Wall clock time and date at job start Mon Mar 30 2020 04:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.50732 * 2 1 4 4 C 1.53046 * 109.48935 * 120.05397 * 2 1 3 5 5 N 1.46958 * 109.36631 * 178.36624 * 4 2 1 6 6 C 1.46954 * 110.88211 * 300.68123 * 5 4 2 7 7 H 1.09002 * 109.48875 * 299.35158 * 6 5 4 8 8 C 1.50700 * 109.48780 * 179.30577 * 6 5 4 9 9 H 1.07999 * 119.99797 * 240.03981 * 8 6 5 10 10 C 1.37875 * 119.99947 * 60.04936 * 8 6 5 11 11 N 1.31511 * 120.00180 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 120.00093 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47252 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47417 * 119.99471 * 12 10 8 15 15 H 1.48502 * 109.47352 * 239.99770 * 12 10 8 16 16 C 1.53049 * 109.36229 * 59.32069 * 6 5 4 17 17 N 1.46954 * 109.48960 * 239.94512 * 2 1 3 18 18 C 1.46905 * 110.99924 * 56.84576 * 17 2 1 19 19 C 1.53001 * 109.47008 * 169.99690 * 18 17 2 20 20 N 1.46898 * 109.46796 * 179.97438 * 19 18 17 21 21 C 1.46900 * 110.99725 * 170.00215 * 20 19 18 22 22 C 1.46897 * 111.00611 * 293.95887 * 20 19 18 23 23 H 1.09002 * 109.47167 * 299.94599 * 1 2 3 24 24 H 1.09004 * 109.47113 * 59.94630 * 1 2 3 25 25 H 1.09000 * 109.47520 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.49085 * 58.40392 * 4 2 1 27 27 H 1.08998 * 109.49515 * 298.33666 * 4 2 1 28 28 H 1.00899 * 111.00027 * 176.80972 * 5 4 2 29 29 H 0.97001 * 120.00138 * 180.02562 * 11 10 8 30 30 H 1.09001 * 109.49439 * 61.56309 * 16 6 5 31 31 H 1.09002 * 109.49078 * 181.63584 * 16 6 5 32 32 H 1.08994 * 109.46917 * 290.00009 * 18 17 2 33 33 H 1.09004 * 109.46854 * 49.99953 * 18 17 2 34 34 H 1.08994 * 109.47542 * 299.99937 * 19 18 17 35 35 H 1.09004 * 109.47098 * 60.00412 * 19 18 17 36 36 H 1.08998 * 109.47400 * 60.00714 * 21 20 19 37 37 H 1.09004 * 109.47181 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.47295 * 300.00449 * 21 20 19 39 39 H 1.08994 * 109.47030 * 59.99793 * 22 20 19 40 40 H 1.09001 * 109.47610 * 180.02562 * 22 20 19 41 41 H 1.09006 * 109.47203 * 300.00227 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0406 -0.7226 1.2488 5 7 3.5096 -0.7553 1.2264 6 6 3.9999 -1.4491 0.0274 7 1 3.6359 -2.4766 0.0274 8 6 5.5069 -1.4495 0.0276 9 1 6.0471 -0.9821 -0.7823 10 6 6.1959 -2.0468 1.0618 11 7 5.5380 -2.6156 2.0483 12 14 8.0639 -2.0479 1.0619 13 1 8.5594 -1.3490 -0.1511 14 1 8.5593 -1.3478 2.2742 15 1 8.5580 -3.4483 1.0622 16 6 3.4893 -0.7265 -1.2214 17 7 2.0202 -0.6938 -1.1991 18 6 1.4888 -0.0739 -2.4203 19 6 2.2070 -0.6535 -3.6406 20 7 1.6751 -0.0340 -4.8617 21 6 2.4943 -0.3847 -6.0296 22 6 0.2702 -0.4077 -5.0728 23 1 -0.3633 0.5130 0.8905 24 1 -0.3633 0.5147 -0.8895 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6544 -1.7418 1.2627 27 1 1.7022 -0.1930 2.1394 28 1 3.8746 -1.1810 2.0652 29 1 6.0228 -3.0355 2.7761 30 1 3.8755 0.2928 -1.2353 31 1 3.8277 -1.2561 -2.1120 32 1 0.4208 -0.2781 -2.4962 33 1 1.6509 1.0033 -2.3810 34 1 3.2749 -0.4493 -3.5646 35 1 2.0449 -1.7307 -3.6798 36 1 2.4974 -1.4668 -6.1597 37 1 2.0787 0.0874 -6.9199 38 1 3.5150 -0.0343 -5.8759 39 1 -0.3260 -0.0741 -4.2236 40 1 -0.0984 0.0641 -5.9837 41 1 0.1927 -1.4908 -5.1681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220492102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:47 Heat of formation + Delta-G solvation = 15.205304 kcal Electronic energy + Delta-G solvation = -18465.088285 eV Core-core repulsion = 15800.933562 eV Total energy + Delta-G solvation = -2664.154723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.85459 -37.11537 -34.16124 -32.54170 -31.26052 -28.83698 -27.59123 -27.16793 -24.97325 -24.04981 -22.65294 -20.71021 -20.29336 -18.64312 -16.65491 -15.75343 -15.38427 -14.91821 -14.80813 -14.45431 -14.20451 -13.79910 -13.61276 -13.22888 -12.75612 -12.51543 -12.35117 -12.01170 -11.78879 -11.74301 -11.62978 -11.46996 -11.12010 -10.93812 -10.90994 -10.69514 -10.39905 -10.15160 -9.85453 -9.34861 -9.05087 -8.58099 -8.33987 -7.65523 -6.83379 -6.08788 -4.11458 3.29319 3.37326 3.41461 3.89771 4.39859 4.66914 5.08081 5.15218 5.16925 5.35975 5.37430 5.47108 5.53597 5.59310 5.64293 5.76849 5.82492 5.84690 5.91779 6.05251 6.09282 6.15685 6.22112 6.28435 6.40557 6.45636 6.51470 6.66771 6.79913 6.92450 7.03910 7.06000 7.49597 7.74051 7.77334 7.92754 8.22635 8.68179 9.00699 9.14102 9.56441 11.01992 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.006752 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.075221 B = 4145.793529 C = 5208.718863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.088 3.912 3 H 0.040 0.960 4 C 0.063 3.937 5 N -0.687 5.687 6 C 0.219 3.781 7 H 0.003 0.997 8 C -0.504 4.504 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.900 5.900 12 Si 0.899 3.101 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.285 1.285 16 C 0.066 3.934 17 N -0.537 5.537 18 C 0.061 3.939 19 C 0.051 3.949 20 N -0.549 5.549 21 C 0.026 3.974 22 C 0.022 3.978 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.363 0.637 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 3.787 -9.376 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 H 0.058 0.942 4 C -0.068 4.068 5 N -0.324 5.324 6 C 0.111 3.889 7 H 0.021 0.979 8 C -0.543 4.543 9 H 0.078 0.922 10 C -0.134 4.134 11 N -0.541 5.541 12 Si 0.727 3.273 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.211 1.211 16 C -0.062 4.062 17 N -0.263 5.263 18 C -0.067 4.067 19 C -0.077 4.077 20 N -0.274 5.274 21 C -0.123 4.123 22 C -0.126 4.126 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.187 0.813 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.310 4.332 -9.403 13.923 hybrid contribution 1.008 -1.024 0.175 1.447 sum -8.302 3.308 -9.228 12.846 Atomic orbital electron populations 1.21855 0.95496 1.01905 1.00876 1.21613 0.93663 0.95933 0.90842 0.94180 1.21871 0.92599 0.97433 0.94911 1.60979 1.03142 1.59539 1.08762 1.19039 0.93745 0.90969 0.85161 0.97912 1.21155 0.90598 1.35462 1.07121 0.92234 1.24974 0.98720 0.94397 0.95358 1.69687 1.35538 1.37923 1.10919 0.86437 0.85328 0.77535 0.78030 1.19777 1.20945 1.21126 1.22394 0.84218 0.99251 1.00304 1.62306 1.10640 1.52695 1.00692 1.22026 0.98828 0.96600 0.89283 1.22317 0.99951 0.96790 0.88642 1.61959 1.02633 1.59526 1.03243 1.22356 0.98370 0.98617 0.92915 1.22422 0.89688 0.98450 1.02040 0.92649 0.93122 0.92253 0.96146 0.92643 0.81301 0.92705 0.95325 0.91625 0.91403 0.94769 0.90003 0.93955 0.95682 0.91638 0.91276 0.91162 0.91815 0.95678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.87 37.15 0.33 -1.77 16 2 C 0.09 1.64 2.52 -67.66 -0.17 1.46 16 3 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 4 C 0.06 1.30 6.00 -3.77 -0.02 1.28 16 5 N -0.69 -17.02 6.53 -107.82 -0.70 -17.73 16 6 C 0.22 5.65 2.55 -68.81 -0.18 5.47 16 7 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 8 C -0.50 -13.92 8.76 -34.44 -0.30 -14.22 16 9 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 10 C 0.07 1.84 5.34 -17.82 -0.10 1.74 16 11 N -0.90 -25.41 11.49 55.43 0.64 -24.77 16 12 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.07 1.44 4.15 -3.77 -0.02 1.43 16 17 N -0.54 -10.30 4.67 -226.49 -1.06 -11.36 16 18 C 0.06 0.98 4.38 -3.82 -0.02 0.96 16 19 C 0.05 0.77 4.22 -3.82 -0.02 0.75 16 20 N -0.55 -7.24 5.02 -251.26 -1.26 -8.50 16 21 C 0.03 0.29 9.57 60.06 0.57 0.86 16 22 C 0.02 0.25 9.32 60.06 0.56 0.81 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.67 6.59 -51.93 -0.34 0.33 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.36 9.69 6.72 -39.29 -0.26 9.43 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.39 5.99 -51.93 -0.31 1.08 16 32 H 0.07 1.00 5.27 -51.93 -0.27 0.73 16 33 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.08 1.33 6.18 -51.93 -0.32 1.01 16 35 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 39 H 0.07 0.77 6.47 -51.93 -0.34 0.43 16 40 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 41 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -28.39 311.39 -9.37 -37.76 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.30 Total: 4.88 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 0.65 Total: -1.22 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -2.39 Total: -62.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.39 -9.37 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.962 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds