Wall clock time and date at job start Mon Mar 30 2020 04:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46901 * 111.00102 * 2 1 4 4 C 1.50702 * 109.47477 * 66.04108 * 3 2 1 5 5 H 1.08007 * 119.99579 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00365 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99688 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99990 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47156 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47214 * 120.00243 * 8 6 4 11 11 H 1.48503 * 109.47227 * 239.99752 * 8 6 4 12 12 C 1.46894 * 111.00252 * 236.04529 * 2 1 3 13 13 C 1.53000 * 109.46923 * 293.95191 * 12 2 1 14 14 N 1.46903 * 109.47135 * 180.02562 * 13 12 2 15 15 C 1.46963 * 110.99595 * 46.18010 * 14 13 12 16 16 C 1.53056 * 109.35944 * 183.16796 * 15 14 13 17 17 N 1.46956 * 109.38342 * 301.62902 * 16 15 14 18 18 C 1.46899 * 111.00293 * 183.17592 * 17 16 15 19 19 C 1.46962 * 110.87987 * 59.31148 * 17 16 15 20 20 C 1.46956 * 111.00102 * 169.99994 * 14 13 12 21 21 H 1.08995 * 109.47063 * 183.95654 * 1 2 3 22 22 H 1.09004 * 109.47449 * 303.95968 * 1 2 3 23 23 H 1.08999 * 109.46994 * 63.95476 * 1 2 3 24 24 H 1.09001 * 109.47436 * 186.04572 * 3 2 1 25 25 H 1.09005 * 109.46774 * 306.04513 * 3 2 1 26 26 H 0.96999 * 119.99680 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46902 * 173.95654 * 12 2 1 28 28 H 1.08991 * 109.47131 * 53.95155 * 12 2 1 29 29 H 1.08994 * 109.47126 * 60.00080 * 13 12 2 30 30 H 1.09001 * 109.47223 * 300.00012 * 13 12 2 31 31 H 1.08992 * 109.47287 * 63.21185 * 15 14 13 32 32 H 1.08994 * 109.50466 * 303.13858 * 15 14 13 33 33 H 1.09002 * 109.48813 * 181.65179 * 16 15 14 34 34 H 1.09002 * 109.48870 * 61.61068 * 16 15 14 35 35 H 1.09006 * 109.46670 * 60.00118 * 18 17 16 36 36 H 1.09000 * 109.47249 * 179.97438 * 18 17 16 37 37 H 1.08993 * 109.47127 * 300.00706 * 18 17 16 38 38 H 1.09001 * 109.48625 * 60.64585 * 19 17 16 39 39 H 1.09003 * 109.48941 * 180.69193 * 19 17 16 40 40 H 1.09002 * 109.48806 * 56.84348 * 20 14 13 41 41 H 1.09003 * 109.49203 * 296.77991 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0473 1.2984 5 1 1.0744 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 2.7110 4.0022 0.6145 8 14 1.5828 4.1870 3.1381 9 1 0.8165 3.2440 3.9917 10 1 2.8247 4.5946 3.8430 11 1 0.7548 5.3879 2.8595 12 6 1.9954 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9702 14 7 2.1585 -3.0087 -2.1074 15 6 3.5520 -2.6382 -2.3915 16 6 4.0371 -3.3984 -3.6281 17 7 3.9170 -4.8436 -3.3905 18 6 4.4440 -5.6098 -4.5277 19 6 2.5234 -5.2137 -3.1067 20 6 2.0384 -4.4540 -1.8698 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3634 0.5741 0.8524 23 1 -0.3633 0.4512 -0.9233 24 1 3.0797 1.3444 -0.1082 25 1 1.5610 1.9273 -0.8310 26 1 2.9850 4.9186 0.7761 27 1 3.0797 -0.6611 -1.1754 28 1 1.5611 -0.3873 -2.0627 29 1 0.5473 -2.3475 -0.9322 30 1 2.0658 -2.6213 -0.0449 31 1 4.1779 -2.8962 -1.5373 32 1 3.6129 -1.5658 -2.5768 33 1 5.0797 -3.1474 -3.8235 34 1 3.4286 -3.1194 -4.4884 35 1 5.4963 -5.3658 -4.6737 36 1 4.3432 -6.6761 -4.3254 37 1 3.8839 -5.3558 -5.4276 38 1 1.8974 -4.9554 -3.9608 39 1 2.4623 -6.2863 -2.9222 40 1 0.9958 -4.7050 -1.6744 41 1 2.6472 -4.7330 -1.0097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167934828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:06 Heat of formation + Delta-G solvation = 20.756257 kcal Electronic energy + Delta-G solvation = -17787.059135 eV Core-core repulsion = 15123.145119 eV Total energy + Delta-G solvation = -2663.914016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.39677 -36.95410 -35.12120 -32.54029 -31.07626 -29.83788 -27.45350 -26.74451 -24.94507 -23.83874 -23.32614 -21.43869 -20.02916 -19.55459 -16.38537 -16.32124 -15.32103 -15.11242 -14.99156 -14.79324 -14.75722 -14.31284 -13.90958 -13.37864 -13.11170 -12.63003 -12.58815 -12.19409 -12.01928 -11.83992 -11.47394 -11.32410 -11.17794 -10.92109 -10.89214 -10.72417 -10.56196 -10.46773 -10.23364 -9.76231 -9.16808 -8.54494 -8.42973 -8.19700 -7.22267 -6.01567 -4.02689 3.31882 3.39126 3.44215 3.77443 3.93397 4.44695 4.78997 4.88549 4.98840 5.12491 5.22998 5.25637 5.34747 5.39202 5.40286 5.44414 5.51714 5.63468 5.65424 5.71252 5.85025 5.92607 6.00187 6.05000 6.17138 6.29373 6.38444 6.48219 6.78115 6.82051 6.84573 7.13358 7.17427 7.32985 7.37607 7.81980 8.10508 8.21694 8.56917 9.05308 9.61480 11.09493 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051422 B = 0.004069 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.380550 B = 6880.218899 C = 7210.229676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.542 5.542 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.054 3.946 13 C 0.061 3.939 14 N -0.542 5.542 15 C 0.050 3.950 16 C 0.057 3.943 17 N -0.547 5.547 18 C 0.026 3.974 19 C 0.058 3.942 20 C 0.057 3.943 21 H 0.045 0.955 22 H 0.073 0.927 23 H 0.011 0.989 24 H 0.029 0.971 25 H -0.009 1.009 26 H 0.260 0.740 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.024 0.976 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 -17.193 -8.718 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.267 5.267 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.075 4.075 13 C -0.066 4.066 14 N -0.267 5.267 15 C -0.078 4.078 16 C -0.071 4.071 17 N -0.272 5.272 18 C -0.123 4.123 19 C -0.070 4.070 20 C -0.071 4.071 21 H 0.064 0.936 22 H 0.092 0.908 23 H 0.029 0.971 24 H 0.047 0.953 25 H 0.009 0.991 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.735 -17.239 -8.314 19.154 hybrid contribution -0.424 0.979 0.019 1.067 sum 0.311 -16.260 -8.295 18.256 Atomic orbital electron populations 1.22245 0.88988 0.99457 1.00526 1.62075 1.06994 1.17879 1.39734 1.19729 0.95303 0.81503 0.96657 1.21210 1.34681 0.96885 1.01684 0.91790 1.24999 0.95333 0.97364 0.97019 1.69971 1.38531 1.11364 1.34025 0.86440 0.78146 0.79291 0.83532 1.19651 1.21012 1.21127 1.22137 0.99979 0.92294 0.93083 1.22128 1.00016 0.93682 0.90822 1.62219 1.19417 1.04621 1.40468 1.22274 0.88497 1.00158 0.96894 1.22207 1.00749 0.86786 0.97359 1.62163 1.19802 1.05722 1.39513 1.22335 1.00153 0.98418 0.91347 1.22161 0.88056 0.99206 0.97587 1.22124 1.00697 0.87746 0.96544 0.93608 0.90792 0.97060 0.95330 0.99121 0.92998 0.91311 0.95271 0.90828 0.93992 0.93806 0.89323 0.90367 0.94043 0.91390 0.91525 0.95694 0.94099 0.90545 0.90408 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.06 0.55 1.28 16 2 N -0.54 -11.99 4.75 -244.38 -1.16 -13.15 16 3 C 0.19 5.14 4.72 -4.97 -0.02 5.12 16 4 C -0.51 -14.41 8.46 -34.44 -0.29 -14.70 16 5 H 0.06 1.80 7.12 -52.48 -0.37 1.43 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.05 1.00 4.22 -3.83 -0.02 0.98 16 13 C 0.06 0.95 5.20 -3.82 -0.02 0.93 16 14 N -0.54 -7.56 4.86 -234.46 -1.14 -8.70 16 15 C 0.05 0.67 4.93 -3.76 -0.02 0.65 16 16 C 0.06 0.66 5.62 -3.76 -0.02 0.64 16 17 N -0.55 -6.08 4.97 -242.75 -1.21 -7.28 16 18 C 0.03 0.22 9.60 60.06 0.58 0.80 16 19 C 0.06 0.61 5.62 -3.76 -0.02 0.59 16 20 C 0.06 0.68 5.58 -3.77 -0.02 0.66 16 21 H 0.05 0.77 6.47 -51.93 -0.34 0.44 16 22 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 23 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 24 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 25 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.07 1.29 6.05 -51.93 -0.31 0.97 16 28 H 0.03 0.56 8.12 -51.93 -0.42 0.13 16 29 H 0.07 1.12 6.55 -51.93 -0.34 0.78 16 30 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.25 5.99 -51.93 -0.31 0.93 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 37 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -30.31 316.32 -9.91 -40.23 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -7.49 Total: -4.80 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 0.60 Total: -1.60 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -2.77 Total: -55.38 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.31 -9.91 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167934828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.984 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds