Wall clock time and date at job start Mon Mar 30 2020 03:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00398 * 2 1 4 4 C 1.53002 * 109.46832 * 293.95866 * 3 2 1 5 5 C 1.53001 * 109.47002 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47406 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99464 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00257 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99835 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99906 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47545 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47333 * 119.99510 * 10 8 6 13 13 H 1.48505 * 109.46831 * 239.99137 * 10 8 6 14 14 C 1.46899 * 111.00118 * 123.95737 * 2 1 3 15 15 H 1.09002 * 109.47043 * 296.04347 * 14 2 1 16 16 C 1.52997 * 109.47254 * 176.04276 * 14 2 1 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 14 2 18 18 C 1.53002 * 109.47106 * 60.00162 * 17 16 14 19 19 C 1.53002 * 109.47128 * 300.00123 * 18 17 16 20 20 C 1.52997 * 109.46978 * 59.99726 * 19 18 17 21 21 H 1.09000 * 109.47140 * 180.02562 * 20 19 18 22 22 O 1.42895 * 109.47267 * 60.00316 * 20 19 18 23 23 H 1.09002 * 109.46987 * 296.04599 * 1 2 3 24 24 H 1.09004 * 109.47461 * 56.04278 * 1 2 3 25 25 H 1.08999 * 109.47654 * 176.04709 * 1 2 3 26 26 H 1.08997 * 109.46547 * 53.95609 * 3 2 1 27 27 H 1.09000 * 109.47275 * 173.95928 * 3 2 1 28 28 H 1.08997 * 109.47060 * 299.99724 * 4 3 2 29 29 H 1.08999 * 109.47436 * 59.99529 * 4 3 2 30 30 H 1.09007 * 109.46981 * 299.99862 * 5 4 3 31 31 H 1.08999 * 109.47419 * 59.99508 * 5 4 3 32 32 H 0.96996 * 120.00071 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47153 * 300.00004 * 16 14 2 34 34 H 1.08998 * 109.47533 * 59.99633 * 16 14 2 35 35 H 1.09002 * 109.47103 * 300.00247 * 17 16 14 36 36 H 1.08996 * 109.47747 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47407 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.47596 * 60.00070 * 18 17 16 39 39 H 1.09002 * 109.47097 * 299.99925 * 19 18 17 40 40 H 1.08998 * 109.47844 * 180.02562 * 19 18 17 41 41 H 0.96696 * 114.00034 * 59.99763 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1803 3.4856 -1.3186 6 6 1.8212 4.1616 -2.6167 7 1 1.2582 3.6259 -3.3667 8 6 2.2124 5.4634 -2.8473 9 7 2.8985 6.1154 -1.9343 10 14 1.7678 6.3009 -4.4567 11 1 0.9996 5.3588 -5.3095 12 1 0.9415 7.5029 -4.1775 13 1 3.0096 6.7071 -5.1628 14 6 1.9954 -0.7660 1.1375 15 1 1.7044 -0.2800 2.0687 16 6 3.5216 -0.8265 1.0491 17 6 4.0700 -1.6238 2.2341 18 6 3.5007 -3.0435 2.2009 19 6 1.9744 -2.9831 2.2893 20 6 1.4260 -2.1858 1.1043 21 1 0.3387 -2.1424 1.1675 22 8 1.8075 -2.8235 -0.1163 23 1 -0.3633 0.4513 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5612 1.9272 0.8309 27 1 3.0798 1.3443 0.1081 28 1 2.0657 1.5015 -2.1492 29 1 0.5471 2.0845 -1.4265 30 1 1.7464 4.0418 -0.4875 31 1 3.2646 3.4581 -1.2105 32 1 3.1734 7.0314 -2.0963 33 1 3.8126 -1.3126 0.1179 34 1 3.9274 0.1849 1.0732 35 1 3.7790 -1.1373 3.1651 36 1 5.1573 -1.6672 2.1709 37 1 3.8910 -3.6114 3.0453 38 1 3.7916 -3.5300 1.2699 39 1 1.6834 -2.4967 3.2203 40 1 1.5687 -3.9945 2.2661 41 1 1.4804 -3.7290 -0.2059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166625653.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:22 Heat of formation + Delta-G solvation = -92.627865 kcal Electronic energy + Delta-G solvation = -18055.234398 eV Core-core repulsion = 15354.110926 eV Total energy + Delta-G solvation = -2701.123471 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.70457 -37.84120 -35.88190 -35.49932 -33.28793 -31.25852 -30.02569 -28.65976 -26.53329 -24.41796 -23.25146 -22.17916 -21.38996 -20.59267 -18.47464 -17.77213 -17.26765 -16.53770 -16.17653 -16.02441 -15.57081 -15.13395 -14.90709 -14.52874 -14.27955 -13.92939 -13.70944 -13.53110 -13.13085 -13.03923 -12.79944 -12.63214 -12.52944 -12.34987 -12.16330 -12.06633 -11.73346 -11.48691 -11.44255 -11.36553 -11.08891 -10.76507 -10.56061 -10.51536 -9.18038 -8.20716 -6.31900 1.39315 1.40050 1.53882 2.40712 2.91712 3.12188 3.41396 3.77704 3.90853 4.00282 4.17421 4.22398 4.24364 4.34098 4.43113 4.49393 4.57742 4.58057 4.66813 4.70725 4.85881 4.91340 4.93486 5.00556 5.05231 5.10265 5.23315 5.23653 5.28744 5.29670 5.36823 5.51697 5.56969 5.73107 5.84747 6.11805 6.26382 6.29326 6.84524 7.08464 7.37314 8.91622 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.045178 B = 0.004334 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.623757 B = 6458.935402 C = 6757.317540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.539 5.539 3 C 0.064 3.936 4 C -0.087 4.087 5 C 0.027 3.973 6 C -0.542 4.542 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.277 1.277 14 C 0.088 3.912 15 H 0.046 0.954 16 C -0.110 4.110 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.146 4.146 20 C 0.115 3.885 21 H 0.060 0.940 22 O -0.563 6.563 23 H 0.024 0.976 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.050 0.950 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.264 0.736 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.793 -20.385 9.967 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.262 5.262 3 C -0.064 4.064 4 C -0.125 4.125 5 C -0.011 4.011 6 C -0.580 4.580 7 H 0.076 0.924 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.791 3.209 11 H -0.187 1.187 12 H -0.201 1.201 13 H -0.202 1.202 14 C -0.020 4.020 15 H 0.064 0.936 16 C -0.148 4.148 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.184 4.184 20 C 0.056 3.944 21 H 0.078 0.922 22 O -0.370 6.370 23 H 0.043 0.957 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.276 -19.889 9.472 22.147 hybrid contribution -0.528 0.930 0.110 1.075 sum -2.804 -18.959 9.583 21.427 Atomic orbital electron populations 1.22459 0.87198 1.02497 1.00347 1.61974 1.08193 1.12730 1.43349 1.22093 0.99782 0.87829 0.96683 1.21378 0.99674 0.95254 0.96228 1.18971 0.94574 0.92093 0.95473 1.21704 1.34933 0.98399 1.03000 0.92412 1.25997 0.94871 0.98224 1.00747 1.70106 1.39319 1.11778 1.36226 0.85369 0.78191 0.78311 0.78995 1.18684 1.20136 1.20232 1.21751 0.95892 0.93174 0.91187 0.93587 1.21520 0.93883 0.99700 0.99683 1.21525 1.00401 0.96185 0.97237 1.21429 0.95035 0.96110 1.02331 1.22235 0.96671 1.01244 0.98226 1.21773 0.97057 0.90788 0.84797 0.92207 1.86660 1.78976 1.32313 1.39038 0.95726 0.92103 0.89809 0.96065 0.91405 0.93466 0.93152 0.99134 0.99130 0.92730 0.92135 0.93500 0.91769 0.91417 0.90621 0.91940 0.90694 0.89437 0.76742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 8.91 127.69 1.14 1.78 16 2 N -0.54 -17.39 4.50 -897.05 -4.04 -21.42 16 3 C 0.06 2.44 4.77 86.30 0.41 2.85 16 4 C -0.09 -3.96 5.08 30.60 0.16 -3.80 16 5 C 0.03 1.48 4.97 29.85 0.15 1.63 16 6 C -0.54 -32.37 9.11 25.60 0.23 -32.14 16 7 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 8 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 9 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 10 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 11 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 14 C 0.09 2.31 1.73 44.92 0.08 2.39 16 15 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 16 C -0.11 -2.94 4.85 30.59 0.15 -2.79 16 17 C -0.12 -2.29 5.92 30.59 0.18 -2.11 16 18 C -0.11 -1.78 5.78 30.60 0.18 -1.60 16 19 C -0.15 -2.09 5.64 30.59 0.17 -1.92 16 20 C 0.12 2.29 2.74 30.59 0.08 2.37 16 21 H 0.06 1.09 6.35 -2.39 -0.02 1.08 16 22 O -0.56 -12.23 11.84 -148.98 -1.76 -13.99 16 23 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 1.89 6.30 -2.38 -0.02 1.87 16 25 H 0.08 1.99 6.24 -2.39 -0.01 1.98 16 26 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 27 H 0.07 2.65 5.83 -2.39 -0.01 2.64 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 2.21 6.47 -2.39 -0.02 2.20 16 30 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.06 1.85 7.68 -2.39 -0.02 1.83 16 34 H 0.05 1.40 6.20 -2.39 -0.01 1.38 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.11 7.68 -2.39 -0.02 1.09 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.38 4.77 9.08 -74.06 -0.67 4.09 16 Total: -1.00 -69.15 312.86 0.22 -68.93 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.32 Total: 9.92 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 3.39 Total: -32.93 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -3.75 Total: -79.54 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.76 Total: -13.99 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -69.15 0.22 -68.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166625653.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.695 kcal (2) G-P(sol) polarization free energy of solvation -69.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds