Wall clock time and date at job start Mon Mar 30 2020 04:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49044 * 2 1 4 4 C 1.53055 * 109.48920 * 239.93327 * 2 1 3 5 5 N 1.46954 * 109.36546 * 181.62981 * 4 2 1 6 6 C 1.46959 * 110.88308 * 59.31981 * 5 4 2 7 7 H 1.09000 * 109.50140 * 60.65754 * 6 5 4 8 8 C 1.50695 * 109.48979 * 180.71294 * 6 5 4 9 9 H 1.08007 * 119.99969 * 119.89738 * 8 6 5 10 10 C 1.37873 * 120.00159 * 299.88603 * 8 6 5 11 11 N 1.31516 * 120.00408 * 180.02562 * 10 8 6 12 12 Si 1.86806 * 119.99976 * 0.02562 * 10 8 6 13 13 H 1.48502 * 109.47061 * 89.99436 * 12 10 8 14 14 H 1.48496 * 109.47014 * 209.99418 * 12 10 8 15 15 H 1.48499 * 109.47144 * 329.99619 * 12 10 8 16 16 C 1.53055 * 109.36320 * 300.68153 * 6 5 4 17 17 N 1.46951 * 109.49114 * 120.04096 * 2 1 3 18 18 C 1.46902 * 111.00418 * 303.15583 * 17 2 1 19 19 C 1.53000 * 109.47376 * 169.99743 * 18 17 2 20 20 N 1.46901 * 109.46828 * 179.97438 * 19 18 17 21 21 C 1.46907 * 110.99615 * 66.04882 * 20 19 18 22 22 C 1.46894 * 110.99861 * 189.99863 * 20 19 18 23 23 H 1.09002 * 109.47153 * 299.95663 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.95836 * 1 2 3 26 26 H 1.08993 * 109.48769 * 301.59594 * 4 2 1 27 27 H 1.08997 * 109.48611 * 61.66571 * 4 2 1 28 28 H 1.00904 * 110.99909 * 295.45205 * 5 4 2 29 29 H 0.96996 * 120.00596 * 180.02562 * 11 10 8 30 30 H 1.08993 * 109.48769 * 298.43196 * 16 6 5 31 31 H 1.08996 * 109.50272 * 178.37187 * 16 6 5 32 32 H 1.08997 * 109.47020 * 290.00421 * 18 17 2 33 33 H 1.09007 * 109.46618 * 49.99848 * 18 17 2 34 34 H 1.08999 * 109.47166 * 300.00019 * 19 18 17 35 35 H 1.08998 * 109.46921 * 60.00388 * 19 18 17 36 36 H 1.08996 * 109.46896 * 59.99876 * 21 20 19 37 37 H 1.08998 * 109.46538 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.46924 * 299.99638 * 21 20 19 39 39 H 1.09003 * 109.47223 * 60.00474 * 22 20 19 40 40 H 1.09000 * 109.47632 * 180.02562 * 22 20 19 41 41 H 1.09000 * 109.47142 * 300.00662 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7229 -1.2487 5 7 3.5096 -0.7555 -1.2264 6 6 4.0000 -1.4490 -0.0271 7 1 3.6364 -2.4766 -0.0267 8 6 5.5070 -1.4490 -0.0272 9 1 6.0470 -0.9804 0.7823 10 6 6.1963 -2.0473 -1.0605 11 7 7.5115 -2.0477 -1.0603 12 14 5.2623 -2.8574 -2.4608 13 1 5.0152 -1.8602 -3.5332 14 1 6.0647 -3.9817 -3.0058 15 1 3.9646 -3.3740 -1.9567 16 6 3.4894 -0.7262 1.2216 17 7 2.0203 -0.6935 1.1992 18 6 1.4889 -0.0734 2.4203 19 6 1.8117 -0.9601 3.6247 20 7 1.2808 -0.3396 4.8458 21 6 -0.1876 -0.3032 4.8221 22 6 1.7709 -1.0329 6.0445 23 1 -0.3633 0.5132 0.8904 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5145 -0.8896 26 1 1.6544 -1.7420 -1.2623 27 1 1.7022 -0.1934 -2.1393 28 1 3.8930 0.1759 -1.2876 29 1 7.9965 -2.4682 -1.7875 30 1 3.8756 0.2930 1.2352 31 1 3.8278 -1.2553 2.1124 32 1 1.9451 0.9069 2.5581 33 1 0.4083 0.0382 2.3304 34 1 1.3554 -1.9403 3.4869 35 1 2.8922 -1.0716 3.7145 36 1 -0.5751 -1.3193 4.7495 37 1 -0.5543 0.1606 5.7378 38 1 -0.5229 0.2759 3.9616 39 1 2.8595 -0.9844 6.0727 40 1 1.3624 -0.5536 6.9341 41 1 1.4544 -2.0756 6.0161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220492167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:49 Heat of formation + Delta-G solvation = 17.684228 kcal Electronic energy + Delta-G solvation = -18516.175120 eV Core-core repulsion = 15852.127891 eV Total energy + Delta-G solvation = -2664.047229 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.17170 -37.32973 -34.27194 -32.69813 -31.58272 -29.02295 -27.72217 -27.48468 -25.02874 -23.97845 -22.78627 -20.65406 -20.48902 -19.52108 -16.88143 -16.02840 -15.47142 -15.08442 -14.80794 -14.59007 -14.29089 -13.98393 -13.71715 -13.28632 -12.96749 -12.62108 -12.44118 -12.28270 -11.96034 -11.81855 -11.78701 -11.67138 -11.17266 -11.10163 -10.82778 -10.77788 -10.45339 -10.20148 -9.87660 -9.64278 -9.08852 -8.51009 -8.41821 -7.95243 -7.30745 -5.99802 -4.09850 3.59581 3.63228 3.76376 3.78250 4.44541 4.67069 4.96043 5.04455 5.08823 5.18199 5.29277 5.32132 5.38476 5.45660 5.55836 5.57708 5.65907 5.73247 5.79070 5.81092 5.85073 5.93679 6.03831 6.06936 6.15116 6.22234 6.22950 6.28899 6.58377 6.65226 6.93000 6.96832 7.05376 7.51961 7.53965 7.72451 8.18286 8.23602 8.66922 8.98926 9.64174 11.09587 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.006734 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.491434 B = 4156.731907 C = 4926.616648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 H 0.033 0.967 4 C 0.061 3.939 5 N -0.685 5.685 6 C 0.187 3.813 7 H 0.049 0.951 8 C -0.525 4.525 9 H 0.070 0.930 10 C 0.082 3.918 11 N -0.901 5.901 12 Si 0.933 3.067 13 H -0.280 1.280 14 H -0.318 1.318 15 H -0.271 1.271 16 C 0.040 3.960 17 N -0.535 5.535 18 C 0.056 3.944 19 C 0.057 3.943 20 N -0.550 5.550 21 C 0.023 3.977 22 C 0.026 3.974 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.334 0.666 29 H 0.263 0.737 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.025 0.975 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.466 3.627 7.750 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 H 0.051 0.949 4 C -0.070 4.070 5 N -0.315 5.315 6 C 0.080 3.920 7 H 0.067 0.933 8 C -0.563 4.563 9 H 0.088 0.912 10 C -0.122 4.122 11 N -0.538 5.538 12 Si 0.765 3.235 13 H -0.206 1.206 14 H -0.248 1.248 15 H -0.196 1.196 16 C -0.089 4.089 17 N -0.261 5.261 18 C -0.073 4.073 19 C -0.070 4.070 20 N -0.274 5.274 21 C -0.126 4.126 22 C -0.122 4.122 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.152 0.848 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -15.249 3.012 7.253 17.153 hybrid contribution -0.552 0.351 0.046 0.656 sum -15.801 3.363 7.299 17.728 Atomic orbital electron populations 1.21858 0.95070 1.02164 1.00949 1.22365 0.95143 0.95808 0.92900 0.94855 1.22120 0.90684 1.00206 0.93964 1.61156 1.04109 1.22984 1.43223 1.19706 0.95428 0.94048 0.82858 0.93299 1.20864 0.87997 1.38328 1.09135 0.91151 1.25017 0.94570 0.94482 0.98121 1.69960 1.06846 1.44109 1.32842 0.85908 0.78700 0.77268 0.81660 1.20633 1.24764 1.19585 1.22864 0.84298 0.99419 1.02319 1.62163 1.10361 1.52875 1.00689 1.22085 0.99972 0.95750 0.89449 1.22129 1.00710 0.95872 0.88329 1.61933 1.08605 1.54151 1.02703 1.22418 0.87741 1.00026 1.02382 1.22358 1.01224 0.96186 0.92466 0.93073 0.91975 0.92523 0.91084 0.91789 0.84817 0.92737 0.95620 0.90911 0.94765 0.90917 0.93990 0.90304 0.95667 0.91737 0.91325 0.91191 0.91588 0.95676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.89 37.16 0.33 -1.47 16 2 C 0.05 0.77 2.56 -67.66 -0.17 0.59 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.06 1.07 6.00 -3.77 -0.02 1.05 16 5 N -0.68 -14.74 4.11 -107.81 -0.44 -15.18 16 6 C 0.19 4.38 1.94 -68.81 -0.13 4.25 16 7 H 0.05 1.24 7.20 -51.93 -0.37 0.86 16 8 C -0.52 -14.61 9.27 -34.44 -0.32 -14.93 16 9 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 10 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 11 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 12 Si 0.93 23.96 26.04 -169.99 -4.43 19.53 16 13 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.32 -8.26 7.11 56.52 0.40 -7.86 16 15 H -0.27 -6.86 6.54 56.52 0.37 -6.49 16 16 C 0.04 0.80 4.63 -3.76 -0.02 0.78 16 17 N -0.54 -9.18 4.53 -226.49 -1.02 -10.20 16 18 C 0.06 0.82 4.65 -3.82 -0.02 0.81 16 19 C 0.06 0.82 4.89 -3.82 -0.02 0.80 16 20 N -0.55 -6.87 5.02 -251.26 -1.26 -8.13 16 21 C 0.02 0.24 9.32 60.07 0.56 0.80 16 22 C 0.03 0.28 9.57 60.06 0.57 0.85 16 23 H 0.05 0.60 6.15 -51.93 -0.32 0.28 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.33 7.09 8.79 -39.29 -0.35 6.74 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.48 6.34 -51.93 -0.33 1.15 16 32 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.07 0.97 4.14 -51.93 -0.22 0.76 16 34 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 35 H 0.08 1.22 6.41 -51.93 -0.33 0.89 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 38 H 0.07 0.70 6.47 -51.93 -0.34 0.36 16 39 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 41 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 309.12 15.07 4.66 4.66 Total: -1.00 -30.15 309.12 -8.39 -38.53 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.33 Total: 1.89 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 0.67 Total: -4.18 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -1.96 Total: -60.43 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -4.43 Total: 19.53 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.15 -8.39 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.217 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds