Wall clock time and date at job start Mon Mar 30 2020 03:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99881 * 2 1 4 4 C 1.53005 * 109.46545 * 66.04789 * 3 2 1 5 5 C 1.53005 * 109.46755 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47294 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00185 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00124 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99924 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99917 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47149 * 90.00044 * 10 8 6 12 12 H 1.48499 * 109.46856 * 210.00078 * 10 8 6 13 13 H 1.48501 * 109.46818 * 329.99762 * 10 8 6 14 14 C 1.46894 * 110.99968 * 236.04810 * 2 1 3 15 15 H 1.09004 * 109.47388 * 312.78029 * 14 2 1 16 16 C 1.53004 * 109.47354 * 72.77908 * 14 2 1 17 17 C 1.53000 * 109.47464 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.46917 * 300.00104 * 17 16 14 19 19 C 1.52999 * 109.46905 * 60.00151 * 18 17 16 20 20 C 1.52997 * 109.47335 * 192.78060 * 14 2 1 21 21 H 1.09004 * 109.46857 * 300.00294 * 20 14 2 22 22 O 1.42899 * 109.47180 * 59.99639 * 20 14 2 23 23 H 1.09004 * 109.47336 * 177.72286 * 1 2 3 24 24 H 1.09005 * 109.47403 * 297.71609 * 1 2 3 25 25 H 1.09005 * 109.47550 * 57.71932 * 1 2 3 26 26 H 1.08995 * 109.47017 * 186.03978 * 3 2 1 27 27 H 1.08992 * 109.47526 * 306.05111 * 3 2 1 28 28 H 1.08999 * 109.47406 * 299.99692 * 4 3 2 29 29 H 1.08999 * 109.47346 * 60.00512 * 4 3 2 30 30 H 1.08999 * 109.47024 * 300.00063 * 5 4 3 31 31 H 1.09001 * 109.47228 * 59.99737 * 5 4 3 32 32 H 0.97000 * 119.99535 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47280 * 300.00260 * 16 14 2 34 34 H 1.09004 * 109.46774 * 59.99745 * 16 14 2 35 35 H 1.08994 * 109.47006 * 59.99675 * 17 16 14 36 36 H 1.08998 * 109.46869 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.47264 * 300.00047 * 18 17 16 38 38 H 1.08994 * 109.46963 * 179.97438 * 18 17 16 39 39 H 1.09001 * 109.46816 * 180.02562 * 19 18 17 40 40 H 1.08994 * 109.47244 * 59.99884 * 19 18 17 41 41 H 0.96701 * 113.99918 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0573 1.3184 5 6 2.1802 3.4856 1.3187 6 6 1.8212 4.1614 2.6168 7 1 1.2582 3.6258 3.3669 8 6 2.2122 5.4633 2.8475 9 7 2.8990 6.1151 1.9348 10 14 1.7678 6.3008 4.4571 11 1 2.8439 6.0633 5.4523 12 1 1.6166 7.7606 4.2302 13 1 0.4893 5.7443 4.9680 14 6 1.9954 -0.7659 -1.1376 15 1 1.4740 -1.7208 -1.2052 16 6 1.7795 0.0256 -2.4291 17 6 2.3284 -0.7718 -3.6138 18 6 3.8245 -1.0203 -3.4120 19 6 4.0404 -1.8119 -2.1206 20 6 3.4915 -1.0150 -0.9362 21 1 4.0129 -0.0601 -0.8685 22 8 3.6932 -1.7542 0.2700 23 1 -0.3634 -1.0269 -0.0408 24 1 -0.3634 0.4780 0.9098 25 1 -0.3634 0.5489 -0.8688 26 1 3.0796 1.3444 -0.1081 27 1 1.5611 1.9274 -0.8308 28 1 0.5471 2.0844 1.4266 29 1 2.0658 1.5015 2.1492 30 1 3.2645 3.4582 1.2106 31 1 1.7462 4.0418 0.4877 32 1 3.1738 7.0311 2.0970 33 1 0.7137 0.2031 -2.5726 34 1 2.3009 0.9805 -2.3614 35 1 1.8074 -1.7268 -3.6816 36 1 2.1749 -0.2077 -4.5338 37 1 4.3456 -0.0654 -3.3442 38 1 4.2155 -1.5888 -4.2558 39 1 5.1063 -1.9885 -1.9767 40 1 3.5194 -2.7669 -2.1884 41 1 4.6209 -1.9483 0.4619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166625765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:27 Heat of formation + Delta-G solvation = -96.314289 kcal Electronic energy + Delta-G solvation = -18167.498194 eV Core-core repulsion = 15466.214867 eV Total energy + Delta-G solvation = -2701.283327 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.80263 -37.72632 -36.32831 -35.50278 -33.28795 -30.83269 -30.00835 -28.80536 -26.30830 -24.62881 -23.43546 -22.22247 -21.76224 -20.17064 -18.43969 -18.11939 -17.13951 -16.49939 -16.32260 -15.93315 -15.56447 -14.99255 -14.88127 -14.47984 -14.32351 -13.99513 -13.83048 -13.59073 -13.24082 -13.10588 -12.73602 -12.61960 -12.55835 -12.31618 -12.25257 -12.10252 -11.74947 -11.60250 -11.39486 -11.35842 -11.13428 -10.94327 -10.66606 -10.55485 -9.10048 -8.20665 -6.31737 1.39382 1.41216 1.52465 2.40726 2.96030 3.12258 3.28856 3.74608 3.90738 4.05886 4.08941 4.15163 4.24615 4.31377 4.41301 4.43269 4.49340 4.57330 4.66471 4.71167 4.83480 4.88031 4.91804 5.03273 5.08082 5.11619 5.13810 5.17352 5.22581 5.24496 5.28619 5.46047 5.51538 5.73303 5.84678 6.13174 6.24374 6.29274 6.84361 7.00072 7.37403 8.91424 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034606 B = 0.004701 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.917698 B = 5954.702093 C = 6009.660007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.071 3.929 4 C -0.089 4.089 5 C 0.028 3.972 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.000 4.000 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.264 1.264 14 C 0.093 3.907 15 H 0.087 0.913 16 C -0.150 4.150 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.141 4.141 20 C 0.111 3.889 21 H 0.037 0.963 22 O -0.571 6.571 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.028 0.972 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.049 0.951 29 H 0.045 0.955 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.264 0.736 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 -16.725 -11.211 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.262 5.262 3 C -0.057 4.057 4 C -0.127 4.127 5 C -0.009 4.009 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.197 1.197 12 H -0.205 1.205 13 H -0.188 1.188 14 C -0.015 4.015 15 H 0.105 0.895 16 C -0.189 4.189 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.180 4.180 20 C 0.052 3.948 21 H 0.055 0.945 22 O -0.377 6.377 23 H 0.098 0.902 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.008 0.992 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.166 -16.763 -10.775 19.928 hybrid contribution 0.303 1.304 0.050 1.340 sum 0.137 -15.458 -10.724 18.815 Atomic orbital electron populations 1.22425 0.87083 1.02149 1.00776 1.62135 1.08242 1.13202 1.42630 1.22009 0.99131 0.87943 0.96627 1.21395 0.99654 0.95306 0.96384 1.18948 0.94493 0.92044 0.95436 1.21671 1.35023 0.98404 1.03018 0.92483 1.25982 0.94872 0.98192 1.00690 1.70095 1.39258 1.11818 1.36215 0.85437 0.79039 0.77435 0.79085 1.19702 1.20485 1.18819 1.21758 0.94610 0.97117 0.88031 0.89472 1.22194 1.01567 0.99508 0.95650 1.21492 0.96000 1.00439 0.97064 1.21522 0.96288 1.00318 0.97460 1.22200 1.01889 0.99533 0.94344 1.21820 0.95010 0.93396 0.84562 0.94504 1.86590 1.31993 1.76538 1.42612 0.90226 0.92070 0.95305 0.92169 0.95406 0.93220 0.93606 0.99199 0.99116 0.92721 0.91395 0.92787 0.90793 0.90913 0.92550 0.89718 0.90239 0.90660 0.76690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 8.99 127.69 1.15 1.82 16 2 N -0.54 -17.39 4.56 -897.03 -4.09 -21.48 16 3 C 0.07 2.65 3.81 86.30 0.33 2.98 16 4 C -0.09 -4.03 5.08 30.60 0.16 -3.88 16 5 C 0.03 1.58 4.97 29.85 0.15 1.72 16 6 C -0.54 -32.28 9.11 25.60 0.23 -32.05 16 7 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 8 C 0.00 0.01 5.46 84.66 0.46 0.48 16 9 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 10 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 14 C 0.09 2.43 1.87 44.92 0.08 2.52 16 15 H 0.09 2.17 7.93 -2.38 -0.02 2.15 16 16 C -0.15 -3.45 4.42 30.60 0.14 -3.32 16 17 C -0.11 -1.90 5.92 30.60 0.18 -1.72 16 18 C -0.12 -1.91 5.92 30.60 0.18 -1.72 16 19 C -0.14 -2.46 5.54 30.58 0.17 -2.29 16 20 C 0.11 2.75 2.79 30.58 0.09 2.83 16 21 H 0.04 1.04 6.47 -2.38 -0.02 1.03 16 22 O -0.57 -15.22 13.18 -148.98 -1.96 -17.18 16 23 H 0.08 1.92 7.98 -2.38 -0.02 1.90 16 24 H 0.06 1.89 6.58 -2.38 -0.02 1.87 16 25 H 0.03 0.77 6.97 -2.38 -0.02 0.76 16 26 H 0.06 2.32 6.23 -2.39 -0.01 2.31 16 27 H 0.03 1.04 6.81 -2.39 -0.02 1.03 16 28 H 0.05 2.18 6.60 -2.39 -0.02 2.17 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.07 1.54 6.93 -2.39 -0.02 1.53 16 34 H 0.05 1.44 6.54 -2.38 -0.02 1.43 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.38 6.95 9.08 -74.06 -0.67 6.28 16 Total: -1.00 -68.61 313.23 -0.11 -68.72 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.32 Total: 12.93 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.31 Total: -32.63 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -3.80 Total: -79.25 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -1.96 Total: -17.18 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.61 -0.11 -68.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166625765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.590 kcal (2) G-P(sol) polarization free energy of solvation -68.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds