Wall clock time and date at job start Mon Mar 30 2020 03:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99881 * 2 1 4 4 C 1.53005 * 109.46545 * 66.04789 * 3 2 1 5 5 C 1.53005 * 109.46755 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47294 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00185 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00124 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99924 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99917 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47149 * 90.00044 * 10 8 6 12 12 H 1.48499 * 109.46856 * 210.00078 * 10 8 6 13 13 H 1.48501 * 109.46818 * 329.99762 * 10 8 6 14 14 C 1.46894 * 110.99968 * 236.04810 * 2 1 3 15 15 H 1.09004 * 109.47388 * 312.78029 * 14 2 1 16 16 C 1.53004 * 109.47354 * 72.77908 * 14 2 1 17 17 C 1.53000 * 109.47464 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.46917 * 300.00104 * 17 16 14 19 19 C 1.52999 * 109.46905 * 60.00151 * 18 17 16 20 20 C 1.52997 * 109.47335 * 192.78060 * 14 2 1 21 21 H 1.09004 * 109.46857 * 300.00294 * 20 14 2 22 22 O 1.42899 * 109.47180 * 59.99639 * 20 14 2 23 23 H 1.09004 * 109.47336 * 177.72286 * 1 2 3 24 24 H 1.09005 * 109.47403 * 297.71609 * 1 2 3 25 25 H 1.09005 * 109.47550 * 57.71932 * 1 2 3 26 26 H 1.08995 * 109.47017 * 186.03978 * 3 2 1 27 27 H 1.08992 * 109.47526 * 306.05111 * 3 2 1 28 28 H 1.08999 * 109.47406 * 299.99692 * 4 3 2 29 29 H 1.08999 * 109.47346 * 60.00512 * 4 3 2 30 30 H 1.08999 * 109.47024 * 300.00063 * 5 4 3 31 31 H 1.09001 * 109.47228 * 59.99737 * 5 4 3 32 32 H 0.97000 * 119.99535 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47280 * 300.00260 * 16 14 2 34 34 H 1.09004 * 109.46774 * 59.99745 * 16 14 2 35 35 H 1.08994 * 109.47006 * 59.99675 * 17 16 14 36 36 H 1.08998 * 109.46869 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.47264 * 300.00047 * 18 17 16 38 38 H 1.08994 * 109.46963 * 179.97438 * 18 17 16 39 39 H 1.09001 * 109.46816 * 180.02562 * 19 18 17 40 40 H 1.08994 * 109.47244 * 59.99884 * 19 18 17 41 41 H 0.96701 * 113.99918 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0573 1.3184 5 6 2.1802 3.4856 1.3187 6 6 1.8212 4.1614 2.6168 7 1 1.2582 3.6258 3.3669 8 6 2.2122 5.4633 2.8475 9 7 2.8990 6.1151 1.9348 10 14 1.7678 6.3008 4.4571 11 1 2.8439 6.0633 5.4523 12 1 1.6166 7.7606 4.2302 13 1 0.4893 5.7443 4.9680 14 6 1.9954 -0.7659 -1.1376 15 1 1.4740 -1.7208 -1.2052 16 6 1.7795 0.0256 -2.4291 17 6 2.3284 -0.7718 -3.6138 18 6 3.8245 -1.0203 -3.4120 19 6 4.0404 -1.8119 -2.1206 20 6 3.4915 -1.0150 -0.9362 21 1 4.0129 -0.0601 -0.8685 22 8 3.6932 -1.7542 0.2700 23 1 -0.3634 -1.0269 -0.0408 24 1 -0.3634 0.4780 0.9098 25 1 -0.3634 0.5489 -0.8688 26 1 3.0796 1.3444 -0.1081 27 1 1.5611 1.9274 -0.8308 28 1 0.5471 2.0844 1.4266 29 1 2.0658 1.5015 2.1492 30 1 3.2645 3.4582 1.2106 31 1 1.7462 4.0418 0.4877 32 1 3.1738 7.0311 2.0970 33 1 0.7137 0.2031 -2.5726 34 1 2.3009 0.9805 -2.3614 35 1 1.8074 -1.7268 -3.6816 36 1 2.1749 -0.2077 -4.5338 37 1 4.3456 -0.0654 -3.3442 38 1 4.2155 -1.5888 -4.2558 39 1 5.1063 -1.9885 -1.9767 40 1 3.5194 -2.7669 -2.1884 41 1 4.6209 -1.9483 0.4619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166625765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:29 Heat of formation + Delta-G solvation = -73.857473 kcal Electronic energy + Delta-G solvation = -18166.524393 eV Core-core repulsion = 15466.214867 eV Total energy + Delta-G solvation = -2700.309526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.74788 -36.48056 -35.30750 -33.53218 -31.37697 -29.89104 -28.95224 -27.01201 -24.80613 -23.11412 -22.40969 -20.96827 -20.28889 -18.95065 -17.12885 -16.25919 -15.93461 -15.07043 -14.75167 -14.50335 -14.36501 -13.85900 -13.74463 -13.44040 -12.91715 -12.72365 -12.32253 -12.25550 -11.70008 -11.57090 -11.50352 -11.19271 -11.14949 -10.90534 -10.78898 -10.63097 -10.57004 -10.46539 -10.00366 -9.74122 -9.48299 -9.24859 -8.99569 -8.29349 -7.83497 -5.94987 -3.96458 3.35712 3.41424 3.45530 4.12527 4.22234 4.51060 4.61705 4.81649 4.90258 5.06171 5.15362 5.24033 5.31759 5.40900 5.42304 5.50558 5.63811 5.66191 5.75954 5.85985 5.90727 5.95134 5.99890 6.02795 6.05620 6.15561 6.23037 6.30277 6.45450 6.80218 6.88963 7.21612 7.47730 7.52387 7.74755 7.83883 7.90584 8.06224 8.50474 9.10843 9.67249 11.16598 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034606 B = 0.004701 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.917698 B = 5954.702093 C = 6009.660007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.526 5.526 3 C 0.054 3.946 4 C -0.105 4.105 5 C 0.022 3.978 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.095 3.905 15 H 0.080 0.920 16 C -0.154 4.154 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.151 4.151 20 C 0.114 3.886 21 H 0.057 0.943 22 O -0.549 6.549 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.029 0.971 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 -15.596 -10.993 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.248 5.248 3 C -0.073 4.073 4 C -0.142 4.142 5 C -0.015 4.015 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.014 4.014 15 H 0.098 0.902 16 C -0.194 4.194 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.189 4.189 20 C 0.054 3.946 21 H 0.074 0.926 22 O -0.353 6.353 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.190 -15.611 -10.549 18.842 hybrid contribution 0.172 0.976 -0.006 0.991 sum 0.362 -14.635 -10.555 18.047 Atomic orbital electron populations 1.22398 0.88015 1.00840 1.01152 1.62201 1.07230 1.14838 1.40549 1.22350 0.99437 0.86571 0.98957 1.21642 0.99969 0.98018 0.94618 1.19069 0.96117 0.89454 0.96884 1.21268 1.34526 0.97559 1.02082 0.92691 1.25024 0.95285 0.97508 0.96698 1.69967 1.38497 1.11294 1.34002 0.86606 0.78874 0.78577 0.84026 1.20670 1.21297 1.19878 1.21638 0.94062 0.97308 0.88399 0.90187 1.22256 1.01648 1.00230 0.95218 1.21498 0.95710 1.00199 0.98000 1.21500 0.96623 1.00465 0.97037 1.22285 1.01094 0.99922 0.95625 1.21788 0.95607 0.93669 0.83492 0.92557 1.86648 1.30184 1.76528 1.41893 0.92306 0.90729 0.96004 0.91525 0.95277 0.93533 0.92612 0.96757 0.96948 0.93110 0.91393 0.90891 0.92026 0.91888 0.91682 0.91842 0.91691 0.91300 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.99 60.06 0.54 0.90 16 2 N -0.53 -8.57 4.56 -234.88 -1.07 -9.64 16 3 C 0.05 0.99 3.81 -3.82 -0.01 0.98 16 4 C -0.10 -2.30 5.08 -26.73 -0.14 -2.43 16 5 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 6 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 7 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 10 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.10 1.29 1.87 -67.71 -0.13 1.16 16 15 H 0.08 1.08 7.93 -51.93 -0.41 0.66 16 16 C -0.15 -1.85 4.42 -26.73 -0.12 -1.97 16 17 C -0.12 -1.12 5.92 -26.73 -0.16 -1.27 16 18 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 19 C -0.15 -1.47 5.54 -26.76 -0.15 -1.62 16 20 C 0.11 1.45 2.79 -26.76 -0.07 1.38 16 21 H 0.06 0.79 6.47 -51.93 -0.34 0.45 16 22 O -0.55 -7.54 13.18 -35.23 -0.46 -8.01 16 23 H 0.06 0.76 7.98 -51.93 -0.41 0.35 16 24 H 0.07 1.16 6.58 -51.93 -0.34 0.82 16 25 H 0.02 0.30 6.97 -51.93 -0.36 -0.06 16 26 H 0.07 1.24 6.23 -51.93 -0.32 0.92 16 27 H 0.03 0.53 6.81 -51.93 -0.35 0.18 16 28 H 0.05 1.01 6.60 -51.93 -0.34 0.66 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.07 0.81 6.93 -51.93 -0.36 0.45 16 34 H 0.07 0.97 6.54 -51.93 -0.34 0.63 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.37 3.49 9.08 45.56 0.41 3.90 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -31.97 313.23 -8.56 -40.54 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.52 Total: -0.41 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -0.94 Total: -17.53 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.33 Total: -36.41 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.46 Total: -8.01 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.97 -8.56 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166625765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.322 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds