Wall clock time and date at job start Mon Mar 30 2020 04:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50655 * 2 1 4 4 C 1.53050 * 109.49100 * 120.05399 * 2 1 3 5 5 N 1.46953 * 109.36553 * 61.56315 * 4 2 1 6 6 C 1.46961 * 110.88049 * 59.32447 * 5 4 2 7 7 H 1.08998 * 109.50293 * 60.65481 * 6 5 4 8 8 C 1.50699 * 109.48770 * 180.71075 * 6 5 4 9 9 H 1.08001 * 119.99218 * 119.89519 * 8 6 5 10 10 C 1.37873 * 120.00251 * 299.88825 * 8 6 5 11 11 N 1.31519 * 119.99912 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99935 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47109 * 60.00667 * 12 10 8 14 14 H 1.48503 * 109.46713 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47159 * 300.00073 * 12 10 8 16 16 C 1.53050 * 109.36075 * 300.67836 * 6 5 4 17 17 N 1.46962 * 109.36562 * 58.40471 * 16 6 5 18 18 C 1.46898 * 111.00031 * 176.81127 * 17 16 6 19 19 C 1.53002 * 109.47011 * 175.82059 * 18 17 16 20 20 N 1.46902 * 109.46853 * 174.40143 * 19 18 17 21 21 C 1.46907 * 110.99727 * 66.05009 * 20 19 18 22 22 C 1.46895 * 111.00101 * 189.99710 * 20 19 18 23 23 H 1.08998 * 109.46818 * 184.93362 * 1 2 3 24 24 H 1.08993 * 109.47359 * 304.93124 * 1 2 3 25 25 H 1.09003 * 109.47001 * 64.93602 * 1 2 3 26 26 H 1.09008 * 109.48345 * 301.59904 * 4 2 1 27 27 H 1.09002 * 109.51067 * 181.54836 * 4 2 1 28 28 H 1.00900 * 111.00386 * 295.45581 * 5 4 2 29 29 H 0.96994 * 119.99723 * 179.97438 * 11 10 8 30 30 H 1.08996 * 109.49351 * 298.43430 * 16 6 5 31 31 H 1.09009 * 109.48504 * 178.36162 * 16 6 5 32 32 H 1.09001 * 109.47173 * 55.81936 * 18 17 16 33 33 H 1.09003 * 109.46816 * 295.81746 * 18 17 16 34 34 H 1.08995 * 109.47033 * 294.40083 * 19 18 17 35 35 H 1.09000 * 109.46906 * 54.40678 * 19 18 17 36 36 H 1.08993 * 109.47354 * 59.99623 * 21 20 19 37 37 H 1.08998 * 109.47065 * 179.97438 * 21 20 19 38 38 H 1.09000 * 109.46947 * 299.99181 * 21 20 19 39 39 H 1.09001 * 109.46805 * 59.99964 * 22 20 19 40 40 H 1.08997 * 109.47761 * 180.02562 * 22 20 19 41 41 H 1.09006 * 109.47527 * 300.00803 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0406 -0.7226 1.2488 5 7 1.5809 -2.1182 1.2265 6 6 2.0712 -2.8121 0.0274 7 1 3.1612 -2.8124 0.0273 8 6 1.5680 -4.2326 0.0276 9 1 0.9461 -4.5851 -0.7821 10 6 1.9015 -5.0820 1.0611 11 7 2.6584 -4.6525 2.0471 12 14 1.2782 -6.8430 1.0608 13 1 1.7723 -7.5427 -0.1522 14 1 1.7733 -7.5434 2.2730 15 1 -0.2067 -6.8425 1.0617 16 6 1.5605 -2.0895 -1.2214 17 7 2.0203 -0.6939 -1.1991 18 6 1.6134 0.0140 -2.4203 19 6 2.0176 1.4860 -2.3152 20 7 1.7326 2.1640 -3.5868 21 6 0.2870 2.2159 -3.8432 22 6 2.3198 3.5103 -3.6088 23 1 -0.3633 -1.0239 0.0884 24 1 -0.3634 0.5884 0.8424 25 1 -0.3633 0.4354 -0.9309 26 1 1.6544 -0.2266 2.1393 27 1 3.1303 -0.6988 1.2631 28 1 0.5750 -2.1686 1.2875 29 1 2.8927 -5.2500 2.7743 30 1 0.4709 -2.1132 -1.2353 31 1 1.9469 -2.5854 -2.1119 32 1 0.5323 -0.0583 -2.5391 33 1 2.1048 -0.4370 -3.2825 34 1 1.4513 1.9619 -1.5147 35 1 3.0834 1.5554 -2.0973 36 1 -0.2054 2.7614 -3.0383 37 1 0.1040 2.7233 -4.7904 38 1 -0.1102 1.2020 -3.8911 39 1 3.4004 3.4373 -3.4861 40 1 2.0934 3.9900 -4.5610 41 1 1.9010 4.1027 -2.7952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220492254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:52 Heat of formation + Delta-G solvation = 22.230339 kcal Electronic energy + Delta-G solvation = -18580.960119 eV Core-core repulsion = 15917.110024 eV Total energy + Delta-G solvation = -2663.850095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.31643 -37.29187 -33.97503 -32.37553 -30.77667 -29.06098 -27.71752 -27.14437 -24.77524 -24.39733 -22.47479 -21.82453 -20.12481 -18.14107 -16.65714 -15.91334 -15.71591 -15.09107 -14.71343 -14.43972 -14.28324 -13.72354 -13.40913 -13.29082 -13.01948 -12.51169 -12.38215 -12.08445 -11.88488 -11.80767 -11.64334 -11.28568 -11.09188 -10.93641 -10.84002 -10.68855 -10.44003 -10.31634 -9.94461 -9.60397 -8.89324 -8.44207 -8.36589 -7.72897 -6.72649 -5.83761 -3.98733 3.37330 3.42437 3.44367 3.79801 4.47005 4.63222 5.03344 5.04889 5.15384 5.25258 5.28376 5.44013 5.46433 5.49361 5.57287 5.62876 5.71606 5.72985 5.81984 5.88409 6.01193 6.11262 6.13391 6.21416 6.28791 6.39170 6.47746 6.59110 6.85432 6.88378 6.93126 6.96764 7.43903 7.70270 7.80100 7.96130 8.28393 8.65131 8.99328 9.16962 9.69933 11.20576 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044318 B = 0.005400 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.651283 B = 5183.557274 C = 5408.685617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.038 3.962 3 H 0.070 0.930 4 C 0.065 3.935 5 N -0.647 5.647 6 C 0.229 3.771 7 H 0.046 0.954 8 C -0.541 4.541 9 H 0.052 0.948 10 C 0.085 3.915 11 N -0.846 5.846 12 Si 0.883 3.117 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.279 1.279 16 C 0.029 3.971 17 N -0.527 5.527 18 C 0.058 3.942 19 C 0.057 3.943 20 N -0.548 5.548 21 C 0.022 3.978 22 C 0.026 3.974 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.317 0.683 29 H 0.256 0.744 30 H 0.022 0.978 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.082 0.918 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 13.670 -7.261 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.073 4.073 3 H 0.088 0.912 4 C -0.067 4.067 5 N -0.275 5.275 6 C 0.121 3.879 7 H 0.064 0.936 8 C -0.580 4.580 9 H 0.070 0.930 10 C -0.122 4.122 11 N -0.480 5.480 12 Si 0.711 3.289 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.205 1.205 16 C -0.100 4.100 17 N -0.252 5.252 18 C -0.070 4.070 19 C -0.071 4.071 20 N -0.272 5.272 21 C -0.126 4.126 22 C -0.122 4.122 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -1.981 13.100 -7.013 14.991 hybrid contribution -2.299 0.016 -0.124 2.303 sum -4.281 13.116 -7.137 15.534 Atomic orbital electron populations 1.22421 0.98562 1.02542 1.00797 1.22580 0.92399 0.98408 0.93871 0.91222 1.22076 1.00635 0.90997 0.92968 1.61062 1.14397 1.08671 1.43362 1.19133 0.96612 0.90963 0.81230 0.93644 1.20880 1.34332 0.94893 1.07919 0.92982 1.24932 0.94416 0.97507 0.95363 1.70105 1.34047 1.34564 1.09275 0.86847 0.79175 0.85640 0.77264 1.20385 1.21380 1.20469 1.23087 0.96996 0.86535 1.03367 1.62427 1.59152 1.03111 1.00477 1.22061 0.97716 0.92953 0.94302 1.22224 1.01808 0.94374 0.88682 1.61915 1.12679 1.18371 1.34238 1.22427 0.87821 1.02139 1.00240 1.22356 1.00247 0.88958 1.00633 0.91685 0.92777 0.93576 0.92611 0.91370 0.86488 0.93404 0.95947 0.91787 0.95544 0.90454 0.94784 0.89978 0.95897 0.91631 0.91132 0.91251 0.91562 0.95898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.28 37.16 0.31 -2.60 16 2 C 0.04 0.65 2.47 -67.65 -0.17 0.49 16 3 H 0.07 1.09 6.13 -51.93 -0.32 0.77 16 4 C 0.06 1.26 6.21 -3.77 -0.02 1.24 16 5 N -0.65 -15.14 5.80 -107.81 -0.62 -15.77 16 6 C 0.23 5.69 2.45 -68.81 -0.17 5.52 16 7 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 8 C -0.54 -14.75 8.69 -34.44 -0.30 -15.05 16 9 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 10 C 0.08 2.35 5.39 -17.82 -0.10 2.26 16 11 N -0.85 -24.54 12.78 55.43 0.71 -23.83 16 12 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.03 0.62 4.45 -3.76 -0.02 0.60 16 17 N -0.53 -9.64 4.77 -226.48 -1.08 -10.72 16 18 C 0.06 0.90 4.37 -3.82 -0.02 0.89 16 19 C 0.06 0.77 4.24 -3.82 -0.02 0.75 16 20 N -0.55 -6.67 5.02 -251.26 -1.26 -7.93 16 21 C 0.02 0.24 9.32 60.07 0.56 0.80 16 22 C 0.03 0.26 9.57 60.06 0.57 0.84 16 23 H 0.06 1.15 5.13 -51.93 -0.27 0.89 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.68 6.42 -51.93 -0.33 0.35 16 26 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 27 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.32 7.33 7.07 -39.29 -0.28 7.05 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.02 0.47 6.46 -51.93 -0.34 0.14 16 31 H 0.06 1.37 8.14 -51.92 -0.42 0.94 16 32 H 0.03 0.41 5.38 -51.93 -0.28 0.13 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.03 0.46 6.56 -51.93 -0.34 0.12 16 35 H 0.08 1.15 8.06 -51.93 -0.42 0.74 16 36 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 38 H 0.07 0.80 6.59 -51.93 -0.34 0.46 16 39 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 40 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 41 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 308.03 15.07 4.64 4.64 Total: -1.00 -28.39 308.03 -9.10 -37.49 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.10 Total: 4.23 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 0.64 Total: -4.27 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -2.26 Total: -58.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.39 -9.10 -37.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.716 kcal (2) G-P(sol) polarization free energy of solvation -28.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds