Wall clock time and date at job start Mon Mar 30 2020 04:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.50652 * 2 1 4 4 C 1.53050 * 109.48928 * 239.94411 * 2 1 3 5 5 N 1.46957 * 109.36083 * 181.63194 * 4 2 1 6 6 C 1.46907 * 110.99741 * 183.18716 * 5 4 2 7 7 C 1.52997 * 109.47135 * 190.00498 * 6 5 4 8 8 N 1.46898 * 109.47352 * 180.02562 * 7 6 5 9 9 C 1.46897 * 111.00498 * 169.99277 * 8 7 6 10 10 C 1.46908 * 110.99537 * 293.95144 * 8 7 6 11 11 C 1.46956 * 110.89949 * 59.31106 * 5 4 2 12 12 C 1.53050 * 109.36346 * 300.71068 * 11 5 4 13 13 H 1.09001 * 109.48575 * 298.38827 * 12 11 5 14 14 C 1.50706 * 109.48677 * 178.34732 * 12 11 5 15 15 H 1.07995 * 120.00167 * 359.76419 * 14 12 11 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 12 11 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47405 * 60.00219 * 18 16 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 22 22 N 1.46954 * 109.38225 * 58.37170 * 12 11 5 23 23 H 1.08999 * 109.47204 * 299.94413 * 1 2 3 24 24 H 1.08999 * 109.47054 * 59.94685 * 1 2 3 25 25 H 1.09003 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.48624 * 301.59710 * 4 2 1 27 27 H 1.08992 * 109.48813 * 61.64261 * 4 2 1 28 28 H 1.09003 * 109.46702 * 310.00367 * 6 5 4 29 29 H 1.08996 * 109.46606 * 70.00118 * 6 5 4 30 30 H 1.09007 * 109.46851 * 299.99852 * 7 6 5 31 31 H 1.08995 * 109.47413 * 59.99802 * 7 6 5 32 32 H 1.09000 * 109.46447 * 59.99869 * 9 8 7 33 33 H 1.08999 * 109.47114 * 179.97438 * 9 8 7 34 34 H 1.08992 * 109.47063 * 300.00307 * 9 8 7 35 35 H 1.08993 * 109.47063 * 60.00033 * 10 8 7 36 36 H 1.08995 * 109.46673 * 179.97438 * 10 8 7 37 37 H 1.08996 * 109.47009 * 299.99643 * 10 8 7 38 38 H 1.08997 * 109.50970 * 180.73055 * 11 5 4 39 39 H 1.09002 * 109.47205 * 60.66471 * 11 5 4 40 40 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 41 41 H 1.00903 * 110.99832 * 176.82884 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7226 -1.2488 5 7 3.5097 -0.7552 -1.2263 6 6 4.0412 -1.3752 -2.4475 7 6 5.5428 -1.6187 -2.2839 8 7 6.0744 -2.2381 -3.5052 9 6 7.5428 -2.2706 -3.4828 10 6 5.5207 -3.5853 -3.6961 11 6 4.0004 -1.4487 -0.0272 12 6 3.4892 -0.7265 1.2216 13 1 3.8755 0.2927 1.2358 14 6 3.9572 -1.4588 2.4528 15 1 4.5558 -2.3523 2.3548 16 6 3.6165 -0.9909 3.7043 17 7 2.8829 0.0941 3.8235 18 14 4.1972 -1.8982 5.2304 19 1 5.6815 -1.9316 5.2517 20 1 3.6999 -1.1978 6.4418 21 1 3.6710 -3.2867 5.2111 22 7 2.0202 -0.6939 1.1992 23 1 -0.3633 0.5130 0.8905 24 1 -0.3633 0.5147 -0.8895 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6544 -1.7419 -1.2626 27 1 1.7019 -0.1932 -2.1393 28 1 3.5360 -2.3252 -2.6221 29 1 3.8708 -0.7118 -3.2954 30 1 6.0479 -0.6686 -2.1092 31 1 5.7131 -2.2820 -1.4359 32 1 7.8802 -2.8486 -2.6224 33 1 7.9100 -2.7345 -4.3983 34 1 7.9277 -1.2535 -3.4108 35 1 4.4357 -3.5238 -3.7792 36 1 5.9304 -4.0207 -4.6074 37 1 5.7849 -4.2109 -2.8435 38 1 5.0903 -1.4485 -0.0270 39 1 3.6367 -2.4763 -0.0274 40 1 2.6430 0.4230 4.7039 41 1 1.6552 -0.2680 2.0379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220492365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:31 Heat of formation + Delta-G solvation = 13.095558 kcal Electronic energy + Delta-G solvation = -18393.527934 eV Core-core repulsion = 15729.281726 eV Total energy + Delta-G solvation = -2664.246209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.72219 -37.13764 -34.15352 -33.01971 -30.58713 -28.99196 -27.59564 -26.71527 -25.23279 -24.63440 -22.13329 -21.16381 -19.79964 -18.64497 -16.56760 -15.84013 -15.43456 -14.97155 -14.78826 -14.52294 -13.97584 -13.89478 -13.72001 -13.21491 -12.80153 -12.53081 -12.37598 -11.79566 -11.71853 -11.63609 -11.56068 -11.38622 -11.12874 -10.91909 -10.79912 -10.67027 -10.43495 -10.35069 -9.85963 -9.42383 -9.08329 -8.56756 -8.30962 -7.67674 -6.82345 -6.09265 -4.12221 3.30692 3.35218 3.37931 3.89045 4.38981 4.70584 5.12831 5.13643 5.16960 5.28667 5.38928 5.55739 5.61298 5.62269 5.67440 5.77133 5.82654 5.92208 5.94071 6.05564 6.10696 6.15363 6.23683 6.26792 6.38466 6.46242 6.67374 6.70248 6.89110 6.94802 7.03349 7.06708 7.47879 7.70228 7.74527 7.91745 8.21955 8.68096 9.00202 9.15556 9.55520 11.01279 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.007028 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.224423 B = 3983.286473 C = 5105.948900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.078 3.922 3 H 0.029 0.971 4 C 0.073 3.927 5 N -0.543 5.543 6 C 0.062 3.938 7 C 0.051 3.949 8 N -0.549 5.549 9 C 0.026 3.974 10 C 0.021 3.979 11 C 0.065 3.935 12 C 0.220 3.780 13 H 0.004 0.996 14 C -0.506 4.506 15 H 0.057 0.943 16 C 0.068 3.932 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.681 5.681 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.060 0.940 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.025 0.975 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.026 0.974 40 H 0.264 0.736 41 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -3.116 -11.825 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 H 0.047 0.953 4 C -0.056 4.056 5 N -0.267 5.267 6 C -0.066 4.066 7 C -0.077 4.077 8 N -0.273 5.273 9 C -0.122 4.122 10 C -0.127 4.127 11 C -0.062 4.062 12 C 0.112 3.888 13 H 0.021 0.979 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.319 5.319 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.014 -2.846 -12.337 12.820 hybrid contribution 0.423 -0.882 1.731 1.988 sum 2.437 -3.728 -10.605 11.502 Atomic orbital electron populations 1.21734 0.95819 1.01520 1.00543 1.21403 0.93568 0.95612 0.92745 0.95340 1.22079 0.87034 0.98827 0.97632 1.62239 1.08539 1.53827 1.02132 1.22016 0.93590 0.97268 0.93727 1.22307 0.95828 0.99789 0.89732 1.61929 1.06964 1.20320 1.38108 1.22352 0.87463 1.01957 1.00471 1.22432 1.00957 0.89046 1.00296 1.22406 0.98590 0.95630 0.89579 1.19011 0.84686 0.94537 0.90554 0.97854 1.21065 1.32008 1.11239 0.90215 0.92442 1.24964 0.94644 0.94646 0.99079 1.69669 1.37882 1.22319 1.24046 0.86561 0.78913 0.79900 0.81996 1.20342 1.21276 1.20222 1.61049 1.11219 1.55853 1.03801 0.92897 0.93490 0.92585 0.95042 0.92126 0.95584 0.90802 0.89957 0.93872 0.95655 0.91643 0.91290 0.91183 0.91721 0.95644 0.91669 0.95617 0.92575 0.81307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.46 37.16 0.35 -2.01 16 2 C 0.08 1.60 3.19 -67.65 -0.22 1.38 16 3 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.07 1.36 4.86 -3.77 -0.02 1.34 16 5 N -0.54 -10.49 4.86 -234.47 -1.14 -11.63 16 6 C 0.06 1.00 5.20 -3.82 -0.02 0.98 16 7 C 0.05 0.77 4.22 -3.83 -0.02 0.76 16 8 N -0.55 -7.22 5.02 -251.27 -1.26 -8.48 16 9 C 0.03 0.29 9.57 60.06 0.57 0.86 16 10 C 0.02 0.25 9.32 60.07 0.56 0.81 16 11 C 0.07 1.44 4.15 -3.77 -0.02 1.42 16 12 C 0.22 5.66 2.55 -68.81 -0.18 5.48 16 13 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 14 C -0.51 -13.94 8.76 -34.44 -0.30 -14.25 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.87 5.35 -17.82 -0.10 1.78 16 17 N -0.90 -25.28 11.49 55.43 0.64 -24.64 16 18 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 N -0.68 -16.63 6.17 -100.81 -0.62 -17.26 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.42 6.49 -51.93 -0.34 0.08 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.28 8.06 -51.92 -0.42 0.87 16 31 H 0.04 0.71 6.24 -51.93 -0.32 0.38 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.07 0.83 6.47 -51.93 -0.34 0.49 16 36 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 1.39 6.00 -51.93 -0.31 1.08 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.36 9.59 6.65 -39.29 -0.26 9.33 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -28.14 314.92 -9.48 -37.61 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.44 Total: 4.88 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 0.63 Total: -1.44 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -2.39 Total: -62.00 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.14 -9.48 -37.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220492365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.710 kcal (2) G-P(sol) polarization free energy of solvation -28.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds