Wall clock time and date at job start Mon Mar 30 2020 04:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46875 * 2 1 4 4 C 1.36939 * 120.00412 * 272.56871 * 3 2 1 5 5 H 1.08000 * 119.99958 * 146.31096 * 4 3 2 6 6 C 1.38812 * 119.99733 * 326.32063 * 4 3 2 7 7 N 1.31618 * 119.99809 * 336.63719 * 6 4 3 8 8 Si 1.86798 * 119.99935 * 156.64739 * 6 4 3 9 9 H 1.48500 * 109.47583 * 89.99665 * 8 6 4 10 10 H 1.48499 * 109.46898 * 209.99256 * 8 6 4 11 11 H 1.48495 * 109.46884 * 329.99136 * 8 6 4 12 12 C 1.46507 * 119.99962 * 92.57004 * 3 2 1 13 13 C 1.52998 * 109.47306 * 270.00061 * 12 3 2 14 14 N 1.46902 * 109.47103 * 179.97438 * 13 12 3 15 15 C 1.46953 * 110.99604 * 46.17898 * 14 13 12 16 16 C 1.53055 * 109.36018 * 183.16651 * 15 14 13 17 17 N 1.46957 * 109.38316 * 301.62880 * 16 15 14 18 18 C 1.46893 * 110.99912 * 183.17648 * 17 16 15 19 19 C 1.46960 * 110.87717 * 59.31436 * 17 16 15 20 20 C 1.46952 * 110.99698 * 169.99899 * 14 13 12 21 21 H 1.09003 * 109.46719 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47367 * 299.99861 * 1 2 3 23 23 H 1.08997 * 109.47088 * 60.00395 * 1 2 3 24 24 H 1.08996 * 109.47367 * 240.00139 * 2 1 3 25 25 H 1.08997 * 109.47088 * 119.99604 * 2 1 3 26 26 H 0.97001 * 119.99968 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47043 * 149.99882 * 12 3 2 28 28 H 1.09004 * 109.46740 * 30.00475 * 12 3 2 29 29 H 1.08994 * 109.47030 * 59.99707 * 13 12 3 30 30 H 1.08999 * 109.46700 * 300.00040 * 13 12 3 31 31 H 1.08994 * 109.47468 * 63.21042 * 15 14 13 32 32 H 1.09004 * 109.50974 * 303.13982 * 15 14 13 33 33 H 1.09001 * 109.48643 * 181.65359 * 16 15 14 34 34 H 1.09001 * 109.48780 * 61.61025 * 16 15 14 35 35 H 1.08998 * 109.47633 * 60.00363 * 18 17 16 36 36 H 1.09005 * 109.47243 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.47815 * 300.00322 * 18 17 16 38 38 H 1.08995 * 109.49323 * 60.64155 * 19 17 16 39 39 H 1.08997 * 109.49131 * 180.69367 * 19 17 16 40 40 H 1.09001 * 109.49012 * 56.84768 * 20 14 13 41 41 H 1.08995 * 109.49182 * 296.77891 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1964 2.0446 -1.1847 5 1 2.0190 3.1085 -1.2398 6 6 2.6047 1.3495 -2.3147 7 7 3.2507 0.2097 -2.1885 8 14 2.2375 2.0318 -4.0144 9 1 3.3575 2.9041 -4.4503 10 1 2.0811 0.9101 -4.9749 11 1 0.9821 2.8236 -3.9693 12 6 2.3160 2.0529 1.2675 13 6 1.0611 2.7670 1.7735 14 7 1.3596 3.4400 3.0447 15 6 2.6262 4.1806 2.9637 16 6 2.9398 4.8002 4.3277 17 7 1.8381 5.6879 4.7250 18 6 2.1366 6.3608 5.9962 19 6 0.5717 4.9468 4.8061 20 6 0.2578 4.3276 3.4420 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.5364 -0.2759 -2.9782 27 1 3.1120 2.7817 1.1143 28 1 2.6359 1.3150 2.0033 29 1 0.2652 2.0382 1.9267 30 1 0.7414 3.5048 1.0376 31 1 2.5386 4.9699 2.2172 32 1 3.4288 3.4994 2.6807 33 1 3.8640 5.3744 4.2623 34 1 3.0548 4.0091 5.0687 35 1 3.0433 6.9560 5.8882 36 1 1.3048 7.0111 6.2671 37 1 2.2829 5.6143 6.7769 38 1 0.6595 4.1571 5.5523 39 1 -0.2307 5.6278 5.0899 40 1 -0.6663 3.7533 3.5073 41 1 0.1431 5.1188 2.7012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214012444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:38 Heat of formation + Delta-G solvation = 35.380222 kcal Electronic energy + Delta-G solvation = -18262.460980 eV Core-core repulsion = 15599.181107 eV Total energy + Delta-G solvation = -2663.279873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.16316 -36.41861 -34.87302 -31.56971 -30.90464 -30.04630 -28.58221 -26.34573 -24.27465 -23.65726 -23.10433 -21.14784 -20.00427 -19.45112 -16.66765 -16.05883 -15.12019 -14.90825 -14.80640 -14.60824 -14.49080 -13.96874 -13.67361 -13.25452 -12.58189 -12.49632 -12.34015 -12.10972 -11.80489 -11.75786 -11.24474 -11.18596 -11.10700 -10.81758 -10.68983 -10.54575 -10.47574 -10.32820 -9.96585 -9.59614 -9.46459 -8.44211 -8.40760 -7.93064 -6.57364 -5.73681 -3.29089 3.37529 3.45253 3.49018 3.91103 4.21295 4.54328 4.97067 5.01582 5.19484 5.29726 5.34955 5.43567 5.53549 5.54856 5.63160 5.65557 5.71671 5.83123 5.89527 6.03455 6.10644 6.18576 6.22755 6.36985 6.46994 6.63049 6.68473 6.78738 6.95502 6.96899 6.99446 7.05370 7.31266 7.44674 7.49499 7.79766 7.88052 8.54340 9.23419 9.87794 10.43448 11.25071 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034357 B = 0.005330 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.778009 B = 5252.486290 C = 5541.171092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 N -0.584 5.584 4 C -0.255 4.255 5 H 0.059 0.941 6 C 0.009 3.991 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.289 1.289 11 H -0.279 1.279 12 C 0.148 3.852 13 C 0.037 3.963 14 N -0.540 5.540 15 C 0.052 3.948 16 C 0.058 3.942 17 N -0.547 5.547 18 C 0.026 3.974 19 C 0.059 3.941 20 C 0.057 3.943 21 H 0.032 0.968 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.098 0.902 25 H 0.021 0.979 26 H 0.254 0.746 27 H 0.048 0.952 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 7.418 13.173 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.305 5.305 4 C -0.385 4.385 5 H 0.076 0.924 6 C -0.191 4.191 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.215 1.215 11 H -0.205 1.205 12 C 0.020 3.980 13 C -0.093 4.093 14 N -0.266 5.266 15 C -0.076 4.076 16 C -0.071 4.071 17 N -0.272 5.272 18 C -0.122 4.122 19 C -0.069 4.069 20 C -0.072 4.072 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.116 0.884 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.398 7.285 13.031 15.311 hybrid contribution -0.351 0.363 -0.892 1.025 sum -3.749 7.649 12.139 14.829 Atomic orbital electron populations 1.22345 1.00953 0.98511 1.00355 1.21019 0.90068 0.86505 1.01652 1.43819 1.74522 1.11525 1.00611 1.18987 1.39726 0.93151 0.86630 0.92371 1.25035 0.97550 0.97832 0.98670 1.69982 1.37367 1.17273 1.28419 0.86433 0.78458 0.78141 0.84587 1.21326 1.21482 1.20469 1.20948 0.93075 0.95403 0.88541 1.22975 1.01659 0.97375 0.87272 1.62269 1.02210 1.29351 1.32750 1.22235 0.93395 0.96547 0.95449 1.22218 0.93498 0.94332 0.97008 1.62158 1.03353 1.31197 1.30491 1.22328 1.01841 0.98259 0.89791 1.22159 0.91609 0.95929 0.97226 1.22114 0.94719 0.94819 0.95555 0.94926 0.94771 0.93350 0.88425 0.96027 0.93619 0.93355 0.94232 0.91362 0.95073 0.94159 0.89224 0.90607 0.94145 0.91489 0.91641 0.95787 0.94184 0.90798 0.90672 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.23 37.16 0.38 -3.02 16 2 C 0.13 3.21 6.08 -4.04 -0.02 3.19 16 3 N -0.58 -14.66 2.46 -173.23 -0.43 -15.09 16 4 C -0.26 -7.01 9.48 -15.06 -0.14 -7.15 16 5 H 0.06 1.60 7.93 -52.49 -0.42 1.19 16 6 C 0.01 0.24 4.97 -17.43 -0.09 0.16 16 7 N -0.89 -25.66 11.29 55.49 0.63 -25.04 16 8 Si 0.89 21.70 29.61 -169.99 -5.03 16.66 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.15 3.16 4.97 -4.04 -0.02 3.14 16 13 C 0.04 0.69 5.60 -3.82 -0.02 0.67 16 14 N -0.54 -8.76 4.86 -234.47 -1.14 -9.90 16 15 C 0.05 0.80 4.93 -3.77 -0.02 0.78 16 16 C 0.06 0.74 5.62 -3.76 -0.02 0.72 16 17 N -0.55 -6.85 4.97 -242.75 -1.21 -8.06 16 18 C 0.03 0.25 9.60 60.06 0.58 0.83 16 19 C 0.06 0.72 5.62 -3.76 -0.02 0.70 16 20 C 0.06 0.80 5.58 -3.77 -0.02 0.78 16 21 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.03 0.66 6.44 -51.93 -0.33 0.33 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.10 2.65 5.30 -51.93 -0.28 2.38 16 25 H 0.02 0.49 7.86 -51.93 -0.41 0.08 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 27 H 0.05 1.05 6.16 -51.93 -0.32 0.73 16 28 H 0.04 0.83 7.87 -51.93 -0.41 0.42 16 29 H 0.07 1.31 6.44 -51.93 -0.33 0.98 16 30 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.42 6.00 -51.93 -0.31 1.11 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 37 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -28.98 315.24 -9.28 -38.26 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.43 Total: -2.38 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 0.58 Total: 0.80 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -2.14 Total: -58.09 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.98 -9.28 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214012444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.638 kcal (2) G-P(sol) polarization free energy of solvation -28.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds