Wall clock time and date at job start Mon Mar 30 2020 05:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99861 * 3 2 1 5 5 H 1.48494 * 109.46953 * 29.99814 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00059 * 3 2 1 7 7 C 1.40131 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00243 * 179.97438 * 7 2 1 9 9 C 1.41833 * 120.00323 * 0.02562 * 7 2 1 10 10 O 1.21753 * 119.99624 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00324 * 179.97438 * 9 7 2 12 12 C 1.39098 * 119.99693 * 180.27592 * 11 9 7 13 13 N 1.32411 * 119.73691 * 359.44358 * 12 11 9 14 14 C 1.31963 * 121.66533 * 179.75331 * 13 12 11 15 15 Cl 1.73603 * 119.52758 * 180.26941 * 14 13 12 16 16 C 1.38392 * 120.94934 * 0.52940 * 14 13 12 17 17 C 1.38698 * 119.37018 * 359.74232 * 16 14 13 18 18 C 1.38862 * 118.46473 * 0.02562 * 17 16 14 19 19 O 1.35948 * 120.49170 * 179.97438 * 18 17 16 20 20 H 0.96991 * 119.99800 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 22 22 H 1.08001 * 120.31631 * 179.76042 * 16 14 13 23 23 H 1.07999 * 120.76580 * 179.97438 * 17 16 14 24 24 H 0.96694 * 113.99344 * 270.02430 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0464 -1.4002 5 1 1.4378 2.6526 0.7000 6 1 3.5379 1.4402 0.7000 7 6 2.0070 -1.2136 0.0005 8 1 3.0870 -1.2136 0.0001 9 6 1.2979 -2.4419 0.0005 10 8 0.0804 -2.4419 0.0005 11 7 1.9718 -3.6091 0.0005 12 6 1.2763 -4.8137 -0.0053 13 7 -0.0478 -4.8076 0.0004 14 6 -0.7457 -5.9275 -0.0096 15 17 -2.4802 -5.8547 -0.0086 16 6 -0.1149 -7.1593 -0.0156 17 6 1.2710 -7.2138 -0.0163 18 6 1.9803 -6.0200 -0.0105 19 8 3.3398 -6.0253 -0.0105 20 1 -0.4849 0.8400 -0.0004 21 1 2.9418 -3.6091 0.0002 22 1 -0.6962 -8.0695 -0.0198 23 1 1.7866 -8.1627 -0.0205 24 1 3.7329 -6.0315 0.8729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194576832.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:12 Heat of formation + Delta-G solvation = -65.708975 kcal Electronic energy + Delta-G solvation = -14776.912772 eV Core-core repulsion = 11908.907467 eV Total energy + Delta-G solvation = -2868.005305 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.69316 -39.30374 -38.33498 -37.29210 -35.44381 -34.43276 -32.78738 -30.42180 -28.53483 -24.95226 -24.12284 -22.01243 -20.01646 -19.15846 -18.45146 -17.88692 -17.09274 -16.69261 -16.27266 -15.69270 -15.42839 -14.56980 -14.48737 -14.36347 -13.84161 -13.24512 -12.92691 -12.72017 -12.57556 -12.45389 -12.08494 -11.99608 -11.36851 -10.92481 -10.64339 -10.49692 -9.51578 -8.90475 -8.35156 -7.02114 -0.07393 0.32865 0.88140 1.39217 1.40749 1.56826 2.18615 2.34245 2.59403 2.71293 3.12562 3.67266 3.70478 4.04425 4.19765 4.39596 4.83008 4.98247 5.21238 5.38041 5.77294 5.95195 6.10350 6.71651 6.73637 6.84369 7.45994 8.41852 8.59855 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.029026 B = 0.007477 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.422026 B = 3743.726220 C = 4695.760843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.029 3.971 3 Si 1.004 2.996 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.565 4.565 8 H 0.093 0.907 9 C 0.514 3.486 10 O -0.568 6.568 11 N -0.665 5.665 12 C 0.351 3.649 13 N -0.513 5.513 14 C 0.174 3.826 15 Cl -0.046 7.046 16 C -0.181 4.181 17 C -0.045 4.045 18 C 0.006 3.994 19 O -0.484 6.484 20 H 0.278 0.722 21 H 0.416 0.584 22 H 0.180 0.820 23 H 0.196 0.804 24 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.836 -12.735 1.703 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.189 4.189 3 Si 0.823 3.177 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.168 1.168 7 C -0.600 4.600 8 H 0.111 0.889 9 C 0.322 3.678 10 O -0.449 6.449 11 N -0.311 5.311 12 C 0.116 3.884 13 N -0.233 5.233 14 C 0.008 3.992 15 Cl -0.018 7.018 16 C -0.204 4.204 17 C -0.071 4.071 18 C -0.046 4.046 19 O -0.294 6.294 20 H 0.088 0.912 21 H 0.254 0.746 22 H 0.197 0.803 23 H 0.213 0.787 24 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 4.223 -11.686 1.121 12.476 hybrid contribution 0.654 0.303 0.453 0.852 sum 4.877 -11.383 1.574 12.483 Atomic orbital electron populations 1.70189 1.09764 1.29456 1.33669 1.27063 0.95506 1.05245 0.91077 0.84923 0.78819 0.74468 0.79515 1.18594 1.19708 1.16789 1.20591 0.95528 0.90345 1.53537 0.88935 1.17689 0.87837 0.83522 0.78801 1.90738 1.14837 1.86076 1.53248 1.44142 1.10319 1.03407 1.73268 1.19361 0.87338 0.87967 0.93757 1.66882 1.07368 1.31349 1.17681 1.21905 0.87434 0.90168 0.99691 1.98358 1.08212 1.98699 1.96547 1.21893 0.95098 0.96740 1.06655 1.21975 0.92668 0.98614 0.93816 1.18885 0.84903 0.90620 1.10188 1.84836 1.13402 1.95924 1.35254 0.91153 0.74603 0.80285 0.78660 0.73506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.95 11.73 21.85 0.26 -48.69 14 2 C 0.03 1.59 5.50 85.33 0.47 2.06 14 3 Si 1.00 40.03 29.56 68.60 2.03 42.06 14 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 14 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 14 6 H -0.24 -8.94 7.11 99.48 0.71 -8.23 14 7 C -0.57 -31.63 9.31 23.62 0.22 -31.41 14 8 H 0.09 4.54 7.85 -2.91 -0.02 4.51 14 9 C 0.51 30.39 7.54 85.13 0.64 31.03 14 10 O -0.57 -38.79 13.12 -4.52 -0.06 -38.85 14 11 N -0.67 -31.24 5.36 -316.02 -1.70 -32.94 14 12 C 0.35 15.25 7.44 133.16 0.99 16.24 14 13 N -0.51 -25.03 7.83 -183.53 -1.44 -26.46 14 14 C 0.17 6.69 7.27 84.71 0.62 7.31 14 15 Cl -0.05 -1.68 29.10 -2.72 -0.08 -1.76 14 16 C -0.18 -4.83 9.87 22.42 0.22 -4.61 14 17 C -0.05 -1.06 10.12 22.53 0.23 -0.83 14 18 C 0.01 0.18 6.76 22.76 0.15 0.34 14 19 O -0.48 -11.60 12.76 -92.97 -1.19 -12.79 14 20 H 0.28 15.33 8.29 -92.71 -0.77 14.56 14 21 H 0.42 16.18 8.00 -92.71 -0.74 15.44 14 22 H 0.18 3.27 8.06 -2.91 -0.02 3.25 14 23 H 0.20 2.61 8.06 -2.91 -0.02 2.58 14 24 H 0.41 5.67 9.06 -74.06 -0.67 5.00 14 Total: -1.00 -82.50 243.91 1.24 -81.26 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.13 Total: 18.04 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 3.54 Total: 20.13 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -2.88 Total: -108.09 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -1.25 Total: -51.64 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -82.50 1.24 -81.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194576832.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.554 kcal (2) G-P(sol) polarization free energy of solvation -82.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds