997 * 109.47254 * 176.04276 * 14 2 1 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 14 2 18 18 C 1.53002 * 109.47106 * 60.00162 * 17 16 14 19 19 C 1.53002 * 109.47128 * 300.00123 * 18 17 16 20 20 C 1.52997 * 109.46978 * 59.99726 * 19 18 17 21 21 H 1.09000 * 109.47140 * 180.02562 * 20 19 18 22 22 O 1.42895 * 109.47267 * 60.00316 * 20 19 18 23 23 H 1.09002 * 109.46987 * 296.04599 * 1 2 3 24 24 H 1.09004 * 109.47461 * 56.04278 * 1 2 3 25 25 H 1.08999 * 109.47654 * 176.04709 * 1 2 3 26 26 H 1.08997 * 109.46547 * 53.95609 * 3 2 1 27 27 H 1.09000 * 109.47275 * 173.95928 * 3 2 1 28 28 H 1.08997 * 109.47060 * 299.99724 * 4 3 2 29 29 H 1.08999 * 109.47436 * 59.99529 * 4 3 2 30 30 H 1.09007 * 109.46981 * 299.99862 * 5 4 3 31 31 H 1.08999 * 109.47419 * 59.99508 * 5 4 3 32 32 H 0.96996 * 120.00071 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47153 * 300.00004 * 16 14 2 34 34 H 1.08998 * 109.47533 * 59.99633 * 16 14 2 35 35 H 1.09002 * 109.47103 * 300.00247 * 17 16 14 36 36 H 1.08996 * 109.47747 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47407 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.47596 * 60.00070 * 18 17 16 39 39 H 1.09002 * 109.47097 * 299.99925 * 19 18 17 40 40 H 1.08998 * 109.47844 * 180.02562 * 19 18 17 41 41 H 0.96696 * 114.00034 * 59.99763 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1803 3.4856 -1.3186 6 6 1.8212 4.1616 -2.6167 7 1 1.2582 3.6259 -3.3667 8 6 2.2124 5.4634 -2.8473 9 7 2.8985 6.1154 -1.9343 10 14 1.7678 6.3009 -4.4567 11 1 0.9996 5.3588 -5.3095 12 1 0.9415 7.5029 -4.1775 13 1 3.0096 6.7071 -5.1628 14 6 1.9954 -0.7660 1.1375 15 1 1.7044 -0.2800 2.0687 16 6 3.5216 -0.8265 1.0491 17 6 4.0700 -1.6238 2.2341 18 6 3.5007 -3.0435 2.2009 19 6 1.9744 -2.9831 2.2893 20 6 1.4260 -2.1858 1.1043 21 1 0.3387 -2.1424 1.1675 22 8 1.8075 -2.8235 -0.1163 23 1 -0.3633 0.4513 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5612 1.9272 0.8309 27 1 3.0798 1.3443 0.1081 28 1 2.0657 1.5015 -2.1492 29 1 0.5471 2.0845 -1.4265 30 1 1.7464 4.0418 -0.4875 31 1 3.2646 3.4581 -1.2105 32 1 3.1734 7.0314 -2.0963 33 1 3.8126 -1.3126 0.1179 34 1 3.9274 0.1849 1.0732 35 1 3.7790 -1.1373 3.1651 36 1 5.1573 -1.6672 2.1709 37 1 3.8910 -3.6114 3.0453 38 1 3.7916 -3.5300 1.2699 39 1 1.6834 -2.4967 3.2203 40 1 1.5687 -3.9945 2.2661 41 1 1.4804 -3.7290 -0.2059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166625653.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:24 Heat of formation + Delta-G solvation = -70.359027 kcal Electronic energy + Delta-G solvation = -18054.268748 eV Core-core repulsion = 15354.110926 eV Total energy + Delta-G solvation = -2700.157822 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.71016 -36.57719 -34.94815 -33.52259 -31.36900 -30.36882 -28.87401 -27.01620 -24.95689 -22.96707 -22.14588 -20.91016 -19.75317 -19.61715 -16.88475 -16.32580 -16.14131 -15.00137 -14.79452 -14.65081 -14.35598 -13.87112 -13.66767 -13.37263 -12.97260 -12.56246 -12.28660 -12.17256 -11.84197 -11.64949 -11.33653 -11.25529 -11.14969 -10.82222 -10.77221 -10.59334 -10.50478 -10.33383 -9.96923 -9.67799 -9.48142 -9.23464 -8.97020 -8.28776 -7.89231 -5.94145 -3.95649 3.35130 3.42283 3.47354 4.06786 4.27818 4.52165 4.61349 4.75958 4.84614 5.11482 5.20197 5.32037 5.37219 5.41702 5.43754 5.50733 5.63371 5.68835 5.75098 5.81958 5.89695 6.02169 6.04158 6.10263 6.16847 6.21675 6.25793 6.45603 6.56556 6.80665 6.89686 7.22400 7.48979 7.51932 7.73039 7.76113 7.91630 8.07200 8.51199 9.11916 9.68069 11.17472 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.045178 B = 0.004334 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.623757 B = 6458.935402 C = 6757.317540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.528 5.528 3 C 0.051 3.949 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.515 4.515 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.094 3.906 15 H 0.044 0.956 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.152 4.152 20 C 0.112 3.888 21 H 0.052 0.948 22 O -0.541 6.541 23 H 0.017 0.983 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -18.898 9.840 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.251 5.251 3 C -0.075 4.075 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.015 4.015 15 H 0.061 0.939 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.190 4.190 20 C 0.052 3.948 21 H 0.069 0.931 22 O -0.344 6.344 23 H 0.035 0.965 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.361 -18.368 9.338 20.650 hybrid contribution -0.834 0.485 0.132 0.974 sum -2.195 -17.883 9.470 20.355 Atomic orbital electron populations 1.22436 0.88242 1.01269 1.00642 1.62021 1.07126 1.14534 1.41444 1.22393 0.99972 0.86241 0.98944 1.21638 0.99929 0.98035 0.94540 1.19084 0.96216 0.89434 0.96905 1.21307 1.34433 0.97558 1.02091 0.92637 1.25027 0.95288 0.97529 0.96715 1.69979 1.38545 1.11216 1.33976 0.86551 0.78159 0.79440 0.83953 1.19719 1.21098 1.21039 1.21591 0.95880 0.91699 0.92287 0.93862 1.21570 0.93643 1.00538 0.99245 1.21531 1.00131 0.95464 0.98473 1.21441 0.94564 0.97262 1.01901 1.22270 0.97238 1.00296 0.99243 1.21813 0.96748 0.92254 0.83944 0.93062 1.86709 1.78484 1.30660 1.38577 0.96482 0.90619 0.92016 0.95720 0.90840 0.92591 0.93558 0.96923 0.96638 0.93163 0.90084 0.91541 0.92466 0.91795 0.92520 0.91188 0.91383 0.91827 0.78964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.91 60.06 0.54 0.86 16 2 N -0.53 -8.59 4.50 -234.89 -1.06 -9.65 16 3 C 0.05 0.96 4.77 -3.82 -0.02 0.94 16 4 C -0.10 -2.28 5.08 -26.73 -0.14 -2.42 16 5 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 6 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 7 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 8 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 10 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.09 1.28 1.73 -67.71 -0.12 1.16 16 15 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 16 C -0.11 -1.50 4.85 -26.74 -0.13 -1.63 16 17 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 18 C -0.11 -1.05 5.78 -26.73 -0.15 -1.21 16 19 C -0.15 -1.34 5.64 -26.73 -0.15 -1.49 16 20 C 0.11 1.24 2.74 -26.73 -0.07 1.17 16 21 H 0.05 0.55 6.35 -51.93 -0.33 0.22 16 22 O -0.54 -6.38 11.84 -35.23 -0.42 -6.80 16 23 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.08 1.19 6.30 -51.93 -0.33 0.87 16 25 H 0.06 0.80 6.24 -51.93 -0.32 0.47 16 26 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.07 1.37 5.83 -51.93 -0.30 1.07 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.05 1.00 6.47 -51.93 -0.34 0.66 16 30 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.08 1.22 7.68 -51.93 -0.40 0.82 16 34 H 0.07 0.95 6.20 -51.93 -0.32 0.63 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.69 7.68 -51.93 -0.40 0.29 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.37 2.72 9.08 45.56 0.41 3.13 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -31.95 312.86 -8.51 -40.47 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.52 Total: -1.54 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.95 Total: -17.48 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.32 Total: -36.52 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.42 Total: -6.80 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.95 -8.51 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166625653.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.894 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds