Wall clock time and date at job start Mon Mar 30 2020 04:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.48845 * 2 1 4 4 C 1.53051 * 109.49206 * 239.95096 * 2 1 3 5 5 N 1.46961 * 109.36660 * 298.43999 * 4 2 1 6 6 C 1.46958 * 110.87356 * 300.67574 * 5 4 2 7 7 H 1.08995 * 109.49108 * 299.33139 * 6 5 4 8 8 C 1.50703 * 109.48617 * 179.28819 * 6 5 4 9 9 H 1.08002 * 119.99819 * 266.00134 * 8 6 5 10 10 C 1.37875 * 119.99805 * 85.99621 * 8 6 5 11 11 N 1.31509 * 120.00167 * 353.45222 * 10 8 6 12 12 Si 1.86804 * 119.99915 * 173.45648 * 10 8 6 13 13 H 1.48494 * 109.47638 * 89.99913 * 12 10 8 14 14 H 1.48499 * 109.47049 * 210.00032 * 12 10 8 15 15 H 1.48507 * 109.46761 * 329.99784 * 12 10 8 16 16 C 1.53049 * 109.36622 * 59.32568 * 6 5 4 17 17 N 1.46961 * 109.36295 * 301.59048 * 16 6 5 18 18 C 1.46901 * 110.99903 * 183.18591 * 17 16 6 19 19 C 1.52999 * 109.46655 * 66.20722 * 18 17 16 20 20 N 1.46903 * 109.46990 * 179.97438 * 19 18 17 21 21 C 1.46901 * 111.00252 * 66.04440 * 20 19 18 22 22 C 1.46903 * 111.00064 * 189.99831 * 20 19 18 23 23 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47349 * 300.04816 * 1 2 3 25 25 H 1.09001 * 109.46987 * 60.04923 * 1 2 3 26 26 H 1.08993 * 109.48823 * 178.46908 * 4 2 1 27 27 H 1.09002 * 109.48454 * 58.40295 * 4 2 1 28 28 H 1.00890 * 110.99973 * 176.81250 * 5 4 2 29 29 H 0.97001 * 120.00137 * 354.60389 * 11 10 8 30 30 H 1.08998 * 109.49404 * 61.56057 * 16 6 5 31 31 H 1.09005 * 109.49163 * 181.62701 * 16 6 5 32 32 H 1.09002 * 109.47063 * 186.20157 * 18 17 16 33 33 H 1.08993 * 109.47532 * 306.20424 * 18 17 16 34 34 H 1.09001 * 109.47425 * 299.99686 * 19 18 17 35 35 H 1.09000 * 109.47755 * 59.99709 * 19 18 17 36 36 H 1.08996 * 109.46922 * 59.99879 * 21 20 19 37 37 H 1.08997 * 109.47281 * 180.02562 * 21 20 19 38 38 H 1.09007 * 109.46541 * 300.00099 * 21 20 19 39 39 H 1.09007 * 109.46682 * 59.99949 * 22 20 19 40 40 H 1.09001 * 109.47054 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.47371 * 299.99998 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7225 -1.2489 5 7 1.5809 -2.1181 -1.2268 6 6 2.0712 -2.8120 -0.0277 7 1 3.1612 -2.8124 -0.0279 8 6 1.5680 -4.2326 -0.0279 9 1 0.6572 -4.4828 0.4958 10 6 2.2703 -5.2126 -0.6967 11 7 3.3056 -4.8885 -1.4400 12 14 1.7510 -7.0007 -0.5472 13 1 0.7707 -7.3226 -1.6152 14 1 2.9425 -7.8757 -0.6889 15 1 1.1270 -7.2255 0.7816 16 6 1.5605 -2.0897 1.2212 17 7 2.0203 -0.6940 1.1991 18 6 1.6133 0.0137 2.4203 19 6 2.3415 -0.5868 3.6244 20 7 1.9350 0.1213 4.8456 21 6 0.5157 -0.1137 5.1428 22 6 2.7816 -0.2625 5.9832 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5146 0.8895 25 1 -0.3633 0.5131 -0.8904 26 1 3.1303 -0.6987 -1.2627 27 1 1.6545 -0.2264 -2.1393 28 1 1.8604 -2.6042 -2.0655 29 1 3.5282 -3.9550 -1.5811 30 1 0.4709 -2.1134 1.2350 31 1 1.9467 -2.5857 2.1117 32 1 1.8690 1.0696 2.3307 33 1 0.5370 -0.0890 2.5583 34 1 2.0860 -1.6427 3.7141 35 1 3.4179 -0.4841 3.4865 36 1 0.3461 -1.1809 5.2847 37 1 0.2411 0.4223 6.0513 38 1 -0.0933 0.2437 4.3123 39 1 3.8198 -0.0133 5.7638 40 1 2.4593 0.2766 6.8741 41 1 2.6940 -1.3352 6.1557 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220492042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:44 Heat of formation + Delta-G solvation = 11.767135 kcal Electronic energy + Delta-G solvation = -18605.187745 eV Core-core repulsion = 15940.883931 eV Total energy + Delta-G solvation = -2664.303813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.11023 -37.25900 -34.37022 -32.62723 -30.73966 -29.10791 -27.61962 -26.95678 -24.78420 -24.36457 -22.71451 -21.37259 -20.43061 -18.03688 -17.09529 -16.08479 -15.45322 -15.14200 -14.89828 -14.16983 -14.00388 -13.76481 -13.69710 -13.39870 -13.08210 -12.62919 -12.42961 -12.30581 -11.77826 -11.67045 -11.58863 -11.32374 -11.18221 -11.06215 -10.82284 -10.68306 -10.33193 -10.14646 -9.88498 -9.70019 -8.66845 -8.46394 -8.36455 -7.74131 -7.14505 -6.42787 -4.16121 3.41889 3.44355 3.60623 3.84344 4.46798 4.63101 5.11132 5.12739 5.15038 5.24268 5.37194 5.43258 5.49889 5.58421 5.63309 5.71124 5.74906 5.80082 5.86856 5.91134 6.04043 6.10742 6.12172 6.24456 6.30060 6.37483 6.40242 6.52625 6.78944 6.89323 7.00983 7.02855 7.20850 7.61090 7.68196 7.97882 8.35652 8.47735 8.64964 8.81494 9.57095 10.94184 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.006964 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.162827 B = 4019.461300 C = 4846.175395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.091 3.909 3 H 0.069 0.931 4 C 0.058 3.942 5 N -0.685 5.685 6 C 0.201 3.799 7 H 0.008 0.992 8 C -0.581 4.581 9 H 0.051 0.949 10 C 0.024 3.976 11 N -0.908 5.908 12 Si 1.071 2.929 13 H -0.288 1.288 14 H -0.284 1.284 15 H -0.289 1.289 16 C 0.074 3.926 17 N -0.538 5.538 18 C 0.062 3.938 19 C 0.057 3.943 20 N -0.549 5.549 21 C 0.021 3.979 22 C 0.026 3.974 23 H 0.076 0.924 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.022 0.978 27 H 0.059 0.941 28 H 0.336 0.664 29 H 0.267 0.733 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.025 0.975 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 9.578 8.860 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 H 0.087 0.913 4 C -0.073 4.073 5 N -0.319 5.319 6 C 0.095 3.905 7 H 0.026 0.974 8 C -0.620 4.620 9 H 0.069 0.931 10 C -0.182 4.182 11 N -0.544 5.544 12 Si 0.900 3.100 13 H -0.214 1.214 14 H -0.210 1.210 15 H -0.215 1.215 16 C -0.054 4.054 17 N -0.263 5.263 18 C -0.067 4.067 19 C -0.071 4.071 20 N -0.273 5.273 21 C -0.127 4.127 22 C -0.122 4.122 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.154 0.846 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.918 8.695 8.624 12.589 hybrid contribution -0.538 0.660 0.368 0.928 sum -3.456 9.355 8.992 13.428 Atomic orbital electron populations 1.22300 0.97449 1.03322 1.00133 1.21631 0.93149 0.96525 0.90540 0.91258 1.21920 0.96833 0.92927 0.95606 1.61272 1.63434 1.00198 1.06965 1.19269 0.93778 0.92043 0.85454 0.97419 1.21895 1.11932 0.92120 1.36085 0.93069 1.25896 0.93833 1.05549 0.92873 1.70805 1.26657 1.20939 1.36030 0.83514 0.75849 0.74692 0.75990 1.21428 1.20974 1.21488 1.22272 0.97419 0.85792 0.99902 1.62374 1.59579 1.03468 1.00841 1.21977 0.96866 0.98267 0.89588 1.22149 1.00833 0.95597 0.88534 1.61940 1.03370 1.58145 1.03847 1.22433 0.89280 0.99295 1.01725 1.22354 0.97980 0.98542 0.93361 0.90517 0.94139 0.93017 0.95975 0.92277 0.84553 0.92197 0.95077 0.91850 0.90966 0.95118 0.94260 0.90139 0.95594 0.91716 0.91226 0.91342 0.91625 0.95642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 8.37 37.16 0.31 -2.58 16 2 C 0.09 1.60 2.96 -67.65 -0.20 1.40 16 3 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 4 C 0.06 1.12 6.15 -3.76 -0.02 1.09 16 5 N -0.69 -15.68 5.85 -107.81 -0.63 -16.31 16 6 C 0.20 5.04 2.13 -68.81 -0.15 4.89 16 7 H 0.01 0.23 7.11 -51.93 -0.37 -0.14 16 8 C -0.58 -16.00 8.58 -34.44 -0.30 -16.29 16 9 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 10 C 0.02 0.66 5.45 -17.82 -0.10 0.56 16 11 N -0.91 -26.68 13.56 55.43 0.75 -25.93 16 12 Si 1.07 24.83 29.91 -169.99 -5.08 19.75 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.07 1.60 4.29 -3.77 -0.02 1.58 16 17 N -0.54 -10.07 4.66 -226.48 -1.06 -11.13 16 18 C 0.06 0.97 4.27 -3.82 -0.02 0.96 16 19 C 0.06 0.86 4.89 -3.82 -0.02 0.84 16 20 N -0.55 -7.19 5.02 -251.25 -1.26 -8.46 16 21 C 0.02 0.25 9.32 60.07 0.56 0.81 16 22 C 0.03 0.29 9.57 60.07 0.57 0.86 16 23 H 0.08 1.50 5.94 -51.93 -0.31 1.19 16 24 H 0.04 0.61 6.71 -51.93 -0.35 0.27 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.34 8.15 8.17 -39.30 -0.32 7.83 16 29 H 0.27 7.82 6.33 -40.82 -0.26 7.56 16 30 H 0.03 0.70 6.34 -51.93 -0.33 0.37 16 31 H 0.06 1.40 6.34 -51.93 -0.33 1.07 16 32 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 33 H 0.03 0.49 5.32 -51.93 -0.28 0.21 16 34 H 0.04 0.65 6.47 -51.93 -0.34 0.31 16 35 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 38 H 0.07 0.83 6.47 -51.93 -0.34 0.50 16 39 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 41 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -28.68 308.56 -9.05 -37.73 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.05 Total: 5.58 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 0.63 Total: -5.88 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -2.20 Total: -61.83 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.68 -9.05 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.500 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds