Wall clock time and date at job start Mon Mar 30 2020 04:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.48845 * 2 1 4 4 C 1.53051 * 109.49206 * 239.95096 * 2 1 3 5 5 N 1.46961 * 109.36660 * 298.43999 * 4 2 1 6 6 C 1.46958 * 110.87356 * 300.67574 * 5 4 2 7 7 H 1.08995 * 109.49108 * 299.33139 * 6 5 4 8 8 C 1.50703 * 109.48617 * 179.28819 * 6 5 4 9 9 H 1.08002 * 119.99819 * 266.00134 * 8 6 5 10 10 C 1.37875 * 119.99805 * 85.99621 * 8 6 5 11 11 N 1.31509 * 120.00167 * 353.45222 * 10 8 6 12 12 Si 1.86804 * 119.99915 * 173.45648 * 10 8 6 13 13 H 1.48494 * 109.47638 * 89.99913 * 12 10 8 14 14 H 1.48499 * 109.47049 * 210.00032 * 12 10 8 15 15 H 1.48507 * 109.46761 * 329.99784 * 12 10 8 16 16 C 1.53049 * 109.36622 * 59.32568 * 6 5 4 17 17 N 1.46961 * 109.36295 * 301.59048 * 16 6 5 18 18 C 1.46901 * 110.99903 * 183.18591 * 17 16 6 19 19 C 1.52999 * 109.46655 * 66.20722 * 18 17 16 20 20 N 1.46903 * 109.46990 * 179.97438 * 19 18 17 21 21 C 1.46901 * 111.00252 * 66.04440 * 20 19 18 22 22 C 1.46903 * 111.00064 * 189.99831 * 20 19 18 23 23 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47349 * 300.04816 * 1 2 3 25 25 H 1.09001 * 109.46987 * 60.04923 * 1 2 3 26 26 H 1.08993 * 109.48823 * 178.46908 * 4 2 1 27 27 H 1.09002 * 109.48454 * 58.40295 * 4 2 1 28 28 H 1.00890 * 110.99973 * 176.81250 * 5 4 2 29 29 H 0.97001 * 120.00137 * 354.60389 * 11 10 8 30 30 H 1.08998 * 109.49404 * 61.56057 * 16 6 5 31 31 H 1.09005 * 109.49163 * 181.62701 * 16 6 5 32 32 H 1.09002 * 109.47063 * 186.20157 * 18 17 16 33 33 H 1.08993 * 109.47532 * 306.20424 * 18 17 16 34 34 H 1.09001 * 109.47425 * 299.99686 * 19 18 17 35 35 H 1.09000 * 109.47755 * 59.99709 * 19 18 17 36 36 H 1.08996 * 109.46922 * 59.99879 * 21 20 19 37 37 H 1.08997 * 109.47281 * 180.02562 * 21 20 19 38 38 H 1.09007 * 109.46541 * 300.00099 * 21 20 19 39 39 H 1.09007 * 109.46682 * 59.99949 * 22 20 19 40 40 H 1.09001 * 109.47054 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.47371 * 299.99998 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7225 -1.2489 5 7 1.5809 -2.1181 -1.2268 6 6 2.0712 -2.8120 -0.0277 7 1 3.1612 -2.8124 -0.0279 8 6 1.5680 -4.2326 -0.0279 9 1 0.6572 -4.4828 0.4958 10 6 2.2703 -5.2126 -0.6967 11 7 3.3056 -4.8885 -1.4400 12 14 1.7510 -7.0007 -0.5472 13 1 0.7707 -7.3226 -1.6152 14 1 2.9425 -7.8757 -0.6889 15 1 1.1270 -7.2255 0.7816 16 6 1.5605 -2.0897 1.2212 17 7 2.0203 -0.6940 1.1991 18 6 1.6133 0.0137 2.4203 19 6 2.3415 -0.5868 3.6244 20 7 1.9350 0.1213 4.8456 21 6 0.5157 -0.1137 5.1428 22 6 2.7816 -0.2625 5.9832 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5146 0.8895 25 1 -0.3633 0.5131 -0.8904 26 1 3.1303 -0.6987 -1.2627 27 1 1.6545 -0.2264 -2.1393 28 1 1.8604 -2.6042 -2.0655 29 1 3.5282 -3.9550 -1.5811 30 1 0.4709 -2.1134 1.2350 31 1 1.9467 -2.5857 2.1117 32 1 1.8690 1.0696 2.3307 33 1 0.5370 -0.0890 2.5583 34 1 2.0860 -1.6427 3.7141 35 1 3.4179 -0.4841 3.4865 36 1 0.3461 -1.1809 5.2847 37 1 0.2411 0.4223 6.0513 38 1 -0.0933 0.2437 4.3123 39 1 3.8198 -0.0133 5.7638 40 1 2.4593 0.2766 6.8741 41 1 2.6940 -1.3352 6.1557 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220492042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:44 Heat of formation + Delta-G solvation = -10.458795 kcal Electronic energy + Delta-G solvation = -18606.151533 eV Core-core repulsion = 15940.883931 eV Total energy + Delta-G solvation = -2665.267602 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65315 -38.42225 -36.16939 -34.36523 -32.50197 -30.55204 -28.61026 -28.41834 -26.34018 -26.20450 -24.00537 -23.18755 -21.66087 -19.70328 -19.06063 -17.62639 -16.67765 -16.46618 -16.19635 -15.70358 -15.53432 -15.40096 -15.38237 -14.92538 -14.56793 -14.26726 -13.79911 -13.31954 -13.21615 -13.10097 -12.80531 -12.68271 -12.65493 -12.58105 -12.41288 -12.06513 -11.94935 -11.83952 -11.60026 -11.35946 -10.73874 -10.52624 -9.45234 -9.25201 -9.00731 -8.65589 -6.39563 1.53284 1.60855 1.79242 2.53871 2.68104 3.07450 3.31134 3.74164 3.94088 3.96580 4.01026 4.22667 4.23423 4.36496 4.39979 4.43933 4.52046 4.55066 4.63389 4.67587 4.69578 4.77799 4.83199 4.89087 4.95855 4.97391 4.98768 5.02355 5.07494 5.18909 5.46819 5.82276 5.93051 6.02105 6.12555 6.16210 6.22782 6.44920 6.63752 6.75130 7.41726 8.71726 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.006964 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.162827 B = 4019.461300 C = 4846.175395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.088 3.912 3 H 0.099 0.901 4 C 0.056 3.944 5 N -0.684 5.684 6 C 0.205 3.795 7 H -0.032 1.032 8 C -0.594 4.594 9 H 0.043 0.957 10 C -0.023 4.023 11 N -0.931 5.931 12 Si 1.117 2.883 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.273 1.273 16 C 0.092 3.908 17 N -0.547 5.547 18 C 0.069 3.931 19 C 0.064 3.936 20 N -0.552 5.552 21 C 0.020 3.980 22 C 0.024 3.976 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.008 0.992 27 H 0.086 0.914 28 H 0.324 0.676 29 H 0.255 0.745 30 H 0.024 0.976 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.035 0.965 34 H 0.018 0.982 35 H 0.072 0.928 36 H 0.018 0.982 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 10.892 9.780 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.020 4.020 3 H 0.117 0.883 4 C -0.074 4.074 5 N -0.316 5.316 6 C 0.097 3.903 7 H -0.015 1.015 8 C -0.634 4.634 9 H 0.062 0.938 10 C -0.222 4.222 11 N -0.569 5.569 12 Si 0.939 3.061 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.199 1.199 16 C -0.036 4.036 17 N -0.272 5.272 18 C -0.059 4.059 19 C -0.064 4.064 20 N -0.276 5.276 21 C -0.128 4.128 22 C -0.124 4.124 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.027 0.973 27 H 0.104 0.896 28 H 0.140 0.860 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.036 0.964 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.970 10.047 9.561 14.426 hybrid contribution -0.204 0.354 0.106 0.422 sum -4.174 10.401 9.667 14.801 Atomic orbital electron populations 1.22175 0.96343 1.01687 1.01938 1.21760 0.93994 0.97314 0.88953 0.88311 1.22086 0.96206 0.91047 0.98093 1.61177 1.63102 1.01776 1.05499 1.19119 0.91291 0.92127 0.87781 1.01472 1.22183 1.11618 0.93875 1.35695 0.93836 1.27254 0.93315 1.09530 0.92105 1.70917 1.28040 1.20193 1.37703 0.82926 0.75874 0.70207 0.77069 1.19973 1.20896 1.19850 1.21884 0.96509 0.87633 0.97608 1.62314 1.59980 1.02237 1.02671 1.21979 0.97096 0.98535 0.88321 1.21998 1.00281 0.94553 0.89610 1.61980 1.04367 1.57566 1.03701 1.22490 0.88399 0.99150 1.02730 1.22440 0.97977 0.98579 0.93387 0.93746 0.92360 0.91210 0.97338 0.89621 0.85963 0.93466 0.95808 0.92896 0.89385 0.94725 0.96418 0.90899 0.96383 0.89442 0.91413 0.91053 0.89450 0.96136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 8.37 71.98 0.60 -4.44 16 2 C 0.09 2.94 2.96 44.92 0.13 3.07 16 3 H 0.10 2.79 8.07 -2.39 -0.02 2.77 16 4 C 0.06 2.11 6.15 86.31 0.53 2.64 16 5 N -0.68 -31.80 5.85 -495.01 -2.90 -34.70 16 6 C 0.20 10.55 2.13 44.18 0.09 10.65 16 7 H -0.03 -1.91 7.11 -2.39 -0.02 -1.92 16 8 C -0.59 -33.56 8.58 25.60 0.22 -33.34 16 9 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 10 C -0.02 -1.29 5.45 84.66 0.46 -0.83 16 11 N -0.93 -56.19 13.56 21.45 0.29 -55.90 16 12 Si 1.12 50.20 29.91 68.60 2.05 52.25 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 C 0.09 4.05 4.29 86.31 0.37 4.42 16 17 N -0.55 -20.06 4.66 -870.46 -4.06 -24.11 16 18 C 0.07 2.05 4.27 86.30 0.37 2.42 16 19 C 0.06 1.88 4.89 86.30 0.42 2.30 16 20 N -0.55 -13.45 5.02 -948.82 -4.76 -18.21 16 21 C 0.02 0.44 9.32 127.69 1.19 1.63 16 22 C 0.02 0.49 9.57 127.69 1.22 1.71 16 23 H 0.04 1.67 5.94 -2.39 -0.01 1.66 16 24 H 0.06 1.59 6.71 -2.39 -0.02 1.57 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.32 16.17 8.17 -89.70 -0.73 15.44 16 29 H 0.26 15.59 6.33 -92.71 -0.59 15.00 16 30 H 0.02 1.08 6.34 -2.39 -0.02 1.06 16 31 H 0.05 2.40 6.34 -2.38 -0.02 2.39 16 32 H 0.09 2.40 8.03 -2.39 -0.02 2.38 16 33 H 0.03 1.03 5.32 -2.39 -0.01 1.01 16 34 H 0.02 0.59 6.47 -2.39 -0.02 0.58 16 35 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 36 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.09 1.48 8.12 -2.39 -0.02 1.46 16 38 H 0.07 1.47 6.47 -2.38 -0.02 1.45 16 39 H 0.07 1.39 8.12 -2.38 -0.02 1.37 16 40 H 0.09 1.39 8.12 -2.39 -0.02 1.38 16 41 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -62.76 308.56 -3.31 -66.07 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.44 Total: 24.38 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 5.61 Total: -9.77 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -11.42 Total: -132.93 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -62.76 -3.31 -66.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.611 kcal (2) G-P(sol) polarization free energy of solvation -62.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds