Wall clock time and date at job start Mon Mar 30 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30912 * 1 3 3 Si 1.86793 * 120.00273 * 2 1 4 4 H 1.48495 * 109.47517 * 298.44289 * 3 2 1 5 5 H 1.48497 * 109.47074 * 58.44512 * 3 2 1 6 6 H 1.48507 * 109.47273 * 178.44333 * 3 2 1 7 7 C 1.39908 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00310 * 335.34233 * 7 2 1 9 9 C 1.41016 * 119.99969 * 155.34317 * 7 2 1 10 10 C 1.41158 * 120.27005 * 325.74439 * 9 7 2 11 11 C 1.38674 * 119.70059 * 180.02562 * 10 9 7 12 12 C 1.38945 * 120.10227 * 359.97438 * 11 10 9 13 13 C 1.38576 * 120.68151 * 0.02562 * 12 11 10 14 14 Cl 1.73598 * 119.81643 * 179.97438 * 13 12 11 15 15 C 1.38247 * 120.36574 * 359.97438 * 13 12 11 16 16 O 1.35783 * 120.15427 * 179.69732 * 15 13 12 17 17 O 1.36680 * 108.62879 * 179.97438 * 11 10 9 18 18 C 1.43982 * 105.43441 * 17.25355 * 17 11 10 19 19 O 1.36297 * 131.45592 * 0.02562 * 10 9 7 20 20 H 0.97000 * 119.99749 * 359.97438 * 1 2 3 21 21 H 1.08004 * 119.65584 * 180.02562 * 12 11 10 22 22 H 0.96698 * 113.99837 * 85.28759 * 16 15 13 23 23 H 1.09007 * 110.59241 * 91.51397 * 18 17 11 24 24 H 1.08997 * 110.59231 * 214.43957 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 1.9133 2.3798 -1.2310 5 1 1.8562 2.4127 1.1930 6 1 3.7028 1.3465 0.0380 7 6 2.0086 -1.2117 -0.0005 8 1 1.5424 -2.1045 0.3892 9 6 3.3223 -1.2672 -0.5100 10 6 3.6975 -0.4533 -1.6006 11 6 4.9925 -0.5178 -2.0925 12 6 5.9158 -1.3797 -1.5135 13 6 5.5582 -2.1831 -0.4425 14 17 6.7297 -3.2523 0.2633 15 6 4.2738 -2.1380 0.0668 16 8 3.9264 -2.9316 1.1124 17 8 5.1065 0.3556 -3.1377 18 6 3.9835 1.2483 -3.0153 19 8 2.9941 0.4577 -2.3307 20 1 -0.4850 0.8401 0.0004 21 1 6.9225 -1.4238 -1.9021 22 1 4.1379 -2.5564 1.9782 23 1 4.2519 2.1229 -2.4225 24 1 3.6222 1.5471 -3.9993 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215587713.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:25 Heat of formation + Delta-G solvation = -86.694118 kcal Electronic energy + Delta-G solvation = -15522.352915 eV Core-core repulsion = 12621.144875 eV Total energy + Delta-G solvation = -2901.208040 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.018 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.26946 -38.00447 -35.85666 -35.48792 -34.77183 -33.60025 -30.35583 -28.16422 -25.43164 -24.96793 -21.93862 -21.25767 -18.22141 -18.00771 -17.21345 -16.24273 -16.10720 -15.03663 -14.89525 -14.19563 -13.75967 -13.64077 -13.13656 -12.61319 -12.49213 -12.15809 -12.08599 -11.52175 -11.25708 -10.94666 -10.56549 -10.52802 -10.07317 -9.62520 -9.50291 -9.21488 -7.81534 -7.20989 -7.09096 -4.69584 1.99952 2.15533 2.75398 2.96472 3.02773 3.15412 3.67945 3.87169 4.14678 4.32120 4.84759 5.20400 5.27283 5.47427 5.72698 5.97526 6.19867 6.48263 6.76203 6.90890 6.99701 7.08655 7.30327 7.83285 8.11297 8.19185 8.48981 8.69191 9.79147 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.012495 C = 0.009125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.320481 B = 2240.345479 C = 3067.722755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.094 3.906 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.251 1.251 7 C -0.420 4.420 8 H 0.106 0.894 9 C 0.100 3.900 10 C -0.078 4.078 11 C 0.073 3.927 12 C -0.214 4.214 13 C -0.002 4.002 14 Cl -0.088 7.088 15 C 0.015 3.985 16 O -0.471 6.471 17 O -0.319 6.319 18 C 0.209 3.791 19 O -0.298 6.298 20 H 0.290 0.710 21 H 0.120 0.880 22 H 0.365 0.635 23 H 0.065 0.935 24 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 2.806 -0.391 7.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.130 4.130 3 Si 0.746 3.254 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.175 1.175 7 C -0.446 4.446 8 H 0.124 0.876 9 C 0.095 3.905 10 C -0.122 4.122 11 C 0.029 3.971 12 C -0.235 4.235 13 C -0.029 4.029 14 Cl -0.059 7.059 15 C -0.032 4.032 16 O -0.279 6.279 17 O -0.236 6.236 18 C 0.096 3.904 19 O -0.215 6.215 20 H 0.100 0.900 21 H 0.138 0.862 22 H 0.219 0.781 23 H 0.082 0.918 24 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.110 2.454 -0.961 6.654 hybrid contribution 0.447 1.216 0.249 1.319 sum 6.557 3.670 -0.712 7.548 Atomic orbital electron populations 1.69763 1.08407 1.30909 1.30625 1.26228 0.94662 1.02095 0.90015 0.85969 0.82153 0.79911 0.77379 1.19300 1.21652 1.17513 1.19306 0.94585 0.97417 1.33325 0.87604 1.16699 0.93955 0.90547 0.89285 1.19489 0.89890 1.04316 0.98554 1.19222 0.94152 0.95270 0.88439 1.18738 0.98609 1.04514 1.01626 1.20502 0.89087 0.95750 0.97599 1.98284 1.59100 1.64791 1.83753 1.17499 0.89183 1.01704 0.94805 1.84846 1.84869 1.43191 1.14951 1.87241 1.47565 1.43313 1.45490 1.25365 0.76359 0.90526 0.98128 1.87159 1.30104 1.45264 1.59000 0.89959 0.86197 0.78141 0.91796 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.90 13.93 55.55 0.77 -19.13 14 2 C 0.09 2.38 5.15 -17.32 -0.09 2.29 14 3 Si 0.92 20.46 23.61 -169.99 -4.01 16.45 14 4 H -0.27 -5.74 7.00 56.52 0.40 -5.34 14 5 H -0.29 -6.16 7.11 56.52 0.40 -5.76 14 6 H -0.25 -5.72 6.20 56.52 0.35 -5.37 14 7 C -0.42 -11.05 9.06 -37.90 -0.34 -11.39 14 8 H 0.11 2.93 7.97 -52.49 -0.42 2.52 14 9 C 0.10 2.49 4.88 -106.58 -0.52 1.97 14 10 C -0.08 -1.90 4.67 -38.31 -0.18 -2.08 14 11 C 0.07 1.66 7.14 -39.16 -0.28 1.38 14 12 C -0.21 -4.53 9.82 -39.20 -0.39 -4.92 14 13 C 0.00 -0.04 6.32 -39.45 -0.25 -0.29 14 14 Cl -0.09 -1.57 28.47 -51.86 -1.48 -3.04 14 15 C 0.02 0.34 6.72 -38.42 -0.26 0.09 14 16 O -0.47 -9.85 12.34 -19.06 -0.24 -10.08 14 17 O -0.32 -6.57 11.41 -46.29 -0.53 -7.09 14 18 C 0.21 3.85 8.53 101.05 0.86 4.71 14 19 O -0.30 -6.88 7.58 -45.04 -0.34 -7.22 14 20 H 0.29 6.67 8.30 -40.82 -0.34 6.33 14 21 H 0.12 2.27 8.06 -52.48 -0.42 1.85 14 22 H 0.37 6.05 9.06 45.56 0.41 6.46 14 23 H 0.06 1.07 7.84 -51.93 -0.41 0.67 14 24 H 0.12 1.70 8.14 -51.93 -0.42 1.28 14 LS Contribution 229.33 15.07 3.46 3.46 Total: -1.00 -28.03 229.33 -4.26 -32.28 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -0.45 Total: 2.63 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.44 Total: -8.24 kcal Atomic # 7 Polarization: -19.90 SS G_CDS: 0.77 Total: -19.13 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -1.10 Total: -24.40 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.01 Total: 16.45 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.48 Total: -3.04 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.03 -4.26 -32.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215587713.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.411 kcal (2) G-P(sol) polarization free energy of solvation -28.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds