Wall clock time and date at job start Mon Mar 30 2020 04:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.50732 * 2 1 4 4 C 1.53046 * 109.48935 * 120.05397 * 2 1 3 5 5 N 1.46958 * 109.36631 * 178.36624 * 4 2 1 6 6 C 1.46954 * 110.88211 * 300.68123 * 5 4 2 7 7 H 1.09002 * 109.48875 * 299.35158 * 6 5 4 8 8 C 1.50700 * 109.48780 * 179.30577 * 6 5 4 9 9 H 1.07999 * 119.99797 * 240.03981 * 8 6 5 10 10 C 1.37875 * 119.99947 * 60.04936 * 8 6 5 11 11 N 1.31511 * 120.00180 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 120.00093 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47252 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47417 * 119.99471 * 12 10 8 15 15 H 1.48502 * 109.47352 * 239.99770 * 12 10 8 16 16 C 1.53049 * 109.36229 * 59.32069 * 6 5 4 17 17 N 1.46954 * 109.48960 * 239.94512 * 2 1 3 18 18 C 1.46905 * 110.99924 * 56.84576 * 17 2 1 19 19 C 1.53001 * 109.47008 * 169.99690 * 18 17 2 20 20 N 1.46898 * 109.46796 * 179.97438 * 19 18 17 21 21 C 1.46900 * 110.99725 * 170.00215 * 20 19 18 22 22 C 1.46897 * 111.00611 * 293.95887 * 20 19 18 23 23 H 1.09002 * 109.47167 * 299.94599 * 1 2 3 24 24 H 1.09004 * 109.47113 * 59.94630 * 1 2 3 25 25 H 1.09000 * 109.47520 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.49085 * 58.40392 * 4 2 1 27 27 H 1.08998 * 109.49515 * 298.33666 * 4 2 1 28 28 H 1.00899 * 111.00027 * 176.80972 * 5 4 2 29 29 H 0.97001 * 120.00138 * 180.02562 * 11 10 8 30 30 H 1.09001 * 109.49439 * 61.56309 * 16 6 5 31 31 H 1.09002 * 109.49078 * 181.63584 * 16 6 5 32 32 H 1.08994 * 109.46917 * 290.00009 * 18 17 2 33 33 H 1.09004 * 109.46854 * 49.99953 * 18 17 2 34 34 H 1.08994 * 109.47542 * 299.99937 * 19 18 17 35 35 H 1.09004 * 109.47098 * 60.00412 * 19 18 17 36 36 H 1.08998 * 109.47400 * 60.00714 * 21 20 19 37 37 H 1.09004 * 109.47181 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.47295 * 300.00449 * 21 20 19 39 39 H 1.08994 * 109.47030 * 59.99793 * 22 20 19 40 40 H 1.09001 * 109.47610 * 180.02562 * 22 20 19 41 41 H 1.09006 * 109.47203 * 300.00227 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0406 -0.7226 1.2488 5 7 3.5096 -0.7553 1.2264 6 6 3.9999 -1.4491 0.0274 7 1 3.6359 -2.4766 0.0274 8 6 5.5069 -1.4495 0.0276 9 1 6.0471 -0.9821 -0.7823 10 6 6.1959 -2.0468 1.0618 11 7 5.5380 -2.6156 2.0483 12 14 8.0639 -2.0479 1.0619 13 1 8.5594 -1.3490 -0.1511 14 1 8.5593 -1.3478 2.2742 15 1 8.5580 -3.4483 1.0622 16 6 3.4893 -0.7265 -1.2214 17 7 2.0202 -0.6938 -1.1991 18 6 1.4888 -0.0739 -2.4203 19 6 2.2070 -0.6535 -3.6406 20 7 1.6751 -0.0340 -4.8617 21 6 2.4943 -0.3847 -6.0296 22 6 0.2702 -0.4077 -5.0728 23 1 -0.3633 0.5130 0.8905 24 1 -0.3633 0.5147 -0.8895 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6544 -1.7418 1.2627 27 1 1.7022 -0.1930 2.1394 28 1 3.8746 -1.1810 2.0652 29 1 6.0228 -3.0355 2.7761 30 1 3.8755 0.2928 -1.2353 31 1 3.8277 -1.2561 -2.1120 32 1 0.4208 -0.2781 -2.4962 33 1 1.6509 1.0033 -2.3810 34 1 3.2749 -0.4493 -3.5646 35 1 2.0449 -1.7307 -3.6798 36 1 2.4974 -1.4668 -6.1597 37 1 2.0787 0.0874 -6.9199 38 1 3.5150 -0.0343 -5.8759 39 1 -0.3260 -0.0741 -4.2236 40 1 -0.0984 0.0641 -5.9837 41 1 0.1927 -1.4908 -5.1681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220492102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:46 Heat of formation + Delta-G solvation = -6.913590 kcal Electronic energy + Delta-G solvation = -18466.047433 eV Core-core repulsion = 15800.933562 eV Total energy + Delta-G solvation = -2665.113870 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38777 -38.30727 -35.96314 -34.22997 -33.07043 -30.28645 -28.85814 -28.43950 -26.53796 -25.81292 -23.92474 -22.44352 -21.56048 -20.33662 -18.64381 -17.32552 -16.58790 -16.42357 -16.27796 -15.84569 -15.80162 -15.38589 -15.04267 -14.75620 -14.33795 -14.06991 -13.74464 -13.28713 -13.17282 -12.99349 -12.85374 -12.75744 -12.65318 -12.54854 -12.41313 -12.20758 -12.10372 -11.67247 -11.58915 -11.15342 -10.98988 -10.67285 -9.36055 -9.22200 -8.82220 -8.18825 -6.30166 1.41400 1.43349 1.55140 2.41282 2.75129 3.07991 3.31614 3.85424 3.93553 4.06790 4.14275 4.30833 4.36012 4.37766 4.48280 4.53898 4.59181 4.63910 4.70818 4.72295 4.81499 4.85476 4.90710 4.95108 4.99082 5.01973 5.05640 5.09287 5.13058 5.34139 5.47913 5.74853 5.93460 6.04116 6.07955 6.26574 6.32593 6.61435 6.95084 7.08589 7.41829 8.91136 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.006752 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.075221 B = 4145.793529 C = 5208.718863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.088 3.912 3 H 0.032 0.968 4 C 0.061 3.939 5 N -0.696 5.696 6 C 0.220 3.780 7 H -0.040 1.040 8 C -0.530 4.530 9 H 0.056 0.944 10 C 0.021 3.979 11 N -0.924 5.924 12 Si 0.965 3.035 13 H -0.268 1.268 14 H -0.279 1.279 15 H -0.280 1.280 16 C 0.083 3.917 17 N -0.545 5.545 18 C 0.068 3.932 19 C 0.058 3.942 20 N -0.558 5.558 21 C 0.024 3.976 22 C 0.021 3.979 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.007 0.993 27 H 0.076 0.924 28 H 0.348 0.652 29 H 0.266 0.734 30 H 0.015 0.985 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.025 0.975 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.168 4.661 -10.374 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.020 4.020 3 H 0.050 0.950 4 C -0.070 4.070 5 N -0.330 5.330 6 C 0.112 3.888 7 H -0.022 1.022 8 C -0.569 4.569 9 H 0.074 0.926 10 C -0.178 4.178 11 N -0.565 5.565 12 Si 0.791 3.209 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.046 4.046 17 N -0.271 5.271 18 C -0.060 4.060 19 C -0.070 4.070 20 N -0.283 5.283 21 C -0.124 4.124 22 C -0.127 4.127 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.095 0.905 28 H 0.170 0.830 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.238 5.218 -10.424 15.514 hybrid contribution 1.234 -1.303 0.480 1.858 sum -9.004 3.915 -9.944 13.974 Atomic orbital electron populations 1.21777 0.91921 1.02456 1.02854 1.21669 0.96373 0.94660 0.89338 0.95046 1.22028 0.90145 0.97372 0.97423 1.60974 1.05737 1.58692 1.07638 1.18925 0.93267 0.89340 0.87272 1.02202 1.21456 0.91881 1.36078 1.07441 0.92565 1.25761 1.03313 0.93847 0.94885 1.69801 1.37215 1.38142 1.11307 0.85401 0.79708 0.77677 0.78135 1.19244 1.20463 1.20538 1.22058 0.86337 0.97732 0.98425 1.62289 1.08626 1.53753 1.02426 1.22045 0.99801 0.96119 0.88003 1.22126 0.98984 0.96217 0.89645 1.61975 1.03916 1.59406 1.02959 1.22422 0.98132 0.98894 0.92922 1.22498 0.88319 0.98695 1.03165 0.90620 0.91266 0.92354 0.97491 0.90532 0.83034 0.92495 0.96654 0.91409 0.89306 0.95013 0.91740 0.94965 0.95621 0.89482 0.91749 0.90941 0.89787 0.95683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.87 71.98 0.64 -2.87 16 2 C 0.09 3.18 2.52 44.92 0.11 3.29 16 3 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 4 C 0.06 2.52 6.00 86.31 0.52 3.04 16 5 N -0.70 -35.34 6.53 -495.02 -3.23 -38.57 16 6 C 0.22 11.77 2.55 44.18 0.11 11.89 16 7 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 8 C -0.53 -30.03 8.76 25.60 0.22 -29.80 16 9 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 10 C 0.02 1.17 5.34 84.65 0.45 1.63 16 11 N -0.92 -53.25 11.49 21.45 0.25 -53.00 16 12 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 C 0.08 3.71 4.15 86.31 0.36 4.07 16 17 N -0.55 -20.70 4.67 -870.48 -4.07 -24.77 16 18 C 0.07 2.08 4.38 86.30 0.38 2.46 16 19 C 0.06 1.73 4.22 86.30 0.36 2.10 16 20 N -0.56 -13.69 5.02 -948.86 -4.76 -18.45 16 21 C 0.02 0.50 9.57 127.69 1.22 1.73 16 22 C 0.02 0.41 9.32 127.69 1.19 1.60 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 1.59 6.59 -2.38 -0.02 1.58 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.35 19.19 6.72 -89.69 -0.60 18.58 16 29 H 0.27 14.45 8.31 -92.71 -0.77 13.67 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 2.96 5.99 -2.39 -0.01 2.95 16 32 H 0.09 2.37 5.27 -2.39 -0.01 2.36 16 33 H 0.03 1.00 8.08 -2.39 -0.02 0.99 16 34 H 0.06 2.12 6.18 -2.39 -0.01 2.10 16 35 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 36 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 1.42 8.12 -2.39 -0.02 1.40 16 38 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 39 H 0.07 1.37 6.47 -2.39 -0.02 1.36 16 40 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 41 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 Total: -1.00 -61.94 311.39 -3.84 -65.77 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.38 Total: 23.87 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.57 Total: -0.87 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -11.82 Total: -134.79 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -61.94 -3.84 -65.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.861 kcal (2) G-P(sol) polarization free energy of solvation -61.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds