Wall clock time and date at job start Mon Mar 30 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86791 * 120.00430 * 2 1 4 4 H 1.48508 * 109.47228 * 275.36858 * 3 2 1 5 5 H 1.48498 * 109.47242 * 35.36622 * 3 2 1 6 6 H 1.48498 * 109.47504 * 155.36518 * 3 2 1 7 7 C 1.39944 * 119.99552 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00462 * 342.13902 * 7 2 1 9 9 C 1.41021 * 119.99839 * 162.14770 * 7 2 1 10 10 C 1.40993 * 120.69650 * 329.90262 * 9 7 2 11 11 C 1.38079 * 118.27024 * 180.27909 * 10 9 7 12 12 Br 1.89105 * 120.19237 * 179.97438 * 11 10 9 13 13 C 1.38769 * 119.61276 * 0.02562 * 11 10 9 14 14 N 1.31977 * 121.43159 * 359.97438 * 13 11 10 15 15 C 1.32261 * 121.87127 * 0.02562 * 14 13 11 16 16 N 1.38111 * 119.88975 * 180.02562 * 15 14 13 17 17 H 0.97007 * 119.99702 * 0.02562 * 1 2 3 18 18 H 1.07995 * 120.86507 * 0.25676 * 10 9 7 19 19 H 1.07997 * 119.28909 * 180.02562 * 13 11 10 20 20 H 0.97001 * 119.99836 * 180.02562 * 16 15 14 21 21 H 0.96994 * 120.00412 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.3768 2.1118 -1.3940 5 1 1.5016 2.6172 0.8103 6 1 3.5923 1.4099 0.5836 7 6 2.0083 -1.2120 0.0005 8 1 1.5073 -2.1247 0.2878 9 6 3.3675 -1.2416 -0.3739 10 6 3.8781 -0.3140 -1.3048 11 6 5.2153 -0.3921 -1.6398 12 35 5.9569 0.8244 -2.8833 13 6 6.0116 -1.3693 -1.0595 14 7 5.5195 -2.2310 -0.1894 15 6 4.2476 -2.2085 0.1727 16 7 3.7760 -3.1297 1.0873 17 1 -0.4850 0.8401 -0.0004 18 1 3.2397 0.4379 -1.7447 19 1 7.0569 -1.4254 -1.3250 20 1 2.8435 -3.1149 1.3537 21 1 4.3773 -3.7915 1.4633 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215609549.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:56 Heat of formation + Delta-G solvation = 22.995789 kcal Electronic energy + Delta-G solvation = -10254.852472 eV Core-core repulsion = 8176.266008 eV Total energy + Delta-G solvation = -2078.586464 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.87503 -34.14420 -33.75981 -31.55055 -30.46792 -27.53796 -25.48068 -22.36775 -20.78029 -17.61251 -16.68355 -16.46415 -15.12039 -14.00000 -13.69965 -13.35999 -13.19668 -12.34204 -12.19671 -11.54445 -10.91805 -10.90286 -10.50982 -10.07827 -9.63083 -9.51036 -9.28009 -8.40385 -8.34988 -7.09069 -6.98281 -4.53910 2.27071 2.46858 2.54654 3.05061 3.11912 3.24369 3.88364 4.40376 4.63452 5.22917 5.77958 6.02363 6.24165 6.54797 6.87269 7.05513 7.19257 7.48745 7.95423 8.11778 8.33851 8.53764 8.58937 9.34977 9.92293 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.026887 B = 0.013278 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.131260 B = 2108.292542 C = 2981.441853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.087 3.913 3 Si 0.900 3.100 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.437 4.437 8 H 0.095 0.905 9 C 0.016 3.984 10 C -0.179 4.179 11 C -0.128 4.128 12 Br -0.098 7.098 13 C 0.042 3.958 14 N -0.528 5.528 15 C 0.342 3.658 16 N -0.850 5.850 17 H 0.288 0.712 18 H 0.118 0.882 19 H 0.134 0.866 20 H 0.407 0.593 21 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 1.552 -2.067 6.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.133 4.133 3 Si 0.726 3.274 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.168 1.168 7 C -0.467 4.467 8 H 0.113 0.887 9 C 0.007 3.993 10 C -0.207 4.207 11 C -0.211 4.211 12 Br -0.015 7.015 13 C -0.112 4.112 14 N -0.247 5.247 15 C 0.099 3.901 16 N -0.396 5.396 17 H 0.098 0.902 18 H 0.135 0.865 19 H 0.152 0.848 20 H 0.238 0.762 21 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 7.008 1.540 -2.225 7.512 hybrid contribution -0.666 0.938 0.076 1.153 sum 6.342 2.478 -2.150 7.140 Atomic orbital electron populations 1.69681 1.07941 1.30504 1.34419 1.26070 0.94748 1.01533 0.90959 0.86414 0.81356 0.80068 0.79537 1.18964 1.21373 1.16793 1.19099 0.92295 0.96133 1.39208 0.88737 1.18038 0.94153 0.93219 0.93847 1.20949 0.93407 1.04489 1.01810 1.22107 0.96776 0.99787 1.02442 1.96428 1.84918 1.61067 1.59081 1.21431 0.98087 0.93572 0.98067 1.66794 1.13602 1.26735 1.17537 1.18616 0.88305 0.92046 0.91169 1.41714 1.13547 1.35962 1.48361 0.90191 0.86460 0.84829 0.76183 0.78442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.27 13.93 55.55 0.77 -19.50 14 2 C 0.09 2.17 5.42 -17.33 -0.09 2.07 14 3 Si 0.90 20.30 24.53 -169.99 -4.17 16.13 14 4 H -0.26 -5.87 6.71 56.52 0.38 -5.49 14 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 14 6 H -0.24 -5.76 6.85 56.52 0.39 -5.38 14 7 C -0.44 -10.95 8.93 -37.89 -0.34 -11.29 14 8 H 0.09 2.37 7.03 -52.48 -0.37 2.00 14 9 C 0.02 0.40 5.12 -106.47 -0.55 -0.15 14 10 C -0.18 -4.30 7.04 -38.60 -0.27 -4.57 14 11 C -0.13 -2.83 6.23 -39.44 -0.25 -3.07 14 12 Br -0.10 -1.83 33.72 -68.01 -2.29 -4.13 14 13 C 0.04 0.91 10.92 -17.29 -0.19 0.72 14 14 N -0.53 -11.93 10.37 -11.84 -0.12 -12.05 14 15 C 0.34 7.78 7.79 -155.01 -1.21 6.57 14 16 N -0.85 -15.90 8.97 31.45 0.28 -15.62 14 17 H 0.29 6.64 8.30 -40.82 -0.34 6.30 14 18 H 0.12 2.84 4.82 -52.49 -0.25 2.58 14 19 H 0.13 2.55 8.06 -52.49 -0.42 2.13 14 20 H 0.41 7.25 7.12 -40.82 -0.29 6.96 14 21 H 0.39 6.24 8.95 -40.82 -0.37 5.87 14 LS Contribution 207.91 15.07 3.13 3.13 Total: -1.00 -26.41 207.91 -6.16 -32.57 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -0.87 Total: 9.17 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.89 Total: -9.72 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.93 Total: -47.17 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.17 Total: 16.13 kcal Atomic # 35 Polarization: -1.83 SS G_CDS: -2.29 Total: -4.13 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -26.41 -6.16 -32.57 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215609549.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.569 kcal (2) G-P(sol) polarization free energy of solvation -26.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds