Wall clock time and date at job start Mon Mar 30 2020 04:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46901 * 111.00102 * 2 1 4 4 C 1.50702 * 109.47477 * 66.04108 * 3 2 1 5 5 H 1.08007 * 119.99579 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00365 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99688 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99990 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47156 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47214 * 120.00243 * 8 6 4 11 11 H 1.48503 * 109.47227 * 239.99752 * 8 6 4 12 12 C 1.46894 * 111.00252 * 236.04529 * 2 1 3 13 13 C 1.53000 * 109.46923 * 293.95191 * 12 2 1 14 14 N 1.46903 * 109.47135 * 180.02562 * 13 12 2 15 15 C 1.46963 * 110.99595 * 46.18010 * 14 13 12 16 16 C 1.53056 * 109.35944 * 183.16796 * 15 14 13 17 17 N 1.46956 * 109.38342 * 301.62902 * 16 15 14 18 18 C 1.46899 * 111.00293 * 183.17592 * 17 16 15 19 19 C 1.46962 * 110.87987 * 59.31148 * 17 16 15 20 20 C 1.46956 * 111.00102 * 169.99994 * 14 13 12 21 21 H 1.08995 * 109.47063 * 183.95654 * 1 2 3 22 22 H 1.09004 * 109.47449 * 303.95968 * 1 2 3 23 23 H 1.08999 * 109.46994 * 63.95476 * 1 2 3 24 24 H 1.09001 * 109.47436 * 186.04572 * 3 2 1 25 25 H 1.09005 * 109.46774 * 306.04513 * 3 2 1 26 26 H 0.96999 * 119.99680 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46902 * 173.95654 * 12 2 1 28 28 H 1.08991 * 109.47131 * 53.95155 * 12 2 1 29 29 H 1.08994 * 109.47126 * 60.00080 * 13 12 2 30 30 H 1.09001 * 109.47223 * 300.00012 * 13 12 2 31 31 H 1.08992 * 109.47287 * 63.21185 * 15 14 13 32 32 H 1.08994 * 109.50466 * 303.13858 * 15 14 13 33 33 H 1.09002 * 109.48813 * 181.65179 * 16 15 14 34 34 H 1.09002 * 109.48870 * 61.61068 * 16 15 14 35 35 H 1.09006 * 109.46670 * 60.00118 * 18 17 16 36 36 H 1.09000 * 109.47249 * 179.97438 * 18 17 16 37 37 H 1.08993 * 109.47127 * 300.00706 * 18 17 16 38 38 H 1.09001 * 109.48625 * 60.64585 * 19 17 16 39 39 H 1.09003 * 109.48941 * 180.69193 * 19 17 16 40 40 H 1.09002 * 109.48806 * 56.84348 * 20 14 13 41 41 H 1.09003 * 109.49203 * 296.77991 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0473 1.2984 5 1 1.0744 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 2.7110 4.0022 0.6145 8 14 1.5828 4.1870 3.1381 9 1 0.8165 3.2440 3.9917 10 1 2.8247 4.5946 3.8430 11 1 0.7548 5.3879 2.8595 12 6 1.9954 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9702 14 7 2.1585 -3.0087 -2.1074 15 6 3.5520 -2.6382 -2.3915 16 6 4.0371 -3.3984 -3.6281 17 7 3.9170 -4.8436 -3.3905 18 6 4.4440 -5.6098 -4.5277 19 6 2.5234 -5.2137 -3.1067 20 6 2.0384 -4.4540 -1.8698 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3634 0.5741 0.8524 23 1 -0.3633 0.4512 -0.9233 24 1 3.0797 1.3444 -0.1082 25 1 1.5610 1.9273 -0.8310 26 1 2.9850 4.9186 0.7761 27 1 3.0797 -0.6611 -1.1754 28 1 1.5611 -0.3873 -2.0627 29 1 0.5473 -2.3475 -0.9322 30 1 2.0658 -2.6213 -0.0449 31 1 4.1779 -2.8962 -1.5373 32 1 3.6129 -1.5658 -2.5768 33 1 5.0797 -3.1474 -3.8235 34 1 3.4286 -3.1194 -4.4884 35 1 5.4963 -5.3658 -4.6737 36 1 4.3432 -6.6761 -4.3254 37 1 3.8839 -5.3558 -5.4276 38 1 1.8974 -4.9554 -3.9608 39 1 2.4623 -6.2863 -2.9222 40 1 0.9958 -4.7050 -1.6744 41 1 2.6472 -4.7330 -1.0097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167934828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:05 Heat of formation + Delta-G solvation = -2.513940 kcal Electronic energy + Delta-G solvation = -17788.068206 eV Core-core repulsion = 15123.145119 eV Total energy + Delta-G solvation = -2664.923087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42898 -38.49349 -36.35751 -34.64059 -32.05269 -31.14859 -29.16790 -28.18230 -26.49695 -24.99542 -24.37496 -23.07832 -21.48289 -20.68189 -18.50431 -17.52620 -16.73206 -16.43260 -16.21259 -16.00420 -15.79645 -15.68576 -15.32334 -14.85729 -14.65381 -14.01573 -13.89346 -13.48080 -13.20289 -13.16235 -12.86604 -12.72704 -12.60248 -12.53782 -12.27495 -12.18373 -12.14506 -11.90596 -11.69033 -11.44796 -11.19974 -10.63419 -9.44082 -9.26592 -9.06300 -8.21430 -6.31828 1.41304 1.42018 1.55923 2.39737 2.76604 2.98137 3.11250 3.47478 3.86895 3.90982 4.08094 4.14365 4.24918 4.36240 4.40950 4.50597 4.54831 4.58221 4.62783 4.68136 4.72312 4.81586 4.88575 4.90862 4.92466 5.00319 5.02061 5.08418 5.09715 5.18104 5.29185 5.63937 5.89263 5.95454 6.03608 6.12974 6.15179 6.30399 6.60875 6.84438 7.38050 8.90218 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051422 B = 0.004069 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.380550 B = 6880.218899 C = 7210.229676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.549 5.549 3 C 0.208 3.792 4 C -0.524 4.524 5 H 0.065 0.935 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.972 3.028 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.059 3.941 13 C 0.076 3.924 14 N -0.546 5.546 15 C 0.050 3.950 16 C 0.063 3.937 17 N -0.561 5.561 18 C 0.026 3.974 19 C 0.061 3.939 20 C 0.056 3.944 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.009 0.991 24 H 0.002 0.998 25 H -0.038 1.038 26 H 0.265 0.735 27 H 0.060 0.940 28 H 0.023 0.977 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.038 0.962 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 -18.682 -8.327 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.274 5.274 3 C 0.082 3.918 4 C -0.562 4.562 5 H 0.083 0.917 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.797 3.203 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.203 1.203 12 C -0.069 4.069 13 C -0.052 4.052 14 N -0.271 5.271 15 C -0.078 4.078 16 C -0.065 4.065 17 N -0.286 5.286 18 C -0.121 4.121 19 C -0.067 4.067 20 C -0.072 4.072 21 H 0.100 0.900 22 H 0.077 0.923 23 H 0.028 0.972 24 H 0.020 0.980 25 H -0.021 1.021 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.068 -18.764 -7.937 20.373 hybrid contribution -0.195 1.388 -0.164 1.411 sum -0.127 -17.375 -8.101 19.171 Atomic orbital electron populations 1.22257 0.87382 1.01463 0.99741 1.62004 1.08499 1.15332 1.41565 1.19387 0.93555 0.83744 0.95163 1.21504 1.34911 0.97531 1.02262 0.91706 1.25955 0.94961 0.98050 1.00849 1.70099 1.39410 1.11881 1.36219 0.85288 0.78086 0.78167 0.78789 1.18606 1.20380 1.20347 1.22128 0.99340 0.93905 0.91532 1.21909 1.00520 0.91465 0.91267 1.62255 1.19544 1.05923 1.39421 1.22242 0.88268 0.99797 0.97494 1.22123 1.01177 0.87309 0.95925 1.62184 1.20230 1.05322 1.40837 1.22387 1.00387 0.98813 0.90544 1.22179 0.87697 1.00144 0.96664 1.22230 1.01610 0.86214 0.97130 0.89982 0.92289 0.97228 0.98010 1.02078 0.92650 0.92151 0.95832 0.89846 0.94640 0.94938 0.90662 0.89337 0.94405 0.90801 0.90155 0.95417 0.94339 0.88423 0.88966 0.94645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.14 127.69 1.17 2.73 16 2 N -0.55 -24.58 4.75 -927.08 -4.41 -28.99 16 3 C 0.21 11.45 4.72 85.56 0.40 11.86 16 4 C -0.52 -30.27 8.46 25.60 0.22 -30.05 16 5 H 0.06 3.66 7.12 -2.91 -0.02 3.64 16 6 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 7 N -0.94 -57.11 13.29 21.45 0.28 -56.83 16 8 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 9 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 C 0.06 2.23 4.22 86.30 0.36 2.60 16 13 C 0.08 2.31 5.20 86.30 0.45 2.76 16 14 N -0.55 -14.68 4.86 -895.70 -4.35 -19.03 16 15 C 0.05 1.35 4.93 86.31 0.43 1.77 16 16 C 0.06 1.40 5.62 86.31 0.49 1.88 16 17 N -0.56 -11.40 4.97 -921.91 -4.58 -15.98 16 18 C 0.03 0.39 9.60 127.69 1.23 1.62 16 19 C 0.06 1.15 5.62 86.31 0.49 1.63 16 20 C 0.06 1.23 5.58 86.31 0.48 1.71 16 21 H 0.08 2.61 6.47 -2.39 -0.02 2.59 16 22 H 0.06 2.48 6.76 -2.39 -0.02 2.46 16 23 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.00 0.11 7.93 -2.39 -0.02 0.09 16 25 H -0.04 -2.30 8.12 -2.38 -0.02 -2.32 16 26 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.06 2.35 6.05 -2.38 -0.01 2.33 16 28 H 0.02 0.91 8.12 -2.39 -0.02 0.89 16 29 H 0.08 2.36 6.55 -2.39 -0.02 2.35 16 30 H 0.04 1.13 8.08 -2.39 -0.02 1.11 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 2.18 5.99 -2.39 -0.01 2.17 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.08 0.98 8.13 -2.39 -0.02 0.96 16 37 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.10 1.43 8.13 -2.39 -0.02 1.41 16 40 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -65.05 316.32 -3.90 -68.95 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.96 Total: 6.22 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 6.17 Total: -1.06 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -13.05 Total: -120.82 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -65.05 -3.90 -68.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167934828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.435 kcal (2) G-P(sol) polarization free energy of solvation -65.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds