Wall clock time and date at job start Mon Mar 30 2020 05:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30940 * 1 3 3 Si 1.86803 * 120.00138 * 2 1 4 4 H 1.48501 * 109.47223 * 240.00053 * 3 2 1 5 5 H 1.48501 * 109.46872 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47087 * 119.99861 * 3 2 1 7 7 C 1.39840 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00356 * 197.87019 * 7 2 1 9 9 C 1.40997 * 119.99848 * 17.86676 * 7 2 1 10 10 C 1.40820 * 120.21047 * 24.82427 * 9 7 2 11 11 C 1.37624 * 119.92313 * 180.24916 * 10 9 7 12 12 C 1.40176 * 120.20518 * 359.46894 * 11 10 9 13 13 C 1.38938 * 120.28625 * 0.51371 * 12 11 10 14 14 Cl 1.73608 * 119.87183 * 179.74074 * 13 12 11 15 15 C 1.38217 * 120.26213 * 359.76706 * 13 12 11 16 16 O 1.35729 * 120.13002 * 180.02562 * 15 13 12 17 17 O 1.36379 * 108.47290 * 180.33551 * 12 11 10 18 18 C 1.44270 * 105.45179 * 342.22804 * 17 12 11 19 19 O 1.36584 * 131.31829 * 179.72249 * 11 10 9 20 20 H 0.97000 * 120.00448 * 359.97438 * 1 2 3 21 21 H 1.07994 * 120.03712 * 359.97374 * 10 9 7 22 22 H 0.96702 * 113.99724 * 272.20185 * 16 15 13 23 23 H 1.09001 * 110.97009 * 269.14689 * 18 17 12 24 24 H 1.09001 * 110.27582 * 146.23889 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 3.0972 1.6964 -1.2125 5 1 1.2784 2.7464 0.0006 6 1 3.0972 1.6964 1.2125 7 6 2.0086 -1.2110 -0.0005 8 1 3.0495 -1.2338 0.2865 9 6 1.3546 -2.4025 -0.3757 10 6 0.2282 -2.3570 -1.2197 11 6 -0.4087 -3.5232 -1.5780 12 6 0.0670 -4.7576 -1.1144 13 6 1.1778 -4.8126 -0.2817 14 17 1.7536 -6.3468 0.2915 15 6 1.8259 -3.6506 0.0926 16 8 2.9111 -3.7075 0.9058 17 8 -0.7301 -5.7439 -1.6163 18 6 -1.9391 -5.0817 -2.0421 19 8 -1.5024 -3.7484 -2.3644 20 1 -0.4851 0.8400 0.0004 21 1 -0.1380 -1.4077 -1.5817 22 1 2.6972 -3.6920 1.8487 23 1 -2.6754 -5.0594 -1.2387 24 1 -2.3487 -5.5738 -2.9242 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215587653.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:15 Heat of formation + Delta-G solvation = -115.182627 kcal Electronic energy + Delta-G solvation = -15151.635876 eV Core-core repulsion = 12249.192481 eV Total energy + Delta-G solvation = -2902.443395 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.018 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.63491 -39.61903 -37.43827 -36.86228 -36.69201 -35.12601 -31.30023 -29.96155 -27.59166 -25.97803 -23.51441 -23.18988 -19.89788 -19.37588 -18.39923 -18.12493 -17.47830 -16.63325 -16.47499 -15.74393 -15.49541 -14.97512 -14.84407 -14.36287 -13.73721 -13.63237 -13.37691 -12.97444 -12.67255 -12.53883 -12.37059 -12.03146 -11.84062 -11.45441 -11.19432 -10.78105 -9.35549 -8.97064 -8.70758 -6.46034 0.48950 0.52233 1.26359 1.41654 1.48662 1.55577 2.02047 2.18994 2.50099 2.82047 3.28215 3.80446 4.02001 4.09182 4.19699 4.55217 4.79828 4.99223 5.08027 5.22925 5.36685 5.60478 5.77343 6.16294 6.44865 6.58828 6.67980 7.17318 8.14783 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.026820 B = 0.009543 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.735080 B = 2933.317830 C = 3886.697850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.038 3.962 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.452 4.452 8 H 0.095 0.905 9 C 0.092 3.908 10 C -0.162 4.162 11 C 0.053 3.947 12 C -0.103 4.103 13 C 0.000 4.000 14 Cl -0.071 7.071 15 C -0.021 4.021 16 O -0.477 6.477 17 O -0.322 6.322 18 C 0.207 3.793 19 O -0.331 6.331 20 H 0.297 0.703 21 H 0.125 0.875 22 H 0.379 0.621 23 H 0.089 0.911 24 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 -2.233 0.389 2.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.181 4.181 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.479 4.479 8 H 0.113 0.887 9 C 0.088 3.912 10 C -0.182 4.182 11 C 0.009 3.991 12 C -0.147 4.147 13 C -0.027 4.027 14 Cl -0.042 7.042 15 C -0.069 4.069 16 O -0.286 6.286 17 O -0.240 6.240 18 C 0.095 3.905 19 O -0.248 6.248 20 H 0.109 0.891 21 H 0.143 0.857 22 H 0.234 0.766 23 H 0.107 0.893 24 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.534 -2.353 -0.252 2.820 hybrid contribution -0.320 0.313 0.484 0.659 sum -1.855 -2.040 0.232 2.767 Atomic orbital electron populations 1.69869 1.09151 1.31793 1.31979 1.26905 0.95497 1.04910 0.90772 0.85117 0.78745 0.74813 0.80408 1.18494 1.19004 1.17846 1.19690 0.98840 0.90902 1.38456 0.88717 1.17695 0.90486 0.92489 0.90571 1.20175 1.00743 0.94623 1.02652 1.19683 0.90524 0.94379 0.94537 1.18723 1.00783 0.86156 1.09080 1.20047 0.95805 0.86601 1.00282 1.98264 1.88575 1.29364 1.87989 1.17690 0.95693 0.89482 1.03990 1.84736 1.28216 1.95755 1.19888 1.87193 1.28136 1.30720 1.77955 1.25910 0.86926 0.75840 1.01781 1.87218 1.43163 1.34915 1.59545 0.89148 0.85746 0.76616 0.89311 0.82293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.23 10.97 21.81 0.24 -37.99 14 2 C 0.04 1.72 5.13 85.21 0.44 2.15 14 3 Si 0.99 34.56 29.60 68.60 2.03 36.59 14 4 H -0.26 -9.10 7.11 99.48 0.71 -8.39 14 5 H -0.27 -8.76 7.11 99.48 0.71 -8.05 14 6 H -0.25 -8.56 7.11 99.48 0.71 -7.85 14 7 C -0.45 -22.29 8.70 23.33 0.20 -22.09 14 8 H 0.09 4.55 7.64 -2.91 -0.02 4.52 14 9 C 0.09 4.70 5.58 -21.19 -0.12 4.58 14 10 C -0.16 -8.33 8.68 22.76 0.20 -8.13 14 11 C 0.05 2.58 7.12 22.60 0.16 2.74 14 12 C -0.10 -4.82 6.95 22.91 0.16 -4.66 14 13 C 0.00 0.02 6.33 22.43 0.14 0.16 14 14 Cl -0.07 -2.80 28.48 -2.72 -0.08 -2.87 14 15 C -0.02 -1.03 6.72 23.04 0.15 -0.87 14 16 O -0.48 -20.43 12.21 -90.52 -1.11 -21.53 14 17 O -0.32 -13.33 11.41 -74.65 -0.85 -14.18 14 18 C 0.21 6.83 8.88 113.37 1.01 7.83 14 19 O -0.33 -14.12 11.41 -77.05 -0.88 -15.00 14 20 H 0.30 12.68 8.30 -92.71 -0.77 11.91 14 21 H 0.12 6.60 6.17 -2.91 -0.02 6.58 14 22 H 0.38 13.13 9.06 -74.06 -0.67 12.45 14 23 H 0.09 2.56 8.14 -2.39 -0.02 2.54 14 24 H 0.16 3.72 8.14 -2.39 -0.02 3.70 14 Total: -1.00 -58.16 236.96 2.30 -55.86 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.60 Total: 17.40 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 2.34 Total: -18.28 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.24 Total: -37.99 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -2.84 Total: -50.71 kcal Atomic # 14 Polarization: 34.56 SS G_CDS: 2.03 Total: 36.59 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.08 Total: -2.87 kcal Total: -58.16 2.30 -55.86 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215587653.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.320 kcal (2) G-P(sol) polarization free energy of solvation -58.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds